UBOX5-AS1 Gene

Name UBOX5 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough none of the studies explicitly mention UBOX5-AS1, the collective findings from these publications illuminate cellular mechanisms—particularly the regulation of spindle orientation and asymmetric cell divisions—that may provide insight into how UBOX5-AS1 could function. In neuroepithelial and retinal progenitors, a tightly controlled interplay among polarity regulators such as LGN, GPSM2, and Gαi ensures proper spindle positioning to balance self‐renewal and differentiation during mammalian development and tissue stratification."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": " These studies underscore that precise spindle alignment—as orchestrated by spatially restricted complexes at the cell cortex—is critical for maintaining progenitor pools and determining cell fate.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther reports extend these principles to specialized sensory and epithelial systems. In inner ear hair cells, for example, the localization of proteins such as LGN, Gαi, and GPSM2 is essential for organizing the hair bundle architecture and ensuring proper actin dynamics in stereocilia elongation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "7"}]}, {"type": "t", "text": " Additionally, studies in mammary and retinal progenitors have demonstrated that the formation of protein complexes, including those formed by LGN and its partners, underlie the molecular basis of asymmetric fate decisions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "8", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA further layer of regulation is provided by factors that modulate the localization and stability of these spindle orientation components. In mouse oocytes and developing retinas, for instance, dynamic changes in the cortical distribution of LGN and its interacting molecules have strong consequences for mitotic spindle organization and subsequent cell fate decisions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Structural studies also reveal versatile binding modes of LGN with various partners, suggesting that noncoding regulators may impact these interactions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " Moreover, alterations in G protein signaling and the activity of associated GAP and GEF proteins are shown to affect cytoskeletal organization and cell polarity"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": ", while genetic studies in stratified epithelia emphasize that fine-tuning of spindle orientation is key to establishing binary cell fates."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGiven that UBOX5-AS1 is an antisense transcript—and by implication a long noncoding RNA—it is plausible to speculate that its function may intersect with these pathways by regulating the expression, localization, or interaction dynamics of proteins like LGN, GPSM2, and Gαi. Although none of the provided abstracts directly examine UBOX5-AS1, the detailed molecular frameworks they describe offer a context in which UBOX5-AS1 might act as a modulatory molecule, fine-tuning the delicate balance between symmetric and asymmetric cell divisions that is essential for proper tissue development and homeostasis.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daijiro Konno, Go Shioi, Atsunori Shitamukai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neuroepithelial progenitors undergo LGN-dependent planar divisions to maintain self-renewability during mammalian neurogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Cell Biol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncb1673"}], "href": "https://doi.org/10.1038/ncb1673"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18084280"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18084280"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Elise Peyre, Florence Jaouen, Mehdi Saadaoui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A lateral belt of cortical LGN and NuMA guides mitotic spindle movements and planar division in neuroepithelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.201101039"}], "href": "https://doi.org/10.1083/jcb.201101039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21444683"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21444683"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Scott E Williams, Lyndsay A Ratliff, Maria Pia Postiglione, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Par3-mInsc and Gαi3 cooperate to promote oriented epidermal cell divisions through LGN."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Cell Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncb3001"}], "href": "https://doi.org/10.1038/ncb3001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25016959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25016959"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Stephanie A Mauriac, Yeri E Hien, Jonathan E Bird, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Defective Gpsm2/Gα"}, {"type": "a", "children": [{"type": "t", "text": "sub"}], "href": "sub"}, {"type": "t", "text": "i3"}, {"type": "a", "children": [{"type": "t", "text": "/sub"}], "href": "/sub"}, {"type": "t", "text": " signalling disrupts stereocilia development and growth cone actin dynamics in Chudley-McCullough syndrome."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms14907"}], "href": "https://doi.org/10.1038/ncomms14907"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28387217"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28387217"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Basile Tarchini, Abigail L D Tadenev, Nicholas Devanney, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A link between planar polarity and staircase-like bundle architecture in hair cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.139089"}], "href": "https://doi.org/10.1242/dev.139089"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27660326"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27660326"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Abigail L D Tadenev, Anil Akturk, Nicholas Devanney, et al. "}, {"type": "b", "children": [{"type": "t", "text": "GPSM2-GNAI Specifies the Tallest Stereocilia and Defines Hair Bundle Row Identity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Biol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cub.2019.01.051"}], "href": "https://doi.org/10.1016/j.cub.2019.01.051"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30827920"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30827920"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yoni Bhonker, Amal Abu-Rayyan, Kathy Ushakov, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Insc:LGN tetramers promote asymmetric divisions of mammary stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-018-03343-4"}], "href": "https://doi.org/10.1038/s41467-018-03343-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29523789"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29523789"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Min Jia, Jianchao Li, Jinwei Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Crystal structures of the scaffolding protein LGN reveal the general mechanism by which GoLoco binding motifs inhibit the release of GDP from Gαi."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.391607"}], "href": "https://doi.org/10.1074/jbc.M112.391607"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22952234"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22952234"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Long Shen, Lichun Kang, Dekun Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Legumain-deficient macrophages promote senescence of tumor cells by sustaining JAK1/STAT1 activation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2019.12.013"}], "href": "https://doi.org/10.1016/j.canlet.2019.12.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31857155"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31857155"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Xinzheng Guo, Shaorong Gao "}, {"type": "b", "children": [{"type": "t", "text": "Pins homolog LGN regulates meiotic spindle organization in mouse oocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Res (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cr.2009.54"}], "href": "https://doi.org/10.1038/cr.2009.54"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19434098"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19434098"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Marine Lacomme, Basile Tarchini, Camille Boudreau-Pinsonneault, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The LGN protein promotes planar proliferative divisions in the neocortex but apicobasal asymmetric terminal divisions in the retina."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.129783"}], "href": "https://doi.org/10.1242/dev.129783"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26755700"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26755700"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Zhu Pan, Yuan Shang, Min Jia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structural and biochemical characterization of the interaction between LGN and Frmpd1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jmb.2013.01.003"}], "href": "https://doi.org/10.1016/j.jmb.2013.01.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23318951"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23318951"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Anil Akturk, Matthew Day, Basile Tarchini "}, {"type": "b", "children": [{"type": "t", "text": "RGS12 polarizes the GPSM2-GNAI complex to organize and elongate stereocilia in sensory hair cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.abq2826"}], "href": "https://doi.org/10.1126/sciadv.abq2826"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36260679"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36260679"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "B Raji, A Dansault, V Vieira, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of partner of inscuteable (mPins) expression in the developing mouse eye."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Vis (2008)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19122831"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19122831"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Carlos P Descovich, Kendall J Lough, Akankshya Jena, et al. "}, {"type": "b", "children": [{"type": "t", "text": "AGS3 antagonizes LGN to balance oriented cell divisions and cell fate choices in mammalian epidermis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.80403"}], "href": "https://doi.org/10.7554/eLife.80403"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37017303"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37017303"}]}]}]}
NCBI Gene ID 100134015
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Download Associations
Predicted Functions View UBOX5-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View UBOX5-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View UBOX5-AS1's ARCHS4 Predicted Functions.

Functional Associations

UBOX5-AS1 has 830 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for UBOX5-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of UBOX5-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of UBOX5-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of UBOX5-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of UBOX5-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of UBOX5-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of UBOX5-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of UBOX5-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of UBOX5-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of UBOX5-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.