| Name | UCKL1 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nZC4H2 is a zinc‐finger nuclear factor that plays a pivotal role in neural development, as evidenced by its strong association with a spectrum of neurodevelopmental disorders—including arthrogryposis multiplex congenita, intellectual disability, dystonia, and delayed motor development. Studies have shown that mutations or deletions in ZC4H2 disrupt normal neuromuscular and cognitive functions, reflecting its importance in both central and peripheral nervous system development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its intrinsic functions, ZC4H2 cooperates with the E3 ubiquitin ligase RNF220 to fine‐tune neural patterning. The RNF220/ZC4H2 complex targets key transcription factors—such as Dbx1/2, Nkx2.2, and Phox2a/Phox2b—for ubiquitin‐mediated modifications that are critical for establishing ventral progenitor domains, the differentiation of various interneurons and motor neurons, and the development of noradrenergic neurons in the locus coeruleus. This cooperation ensures proper protein stability and timely degradation, thereby regulating cell-fate decisions in the developing spinal cord."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond neural development, ZC4H2 has been implicated in the modulation of signaling pathways that govern mesenchymal differentiation. By binding to and stabilizing Smad1 and Smad5, ZC4H2 promotes bone morphogenetic protein (BMP) signaling, which is essential for myogenic and osteogenic differentiation. Its loss not only disrupts neural stem cell proliferation and differentiation—via upregulation of key cell cycle regulators like Cend1—but also enhances osteoclast differentiation, leading to bone-development abnormalities and osteoporosis-like phenotypes. These findings highlight a broad regulatory spectrum where ZC4H2 influences both neural and skeletal tissue homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hiromi Hirata, Indrajit Nanda, Anne van Riesen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZC4H2 mutations are associated with arthrogryposis multiplex congenita and intellectual disability through impairment of central and peripheral synaptic plasticity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2013.03.021"}], "href": "https://doi.org/10.1016/j.ajhg.2013.03.021"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23623388"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23623388"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Pengcheng Ma, Biyu Ren, Xiangcai Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZC4H2 stabilizes Smads to enhance BMP signalling, which is involved in neural development in "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "Xenopus"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": "."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Open Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1098/rsob.170122"}], "href": "https://doi.org/10.1098/rsob.170122"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28814648"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28814648"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Jumee Kim, Tae-Ik Choi, Shinhye Park, et al. "}, {"type": "b", "children": [{"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "Rnf220"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " cooperates with "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "Zc4h2"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " to specify spinal progenitor domains."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.165340"}], "href": "https://doi.org/10.1242/dev.165340"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30177510"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30177510"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Pengcheng Ma, Ning-Ning Song, Xiaoning Cheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZC4H2 stabilizes RNF220 to pattern ventral spinal cord through modulating Shh/Gli signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Cell Biol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/jmcb/mjz087"}], "href": "https://doi.org/10.1093/jmcb/mjz087"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31336385"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31336385"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Ning-Ning Song, Pengcheng Ma, Qiong Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rnf220/Zc4h2-mediated monoubiquitylation of Phox2 is required for noradrenergic neuron development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.185199"}], "href": "https://doi.org/10.1242/dev.185199"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32094113"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32094113"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Longlong Zhang, Maosen Ye, Liang Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of ZC4H2 and RNF220 Inhibits Neural Stem Cell Proliferation and Promotes Neuronal Differentiation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cells (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cells9071600"}], "href": "https://doi.org/10.3390/cells9071600"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32630355"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32630355"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Liang Zhu, Longlong Zhang, Jingmei Cha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Loss of "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "ZC4H2"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": ", an Arthrogryposis Multiplex Congenita Associated Gene, Promotes Osteoclastogenesis in Mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes (Basel) (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/genes15091134"}], "href": "https://doi.org/10.3390/genes15091134"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "39336725"}], "href": "https://pubmed.ncbi.nlm.nih.gov/39336725"}]}]}]}
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| Synonyms | UCKL1AS, UCKL1OS, UCKL1-AS |
| NCBI Gene ID | 100113386 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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UCKL1-AS1 has 695 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for UCKL1-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of UCKL1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with UCKL1-AS1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of UCKL1-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of UCKL1-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of UCKL1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at UCKL1-AS1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of UCKL1-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of UCKL1-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of UCKL1-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of UCKL1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of UCKL1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain UCKL1-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of UCKL1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of UCKL1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at UCKL1-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of UCKL1-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |