| Name | UMODL1 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the query asks for a summary of UMODL1‐AS1 function, none of the provided abstracts mention or characterize UMODL1‐AS1. Instead, these studies focus on peroxisomal biology – notably the role of the import receptor PEX5 in the cytosolic recognition and subsequent translocation of matrix proteins, and its regulated interactions with cargo proteins such as catalase. These investigations detail how PEX5, through distinct contributions of its N‐ and C‐terminal domains and modulation by factors such as the PEX14 N‐terminal region, governs the proper formation and disruption of protein complexes during peroxisomal protein import."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nOther studies describe how defective peroxisomal function contributes to various pathologies including neurological impairments, disrupted neuronal migration, spermatogenic failure, and abnormal reactive oxygen species homeostasis. These works emphasize the importance of peroxisomal quality control mechanisms – for instance, the role of PEX5 monoubiquitination in both recycling the receptor and targeting defective peroxisomes for autophagic degradation – as well as the interorganelle cross‐talk between peroxisomes and mitochondria in metabolic regulation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "4", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional research extends our understanding to peroxisomal dysfunction in contexts such as cardiac hypertrophy, aging, and lipid metabolism, demonstrating that alterations in peroxisomal components (e.g., reduced PEX5 expression) affect mitochondrial structure and function, overall cellular energy production, and the biosynthesis and distribution of complex lipids like plasmalogens. Collectively, while these studies provide a comprehensive picture of peroxisomal regulation and its impact on cellular and organismal health, none reveal any role or function for UMODL1‐AS1. Thus, based on the current abstracts, UMODL1‐AS1 remains uncharacterized in these contexts."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Anneleen Janssen, Pierre Gressens, Markus Grabenbauer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Neuronal migration depends on intact peroxisomal function in brain and in extraneuronal tissues."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurosci (2003)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14586000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14586000"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Astrid Bottelbergs, Simon Verheijden, Leen Hulshagen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Axonal integrity in the absence of functional peroxisomes from projection neurons and astrocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Glia (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/glia.21027"}], "href": "https://doi.org/10.1002/glia.21027"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20578053"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20578053"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Marta O Freitas, Tânia Francisco, Tony A Rodrigues, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PEX5 protein binds monomeric catalase blocking its tetramerization and releases it upon binding the N-terminal domain of PEX14."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M111.287201"}], "href": "https://doi.org/10.1074/jbc.M111.287201"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21976670"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21976670"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Astrid Bottelbergs, Simon Verheijden, Paul P Van Veldhoven, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Peroxisome deficiency but not the defect in ether lipid synthesis causes activation of the innate immune system and axonal loss in the central nervous system."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neuroinflammation (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1742-2094-9-61"}], "href": "https://doi.org/10.1186/1742-2094-9-61"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22458306"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22458306"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Marcus Nordgren, Tânia Francisco, Celien Lismont, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Export-deficient monoubiquitinated PEX5 triggers peroxisome removal in SV40 large T antigen-transformed mouse embryonic fibroblasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Autophagy (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/15548627.2015.1061846"}], "href": "https://doi.org/10.1080/15548627.2015.1061846"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26086376"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26086376"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Zhihui Zhu, Jianzhong Chen, Guanghu Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ceramide regulates interaction of Hsd17b4 with Pex5 and function of peroxisomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Cell Biol Lipids (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbalip.2019.05.017"}], "href": "https://doi.org/10.1016/j.bbalip.2019.05.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31176039"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31176039"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Bernhard Hochreiter, Cheng-Shoong Chong, Andreas Hartig, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Novel FRET Approach Quantifies the Interaction Strength of Peroxisomal Targeting Signals and Their Receptor in Living Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cells (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cells9112381"}], "href": "https://doi.org/10.3390/cells9112381"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33143123"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33143123"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Muhammad Ali, Shahid Y Khan, Tony A Rodrigues, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A missense allele of PEX5 is responsible for the defective import of PTS2 cargo proteins into peroxisomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Genet (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00439-020-02238-z"}], "href": "https://doi.org/10.1007/s00439-020-02238-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33389129"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33389129"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Min Liu, Shuangyuan Liu, Chenyang Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Pre-meiotic deletion of PEX5 causes spermatogenesis failure and infertility in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Prolif (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cpr.13365"}], "href": "https://doi.org/10.1111/cpr.13365"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36433756"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36433756"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Ernst R Werner, Daniëlle Swinkels, Viktorija Juric, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Normal plasmalogen levels are maintained in tissues from mice with hepatocyte-specific deletion in peroxin 5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain Res Bull (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.brainresbull.2022.12.007"}], "href": "https://doi.org/10.1016/j.brainresbull.2022.12.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36584717"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36584717"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Minghui Wang, Yanqing Ding, Yuehuai Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SIRT3 improved peroxisomes-mitochondria interplay and prevented cardiac hypertrophy via preserving PEX5 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Redox Biol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.redox.2023.102652"}], "href": "https://doi.org/10.1016/j.redox.2023.102652"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36906951"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36906951"}]}]}]}
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| Synonyms | C21ORF128 |
| Proteins | UMAS1_HUMAN |
| NCBI Gene ID | 150147 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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UMODL1-AS1 has 1,032 functional associations with biological entities spanning 5 categories (molecular profile, organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.
Click the + buttons to view associations for UMODL1-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of UMODL1-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of UMODL1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of UMODL1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of UMODL1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of UMODL1-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of UMODL1-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of UMODL1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at UMODL1-AS1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of UMODL1-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of UMODL1-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of UMODL1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of UMODL1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of UMODL1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of UMODL1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of UMODL1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of UMODL1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of UMODL1-AS1 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of UMODL1-AS1 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of UMODL1-AS1 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of UMODL1-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of UMODL1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of UMODL1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of UMODL1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at UMODL1-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of UMODL1-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |