USP17L28 Gene

Name ubiquitin specific peptidase 17-like family member 28
Description Enables RNA binding activity; cysteine-type deubiquitinase activity; and hyaluronic acid binding activity. Involved in positive regulation of epithelial cell apoptotic process and protein deubiquitination involved in ubiquitin-dependent protein catabolic process. Located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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In turn, such integrin “priming” is critical for normal hemostasis and immune responses, while absence or mutation of Kindlin‑3 is associated with severe bleeding, immunodeficiency, and even skeletal abnormalities."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies have detailed how Kindlin‑3 cooperates with other adaptor proteins—such as talin, ADAP, and leupaxin—to stabilize integrin–ligand interactions and link clustered integrins to the actin cytoskeleton. This cooperation not only augments integrin‐mediated “inside‐out” and “outside‐in” signaling in diverse cell types (including T lymphocytes, neutrophils, and osteoclasts) but also regulates cell–matrix adhesion, migration, and mechanotransduction. Genetic models and quantitative proteomics have further demonstrated that precise stoichiometric levels of Kindlin‑3 (often acting together with talin) are necessary for both basal cellular functions and robust responses under stress (e.g., during vascular injury or inflammation)."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "16"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its central role in integrin activation, Kindlin‑3 has been linked to broader physiological and pathological processes. It regulates homing and retention of hematopoietic stem and progenitor cells, influences osteoclast function and bone remodeling, and modulates inflammatory as well as anti‐metastatic responses. Structural analyses have shed light on how Kindlin‑3’s modular domains—such as its FERM and pleckstrin homology motifs—mediate interactions not only with integrins but also with membrane lipids and other focal adhesion components, thereby positioning it as a key mechanosensor and signal integrator. In parallel, related reports on other transmembrane or nucleic acid–modifying proteins (for example, members of the NLRR or LRRN families, and enzymes engaged in nucleic acid ADP‑ribosylation) hint at intertwined regulatory networks governing cell adhesion, differentiation, and immune activation; indeed, the perturbation of these networks is implicated in clinical conditions such as osteopetrosis, sepsis, and immune deficiency."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "17", "end_ref": "31"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bryan P Haines, Rajeev Gupta, C Michael Jones, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The NLRR gene family and mouse development: Modified differential display PCR identifies NLRR-1 as a gene expressed in early somitic myoblasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2005.01.030"}], "href": "https://doi.org/10.1016/j.ydbio.2005.01.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15893969"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15893969"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Siegfried Ussar, Hao-Ven Wang, Stefan Linder, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Kindlins: subcellular localization and expression during murine development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Cell Res (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexcr.2006.06.030"}], "href": "https://doi.org/10.1016/j.yexcr.2006.06.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16876785"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16876785"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Heather P Harding, Jeremy G Lackey, Hao-Chi Hsu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Kindlin-3 is essential for integrin activation and platelet aggregation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Med (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nm1722"}], "href": "https://doi.org/10.1038/nm1722"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18278053"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18278053"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Marcus Krüger, Markus Moser, Siegfried Ussar, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The β2 integrin-kindlin-3 interaction is essential for T-cell homing but dispensable for T-cell activation in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2013-02-484998"}], "href": "https://doi.org/10.1182/blood-2013-02-484998"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23823319"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23823319"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Federico A Moretti, Markus Moser, Ruth Lyck, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "ADAP interactions with talin and kindlin promote platelet integrin αIIbβ3 activation and stable fibrinogen binding."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2013-08-520627"}], "href": "https://doi.org/10.1182/blood-2013-08-520627"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24523237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24523237"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Zhen Xu, Xue Chen, Huiying Zhi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Direct interaction of kindlin-3 with integrin αIIbβ3 in platelets is required for supporting arterial thrombosis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arterioscler Thromb Vasc Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1161/ATVBAHA.114.303851"}], "href": "https://doi.org/10.1161/ATVBAHA.114.303851"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24969775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24969775"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Sarah Klapproth, Federico A Moretti, Marlis Zeiler, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Minimal amounts of kindlin-3 suffice for basal platelet and leukocyte functions in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2015-04-639310"}], "href": "https://doi.org/10.1182/blood-2015-04-639310"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26438512"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26438512"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Tao Ni, Antreas C Kalli, Fiona B Naughton, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BCJ20160791"}], "href": "https://doi.org/10.1042/BCJ20160791"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27974389"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27974389"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Takuma Shiratori, Yukari Kyumoto-Nakamura, Akiko Kukita, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Differential requirement of kindlin-3 for T cell progenitor homing to the non-vascularized and vascularized thymus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.35816"}], "href": "https://doi.org/10.7554/eLife.35816"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30187863"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30187863"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Ling Guo, Chunhong Cui, Kuo Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Kindlin-2 links mechano-environment to proline synthesis and tumor growth."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-019-08772-3"}], "href": "https://doi.org/10.1038/s41467-019-08772-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30783087"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30783087"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Yanyan Yan, Hongqin Yang, Xiao Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Kindlin-3 in platelets and myeloid cells differentially regulates deep vein thrombosis in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.102229"}], "href": "https://doi.org/10.18632/aging.102229"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31477636"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31477636"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Sarah Klapproth, Thomas Bromberger, Clara Türk, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A kindlin-3-leupaxin-paxillin signaling pathway regulates podosome stability."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.201903109"}], "href": "https://doi.org/10.1083/jcb.201903109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31537712"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31537712"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Yuang Zhang, Yazhou Cui, Lin Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Autophagy promotes osteoclast podosome disassembly and cell motility athrough the interaction of kindlin3 with LC3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Signal (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cellsig.2019.109505"}], "href": "https://doi.org/10.1016/j.cellsig.2019.109505"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31857241"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31857241"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Paola M Marcovecchio, Yanfang Peipei Zhu, Richard N Hanna, et al. 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NCBI Gene ID 728400
API
Download Associations
Predicted Functions View USP17L28's ARCHS4 Predicted Functions.
Co-expressed Genes View USP17L28's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View USP17L28's ARCHS4 Predicted Functions.

Functional Associations

USP17L28 has 261 functional associations with biological entities spanning 4 categories (functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for USP17L28 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of USP17L28 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of USP17L28 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing USP17L28 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of USP17L28 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with USP17L28 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with USP17L28 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with USP17L28 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of USP17L28 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of USP17L28 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Pathway Commons Protein-Protein Interactions interacting proteins for USP17L28 from the Pathway Commons Protein-Protein Interactions dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of USP17L28 gene from the Rummagene Transcription Factor Associations 2026 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with USP17L28 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.