| Name | ubiquitin specific peptidase 17-like family member 29 |
| Description | Enables RNA binding activity; cysteine-type deubiquitinase activity; and hyaluronic acid binding activity. Involved in positive regulation of epithelial cell apoptotic process and protein deubiquitination involved in ubiquitin-dependent protein catabolic process. Located in nucleolus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies provided here paints a picture of the tightly regulated transcriptional and post‐translational networks governing early embryonic development. In particular, master regulators such as Mesp1 and Mesp2 act as “switches” for cardiovascular progenitor specification and somite segmentation by orchestrating gene activation and repression, establishing lineage fates and spatial (rostral–caudal) patterning. Several of these reports also highlight that protein turnover—mediated via the ubiquitin–proteasome system—is crucial for the timely clearance or stabilization of such key transcription factors."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA number of these articles further underscore that the ubiquitin–proteasome pathway—notably through rapid degradation of regulators like Mesp2 and modulation of Notch‐signaling components—is central to refining developmental transitions. By ensuring that the window of expression for these determinants is brief and precisely controlled, cells can properly transition between states, for example as they commit to cardiac, hematopoietic or segmented somite fates."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "16", "end_ref": "26"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIt is important to note that none of the abstracts directly address USP17L29. However, USP17L29 belongs to the ubiquitin‐specific protease family, enzymes that remove ubiquitin from protein substrates and thereby counterbalance ubiquitin‐mediated degradation. In light of the critical developmental roles that depend on the precise timing of protein turnover—as exemplified by the transient expression and targeted degradation of key factors like Mesp1/Mesp2—a plausible hypothesis is that USP17L29 could function to stabilize specific regulators during embryogenesis. By deubiquitinating target proteins, USP17L29 may contribute to fine‐tuning the balance between degradation and stability in the transcriptional networks that govern cardiovascular specification and somite segmentation. Future investigations will be necessary to directly evaluate whether USP17L29 modulates these pathways and thereby impacts early cell‐fate decisions."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "27", "end_ref": "34"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Aya Nomura-Kitabayashi, Yu Takahashi, Satoshi Kitajima, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Feedback loops comprising Dll1, Dll3 and Mesp2, and differential involvement of Psen1 are essential for rostrocaudal patterning of somites."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.00629"}], "href": "https://doi.org/10.1242/dev.00629"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12900443"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12900443"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yu Takahashi, Shuichi Hiraoka, Satoshi Kitajima, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "The oscillation of Notch activation, but not its boundary, is required for somite border formation and rostral-caudal patterning within a somite."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.044545"}], "href": "https://doi.org/10.1242/dev.044545"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20335362"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20335362"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Nobuo Sasaki, Makoto Kiso, Motoo Kitagawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The repression of Notch signaling occurs via the destabilization of mastermind-like 1 by Mesp2 and is essential for somitogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Development (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/dev.055533"}], "href": "https://doi.org/10.1242/dev.055533"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21098559"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21098559"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Antoine Bondue, Simon Tännler, Giuseppe Chiapparo, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Brief report: Oct4 and canonical Wnt signaling regulate the cardiac lineage factor Mesp1 through a Tcf/Lef-Oct4 composite element."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Stem Cells (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/stem.1362"}], "href": "https://doi.org/10.1002/stem.1362"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23417899"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23417899"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Nicolas Christoforou, Malathi Chellappan, Andrew F Adler, et al. 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| NCBI Gene ID | 728405 |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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USP17L29 has 253 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.
Click the + buttons to view associations for USP17L29 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of USP17L29 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of USP17L29 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing USP17L29 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with USP17L29 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with USP17L29 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with USP17L29 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of USP17L29 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of USP17L29 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of USP17L29 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of USP17L29 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with USP17L29 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |