VAV3-AS1 Gene

Name VAV3 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nRho GTPase signaling is central to the regulation of diverse cellular functions including cytoskeletal dynamics, cell adhesion, migration, and vascular development. Several studies have characterized key regulators—such as ARAP3, a GTPase‐activating protein that modulates RhoA, Rac1, and Arf6 activity—and adaptor molecules that mediate responses downstream of growth factor and integrin receptors. For example, ARAP3 is phosphorylated by Src-family kinases and PI3-kinase activation, leading to altered cell spreading and morphological changes during adhesion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " ARAP3 also controls neutrophil adhesion‐dependent functions by ensuring neutrophils remain quiescent until proper activation is achieved"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", while it is essential for proper sprouting angiogenesis as demonstrated in murine models"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In addition, studies using gene knockout approaches have revealed roles for other actin-regulatory proteins—such as the Nck adaptor proteins—in coordinating Rho GTPase–dependent cytoskeletal rearrangements"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": ", whereas investigation into ARAP3 function in hematopoietic and endothelial cells confirmed its crucial role during embryonic vascular formation yet minimal effects on adult hematopoiesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " Finally, ARAP3 has been implicated in protecting against excessive inflammation-induced microvascular permeability in the lung, highlighting the importance of precise Rho signaling regulation in maintaining vascular barrier integrity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn contrast to these protein regulators, the long non-coding RNA VAV3-AS1—a transcript antisense to the VAV3 gene, which encodes a Rho guanine nucleotide exchange factor—has emerged as a potential modulator of Rho/Rac signaling that impacts vascular function. A recent genetic association study found that the G allele of the VAV3-AS1 rs11185222 polymorphism is linked to an increased risk of hypertension, suggesting that alterations in VAV3-AS1 expression may influence blood pressure regulation by modifying Rho/Rac pathway activity and consequently vascular smooth muscle contractility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Stacey T T I, Zhongzhen Nie, Ashley Stewart, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ARAP3 is transiently tyrosine phosphorylated in cells attaching to fibronectin and inhibits cell spreading in a RhoGAP-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.01526"}], "href": "https://doi.org/10.1242/jcs.01526"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15546919"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15546919"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Laure Gambardella, Karen E Anderson, Claudia Nussbaum, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The GTPase-activating protein ARAP3 regulates chemotaxis and adhesion-dependent processes in neutrophils."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2010-10-312959"}], "href": "https://doi.org/10.1182/blood-2010-10-312959"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21490342"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21490342"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Laure Gambardella, Myriam Hemberger, Bethany Hughes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PI3K signaling through the dual GTPase-activating protein ARAP3 is essential for developmental angiogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Signal (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/scisignal.2001026"}], "href": "https://doi.org/10.1126/scisignal.2001026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20978237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20978237"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Joëlle Kartopawiro, Neil I Bower, Tara Karnezis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Arap3 is dysregulated in a mouse model of hypotrichosis-lymphedema-telangiectasia and regulates lymphatic vascular development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddt518"}], "href": "https://doi.org/10.1093/hmg/ddt518"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24163130"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24163130"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Aino Ruusala, Tony Pawson, Carl-Henrik Heldin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nck adapters are involved in the formation of dorsal ruffles, cell migration, and Rho signaling downstream of the platelet-derived growth factor beta receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M800913200"}], "href": "https://doi.org/10.1074/jbc.M800913200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18765673"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18765673"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yiwen Song, Jing Jiang, Sonja Vermeren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ARAP3 functions in hematopoietic stem cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0116107"}], "href": "https://doi.org/10.1371/journal.pone.0116107"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25542002"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25542002"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Julia Y Chu, Barry McCormick, Kruthika Sundaram, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ARAP3 protects from excessive formylated peptide-induced microvascular leakage by acting on endothelial cells and neutrophils."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Pathol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/path.6288"}], "href": "https://doi.org/10.1002/path.6288"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38734878"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38734878"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "José Pablo Miramontes-González, Ricardo Usategui-Martín, Javier Martín-Vallejo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "VAV3 rs7528153 and VAV3-AS1 rs1185222 polymorphisms are associated with an increased risk of developing hypertension."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur J Intern Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ejim.2020.05.014"}], "href": "https://doi.org/10.1016/j.ejim.2020.05.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32540412"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32540412"}]}]}]}
NCBI Gene ID 100873946
API
Download Associations
Predicted Functions View VAV3-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View VAV3-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View VAV3-AS1's ARCHS4 Predicted Functions.

Functional Associations

VAV3-AS1 has 180 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 8 datasets.

Click the + buttons to view associations for VAV3-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of VAV3-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with VAV3-AS1 gene from the CellMarker Gene-Cell Type Associations dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of VAV3-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of VAV3-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
HuBMAP Azimuth Cell Type Annotations cell types associated with VAV3-AS1 gene from the HuBMAP Azimuth Cell Type Annotations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of VAV3-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of VAV3-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of VAV3-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.