| HGNC Family | Protein phosphatase 1 regulatory subunits (PPP1R), Zinc fingers |
| Name | vitamin D (1,25- dihydroxyvitamin D3) receptor |
| Description | This gene encodes vitamin D3 receptor, which is a member of the nuclear hormone receptor superfamily of ligand-inducible transcription factors. This receptor also functions as a receptor for the secondary bile acid, lithocholic acid. Downstream targets of vitamin D3 receptor are principally involved in mineral metabolism, though this receptor regulates a variety of other metabolic pathways, such as those involved in immune response and cancer. Mutations in this gene are associated with type II vitamin D-resistant rickets. A single nucleotide polymorphism in the initiation codon results in an alternate translation start site three codons downstream. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. A recent study provided evidence for translational readthrough in this gene, and expression of an additional C-terminally extended isoform via the use of an alternative in-frame translation termination codon. [provided by RefSeq, Jun 2018] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe vitamin D receptor (VDR) is a ligand‐activated nuclear receptor that mediates the classical endocrine actions of the active vitamin D hormone, 1α,25‐dihydroxyvitamin D₃. It is essential for calcium absorption and bone homeostasis, as illustrated by loss‐of‐function models that recapitulate human bone and growth plate abnormalities. Moreover, VDR exhibits dual binding pockets that enable both genomic and rapid, non‐genomic responses and regulates an extensive portion of the genome, underscoring its ubiquitous presence in diverse tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its skeletal functions, VDR plays critical roles in modulating immune and barrier functions. It can directly attenuate inflammatory signaling—for example, through interactions that inhibit NF‐κB activation and repress proinflammatory cytokines such as IL‐17—and is essential for maintaining the integrity of intestinal epithelial junctions, thereby protecting against colitis. In addition, VDR influences the composition of the gut microbiota and is implicated in adipocyte biology and respiratory health, extending its impact to metabolic and pulmonary systems."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nVDR also contributes to detoxification and metabolic regulation. It functions as a receptor for not only vitamin D but also for secondary bile acids such as lithocholic acid, thereby inducing the expression of cytochrome P450 enzymes (e.g., CYP3A) that are responsible for detoxifying harmful compounds. In this context, VDR activity intersects with other nuclear receptors and is finely tuned by ligand‐dependent structural dynamics that influence coactivator recruitment and gene transcription."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nGenetic polymorphisms of the VDR gene have been widely studied and linked to susceptibility to a range of diseases. Variants have been associated with autoimmune disorders such as rheumatoid arthritis and systemic lupus erythematosus, metabolic and infectious diseases including type 1 diabetes and tuberculosis, and various cancers like prostate, breast, and colorectal cancer. In bone, specific VDR haplotypes correlate with reduced mRNA expression and an elevated fracture risk, while other studies show associations with asthma, atopy, and even alterations in fetal growth. Overall, these associations underscore the importance of VDR genetic variability in modulating disease risk and therapeutic responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "19", "end_ref": "37"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nVDR expression is not confined to classical target organs; it is also present in the brain, reproductive tissues, and muscle. In the human brain, both neurons and glial cells express VDR along with the activating enzyme 1α‐hydroxylase, suggesting a role in neural autocrine/paracrine signaling. Similarly, VDR in the testis and other reproductive structures—as well as its emerging role in modulating mitochondrial function and dynamics in skeletal muscle—points to broader functions in neuroendocrine regulation and energy metabolism."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "38", "end_ref": "41"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional studies reveal that VDR signaling interconnects with other regulatory pathways. For example, VDR activation can modulate the expression of metabolic regulators such as PPARδ, and its dynamic interplay with coactivators and other nuclear receptors further refines its transcriptional output. Such mechanistic insights provide a foundation for understanding how VDR activity influences treatment responses and disease outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "42"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Roger Bouillon, Geert Carmeliet, Lieve Verlinden, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D and human health: lessons from vitamin D receptor null mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocr Rev (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/er.2008-0004"}], "href": "https://doi.org/10.1210/er.2008-0004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18694980"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18694980"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mark R Haussler, Peter W Jurutka, Mathew Mizwicki, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D receptor (VDR)-mediated actions of 1α,25(OH)₂vitamin D₃: genomic and non-genomic mechanisms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Best Pract Res Clin Endocrinol Metab (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.beem.2011.05.010"}], "href": "https://doi.org/10.1016/j.beem.2011.05.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21872797"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21872797"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Anthony W Norman "}, {"type": "b", "children": [{"type": "t", "text": "Minireview: vitamin D receptor: new assignments for an already busy receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2006-0946"}], "href": "https://doi.org/10.1210/en.2006-0946"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16946007"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16946007"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sreeram V Ramagopalan, Andreas Heger, Antonio J Berlanga, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1101/gr.107920.110"}], "href": "https://doi.org/10.1101/gr.107920.110"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20736230"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20736230"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yunzi Chen, Jing Zhang, Xin Ge, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D receptor inhibits nuclear factor κB activation by interacting with IκB kinase β protein."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M113.467670"}], "href": "https://doi.org/10.1074/jbc.M113.467670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23671281"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23671281"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Sneha Joshi, Luiz-Carlos Pantalena, Xikui K Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "1,25-dihydroxyvitamin D(3) ameliorates Th17 autoimmunity via transcriptional modulation of interleukin-17A."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.05020-11"}], "href": "https://doi.org/10.1128/MCB.05020-11"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21746882"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21746882"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Philip T Liu, Mirjam Schenk, Valencia P Walker, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Convergence of IL-1beta and VDR activation pathways in human TLR2/1-induced antimicrobial responses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0005810"}], "href": "https://doi.org/10.1371/journal.pone.0005810"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19503839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19503839"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Juan Kong, Zhongyi Zhang, Mark W Musch, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel role of the vitamin D receptor in maintaining the integrity of the intestinal mucosal barrier."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Physiol Gastrointest Liver Physiol (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1152/ajpgi.00398.2007"}], "href": "https://doi.org/10.1152/ajpgi.00398.2007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17962355"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17962355"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Weicheng Liu, Yunzi Chen, Maya Aharoni Golan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Intestinal epithelial vitamin D receptor signaling inhibits experimental colitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI65842"}], "href": "https://doi.org/10.1172/JCI65842"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23945234"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23945234"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Jun Wang, Louise B Thingholm, Jurgita Skiecevičienė, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng.3695"}], "href": "https://doi.org/10.1038/ng.3695"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27723756"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27723756"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Cherlyn Ding, Dan Gao, John Wilding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D signalling in adipose tissue."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Br J Nutr (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1017/S0007114512003285"}], "href": "https://doi.org/10.1017/S0007114512003285"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23046765"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23046765"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Wim Janssens, Roger Bouillon, Bart Claes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D deficiency is highly prevalent in COPD and correlates with variants in the vitamin D-binding gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Thorax (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/thx.2009.120659"}], "href": "https://doi.org/10.1136/thx.2009.120659"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19996341"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19996341"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Makoto Makishima, Timothy T Lu, Wen Xie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D receptor as an intestinal bile acid sensor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1070477"}], "href": "https://doi.org/10.1126/science.1070477"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12016314"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12016314"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Lionel Drocourt, Jean-Claude Ourlin, Jean-Marc Pascussi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression of CYP3A4, CYP2B6, and CYP2C9 is regulated by the vitamin D receptor pathway in primary human hepatocytes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M201323200"}], "href": "https://doi.org/10.1074/jbc.M201323200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11991950"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11991950"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Changcheng Zhou, Mahfoud Assem, Jessica C Tay, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Steroid and xenobiotic receptor and vitamin D receptor crosstalk mediates CYP24 expression and drug-induced osteomalacia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Invest (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1172/JCI27793"}], "href": "https://doi.org/10.1172/JCI27793"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16691293"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16691293"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Jun Zhang, Michael J Chalmers, Keith R Stayrook, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA binding alters coactivator interaction surfaces of the intact VDR-RXR complex."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Mol Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsmb.2046"}], "href": "https://doi.org/10.1038/nsmb.2046"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21478866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21478866"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Natacha Rochel, Fabrice Ciesielski, Julien Godet, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Common architecture of nuclear receptor heterodimers on DNA direct repeat elements with different spacings."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Struct Mol Biol (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nsmb.2054"}], "href": "https://doi.org/10.1038/nsmb.2054"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21478865"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21478865"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Emilie D'Aldebert, Marie-Jeanne Biyeyeme Bi Mve, Martine Mergey, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bile salts control the antimicrobial peptide cathelicidin through nuclear receptors in the human biliary epithelium."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gastroenterology (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1053/j.gastro.2008.12.040"}], "href": "https://doi.org/10.1053/j.gastro.2008.12.040"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19245866"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19245866"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Yongji Wang, Hector F DeLuca "}, {"type": "b", "children": [{"type": "t", "text": "Is the vitamin d receptor found in muscle?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Endocrinology (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/en.2010-1109"}], "href": "https://doi.org/10.1210/en.2010-1109"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21190957"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21190957"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Young Ho Lee, Sang-Cheol Bae, Sung Jae Choi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Associations between vitamin D receptor polymorphisms and susceptibility to rheumatoid arthritis and systemic lupus erythematosus: a meta-analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Rep (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11033-010-0477-4"}], "href": "https://doi.org/10.1007/s11033-010-0477-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21110115"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21110115"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Marielle Gascon-Barré, Christian Demers, Ali Mirshahi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The normal liver harbors the vitamin D nuclear receptor in nonparenchymal and biliary epithelial cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hepatology (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1053/jhep.2003.50176"}], "href": "https://doi.org/10.1053/jhep.2003.50176"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12717384"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12717384"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Julio C Delgado, Andres Baena, Sok Thim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ethnic-specific genetic associations with pulmonary tuberculosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Infect Dis (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/344891"}], "href": "https://doi.org/10.1086/344891"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12404162"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12404162"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Haojie Li, Meir J Stampfer, J Bruce W Hollis, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A prospective study of plasma vitamin D metabolites, vitamin D receptor polymorphisms, and prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Med (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pmed.0040103"}], "href": "https://doi.org/10.1371/journal.pmed.0040103"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17388667"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17388667"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Esther M John, Gary G Schwartz, Jocelyn Koo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sun exposure, vitamin D receptor gene polymorphisms, and risk of advanced prostate cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-04-3134"}], "href": "https://doi.org/10.1158/0008-5472.CAN-04-3134"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15958597"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15958597"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Mathilde Touvier, Doris S M Chan, Rosa Lau, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Meta-analyses of vitamin D intake, 25-hydroxyvitamin D status, vitamin D receptor polymorphisms, and colorectal cancer risk."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Epidemiol Biomarkers Prev (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/1055-9965.EPI-10-1141"}], "href": "https://doi.org/10.1158/1055-9965.EPI-10-1141"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21378269"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21378269"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Nair Lopes, Bárbara Sousa, Diana Martins, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Alterations in Vitamin D signalling and metabolic pathways in breast cancer progression: a study of VDR, CYP27B1 and CYP24A1 expression in benign and malignant breast lesions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1471-2407-10-483"}], "href": "https://doi.org/10.1186/1471-2407-10-483"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20831823"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20831823"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Yue Fang, Joyce B J van Meurs, Arnold d'Alesio, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Promoter and 3'-untranslated-region haplotypes in the vitamin d receptor gene predispose to osteoporotic fracture: the rotterdam study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/497438"}], "href": "https://doi.org/10.1086/497438"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16252240"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16252240"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "André G Uitterlinden, Stuart H Ralston, Maria Luisa Brandi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The association between common vitamin D receptor gene variations and osteoporosis: a participant-level meta-analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann Intern Med (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7326/0003-4819-145-4-200608150-00005"}], "href": "https://doi.org/10.7326/0003-4819-145-4-200608150-00005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16908916"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16908916"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Ammarin Thakkinstian, Catherine D'Este, John Eisman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Meta-analysis of molecular association studies: vitamin D receptor gene polymorphisms and BMD as a case study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Bone Miner Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1359/JBMR.0301265"}], "href": "https://doi.org/10.1359/JBMR.0301265"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15040830"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15040830"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "P M Brett, P Zygogianni, G S Griffiths, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional gene polymorphisms in aggressive and chronic periodontitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Dent Res (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/154405910508401211"}], "href": "https://doi.org/10.1177/154405910508401211"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16304445"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16304445"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "Benjamin A Raby, Ross Lazarus, Edwin K Silverman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of vitamin D receptor gene polymorphisms with childhood and adult asthma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Respir Crit Care Med (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1164/rccm.200404-447OC"}], "href": "https://doi.org/10.1164/rccm.200404-447OC"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15282200"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15282200"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "Audrey H Poon, Catherine Laprise, Mathieu Lemire, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of vitamin D receptor genetic variants with susceptibility to asthma and atopy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Respir Crit Care Med (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1164/rccm.200403-412OC"}], "href": "https://doi.org/10.1164/rccm.200403-412OC"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15282199"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15282199"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Sotoodeh Abhary, Alex W Hewitt, Kathryn P Burdon, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A systematic meta-analysis of genetic association studies for diabetic retinopathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Diabetes (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2337/db09-0059"}], "href": "https://doi.org/10.2337/db09-0059"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19587357"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19587357"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "Julia A Newton-Bishop, Samantha Beswick, Juliette Randerson-Moor, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Serum 25-hydroxyvitamin D3 levels are associated with breslow thickness at presentation and survival from melanoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Oncol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1200/JCO.2009.22.1135"}], "href": "https://doi.org/10.1200/JCO.2009.22.1135"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19770375"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19770375"}]}, {"type": "r", "ref": 35, "children": [{"type": "t", "text": "Lisa M Bodnar, Janet M Catov, Joseph M Zmuda, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Maternal serum 25-hydroxyvitamin D concentrations are associated with small-for-gestational age births in white women."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Nutr (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3945/jn.109.119636"}], "href": "https://doi.org/10.3945/jn.109.119636"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20200114"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20200114"}]}, {"type": "r", "ref": 36, "children": [{"type": "t", "text": "P M Timms, N Mannan, G A Hitman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Circulating MMP9, vitamin D and variation in the TIMP-1 response with VDR genotype: mechanisms for inflammatory damage in chronic disorders?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "QJM (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/qjmed/95.12.787"}], "href": "https://doi.org/10.1093/qjmed/95.12.787"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12454321"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12454321"}]}, {"type": "r", "ref": 37, "children": [{"type": "t", "text": "John J McGrath, Sukanta Saha, Thomas H J Burne, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A systematic review of the association between common single nucleotide polymorphisms and 25-hydroxyvitamin D concentrations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Steroid Biochem Mol Biol (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jsbmb.2010.03.073"}], "href": "https://doi.org/10.1016/j.jsbmb.2010.03.073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20363324"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20363324"}]}, {"type": "r", "ref": 38, "children": [{"type": "t", "text": "Darryl W Eyles, Steven Smith, Robert Kinobe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Distribution of the vitamin D receptor and 1 alpha-hydroxylase in human brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Chem Neuroanat (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jchemneu.2004.08.006"}], "href": "https://doi.org/10.1016/j.jchemneu.2004.08.006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15589699"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15589699"}]}, {"type": "r", "ref": 39, "children": [{"type": "t", "text": "Martin Blomberg Jensen, John E Nielsen, Anne Jørgensen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Vitamin D receptor and vitamin D metabolizing enzymes are expressed in the human male reproductive tract."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Reprod (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/humrep/deq024"}], "href": "https://doi.org/10.1093/humrep/deq024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20172873"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20172873"}]}, {"type": "r", "ref": 40, "children": [{"type": "t", "text": "Zachary C Ryan, Theodore A Craig, Clifford D Folmes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "1α,25-Dihydroxyvitamin D3 Regulates Mitochondrial Oxygen Consumption and Dynamics in Human Skeletal Muscle Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M115.684399"}], "href": "https://doi.org/10.1074/jbc.M115.684399"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26601949"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26601949"}]}, {"type": "r", "ref": 41, "children": [{"type": "t", "text": "Lisa Ceglia, Sathit Niramitmahapanya, Mauricio da Silva Morais, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A randomized study on the effect of vitamin D₃ supplementation on skeletal muscle morphology and vitamin D receptor concentration in older women."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Endocrinol Metab (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/jc.2013-2820"}], "href": "https://doi.org/10.1210/jc.2013-2820"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24108316"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24108316"}]}, {"type": "r", "ref": 42, "children": [{"type": "t", "text": "Thomas W Dunlop, Sami Väisänen, Christian Frank, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The human peroxisome proliferator-activated receptor delta gene is a primary target of 1alpha,25-dihydroxyvitamin D3 and its nuclear receptor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jmb.2005.03.060"}], "href": "https://doi.org/10.1016/j.jmb.2005.03.060"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15890193"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15890193"}]}, {"type": "r", "ref": 43, "children": [{"type": "t", "text": "Shinji Kishi, Cheng Cheng, Deborah French, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Ancestry and pharmacogenetics of antileukemic drug toxicity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2006-10-054528"}], "href": "https://doi.org/10.1182/blood-2006-10-054528"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17264302"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17264302"}]}]}]}
|
| Synonyms | PPP1R163, NR1I1 |
| Proteins | VDR_HUMAN |
| NCBI Gene ID | 7421 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
VDR has 11,310 functional associations with biological entities spanning 9 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 114 datasets.
Click the + buttons to view associations for VDR from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of VDR gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of VDR gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of VDR gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of VDR gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of VDR gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| Biocarta Pathways | pathways involving VDR protein from the Biocarta Pathways dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of VDR gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of VDR gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| BioGPS Mouse Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of VDR gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of VDR gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of VDR gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of VDR gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene Mutation Profiles | cell lines with VDR gene mutations from the CCLE Cell Line Gene Mutation Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of VDR gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of VDR gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ClinVar Gene-Phenotype Associations | phenotypes associated with VDR gene from the curated ClinVar Gene-Phenotype Associations dataset. | |
| ClinVar Gene-Phenotype Associations 2025 | phenotypes associated with VDR gene from the curated ClinVar Gene-Phenotype Associations 2025 dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of VDR gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing VDR protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with VDR protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| CORUM Protein Complexes | protein complexs containing VDR protein from the CORUM Protein Complexes dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of VDR gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with VDR gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with VDR gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with VDR gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| dbGAP Gene-Trait Associations | traits associated with VDR gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of VDR protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DepMap CRISPR Gene Dependency | cell lines with fitness changed by VDR gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset. | |
| DISEASES Curated Gene-Disease Association Evidence Scores | diseases involving VDR gene from the DISEASES Curated Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with VDR gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with VDR gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with VDR gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| DrugBank Drug Targets | interacting drugs for VDR protein from the curated DrugBank Drug Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at VDR gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of VDR gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of VDR gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing VDR from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GAD Gene-Disease Associations | diseases associated with VDR gene in GWAS and other genetic association datasets from the GAD Gene-Disease Associations dataset. | |
| GAD High Level Gene-Disease Associations | diseases associated with VDR gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of VDR gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with VDR gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing VDR from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of VDR gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of VDR gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of VDR gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of VDR gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of VDR gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of VDR gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving VDR gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving VDR gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing VDR protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing VDR protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by VDR gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by VDR gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of VDR gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of VDR gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of VDR gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Guide to Pharmacology Chemical Ligands of Receptors | ligands (chemical) binding VDR receptor from the curated Guide to Pharmacology Chemical Ligands of Receptors dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with VDR gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with VDR gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with VDR gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of VDR gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HMDB Metabolites of Enzymes | interacting metabolites for VDR protein from the curated HMDB Metabolites of Enzymes dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of VDR gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of VDR gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of VDR gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HPO Gene-Disease Associations | phenotypes associated with VDR gene by mapping known disease genes to disease phenotypes from the HPO Gene-Disease Associations dataset. | |
| Hub Proteins Protein-Protein Interactions | interacting hub proteins for VDR from the curated Hub Proteins Protein-Protein Interactions dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with VDR gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for VDR protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of VDR gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of VDR gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of VDR gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| KEA Substrates of Kinases | kinases that phosphorylate VDR protein from the curated KEA Substrates of Kinases dataset. | |
| KEGG Pathways 2026 | pathways involving VDR protein from the KEGG Pathways 2026 dataset. | |
| Kinase Library Serine Threonine Kinome Atlas | kinases that phosphorylate VDR protein from the Kinase Library Serine Threonine Atlas dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of VDR gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of VDR gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with VDR gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of VDR gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of VDR gene from the LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| LOCATE Curated Protein Localization Annotations | cellular components containing VDR protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain VDR protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by VDR gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting VDR gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of VDR gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by VDR gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of VDR gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of VDR gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| OMIM Gene-Disease Associations | phenotypes associated with VDR gene from the curated OMIM Gene-Disease Associations dataset. | |
| PANTHER Pathways | pathways involving VDR protein from the PANTHER Pathways dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for VDR from the Pathway Commons Protein-Protein Interactions dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving VDR protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving VDR protein from the Wikipathways PFOCR 2024 dataset. | |
| Phosphosite Textmining Biological Term Annotations | biological terms co-occuring with VDR protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset. | |
| PhosphoSitePlus Substrates of Kinases | kinases that phosphorylate VDR protein from the curated PhosphoSitePlus Substrates of Kinases dataset. | |
| PID Pathways | pathways involving VDR protein from the PID Pathways dataset. | |
| Reactome Pathways 2014 | pathways involving VDR protein from the Reactome Pathways dataset. | |
| Reactome Pathways 2024 | pathways involving VDR protein from the Reactome Pathways 2024 dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of VDR gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of VDR gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at VDR gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of VDR gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of VDR gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of VDR gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of VDR gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of VDR gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of VDR gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of VDR gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of VDR protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of VDR protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with VDR protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| WikiPathways Pathways 2014 | pathways involving VDR protein from the Wikipathways Pathways 2014 dataset. | |
| WikiPathways Pathways 2024 | pathways involving VDR protein from the WikiPathways Pathways 2024 dataset. | |