VPS9D1-AS1 Gene

Name VPS9D1 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nVPS9D1‐AS1, also known as MYU, has emerged as an important long non‐coding RNA whose overexpression contributes to tumorigenesis in diverse malignancies. In colon cancer, VPS9D1‐AS1 acts as a direct target of c‐Myc and drives cell proliferation by interacting with hnRNP‐K to stabilize CDK6 expression, while its elevated levels in colorectal cancer are associated with poor prognosis. In hepatocellular carcinoma, VPS9D1‐AS1 binds to the HuR protein, thereby enhancing the stability of CDK4 mRNA and promoting tumor growth; furthermore, a functional polymorphism in VPS9D1‐AS1 has been shown to affect its binding with miR‑361‑3p and correlate with the clinical stage of colorectal tumors."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn prostate cancer and other solid tumors such as non‐small cell lung, ovarian, and endometrial cancers, VPS9D1‐AS1 functions predominantly as an oncogene by serving as a competitive endogenous RNA. In prostate cancer, distinct studies report that VPS9D1‐AS1 promotes cell growth and migration by upregulating c‑Myc through sponging miR‑184 and by modulating the miR‑4739/MEF2D as well as miR‑187‑3p/FGFRL1 axes. In non‐small cell lung cancer, heightened expression correlates with lymph node metastasis and reduced survival. Similarly, in ovarian cancer, VPS9D1‐AS1 sequesters miR‑6827‑5p to elevate HMGA1 expression, and in endometrial cancer it sustains tumorigenesis via the miR‑187‑3p/S100A4 axis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "10"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn addition to its role in solid tumors, VPS9D1‐AS1 also contributes to hematologic malignancies. In acute lymphoblastic leukemia, for instance, it promotes cell proliferation through a competing endogenous RNA mechanism that modulates the miR‑491‑5p/miR‑214‑3p/GPX1 axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yoshihiro Kawasaki, Mimon Komiya, Kosuke Matsumura, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA MYU promotes prostate cancer proliferation by mediating the miR-184/c-Myc axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2018.6661"}], "href": "https://doi.org/10.3892/or.2018.6661"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30132573"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30132573"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xiaobin Wang, Qiangjun Chen, Xi Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ZEB1 activated-VPS9D1-AS1 promotes the tumorigenesis and progression of prostate cancer by sponging miR-4739 to upregulate MEF2D."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2019.109557"}], "href": "https://doi.org/10.1016/j.biopha.2019.109557"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31918265"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31918265"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Jinjing Tan, Lei Yang "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA VPS9D1-AS1 overexpression predicts a poor prognosis in non-small cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2018.07.113"}], "href": "https://doi.org/10.1016/j.biopha.2018.07.113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30119235"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30119235"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Shaoyu Wang, Qiaomei Zheng, Jinhua Wang, et al. 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Synonyms MYU
NCBI Gene ID 100128881
API
Download Associations
Predicted Functions View VPS9D1-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View VPS9D1-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View VPS9D1-AS1's ARCHS4 Predicted Functions.

Functional Associations

VPS9D1-AS1 has 725 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for VPS9D1-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of VPS9D1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of VPS9D1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of VPS9D1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of VPS9D1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of VPS9D1-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of VPS9D1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of VPS9D1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.