VTRNA1-3 Gene

HGNC Family Non-coding RNAs
Name vault RNA 1-3
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe provided abstract (1) does not mention VTRNA1-3. Instead, it focuses on the discovery and functional characterization of KCTD3 as an accessory subunit of native HCN3 channel complexes. KCTD3 binds specifically to the C-terminal region of HCN3, a binding that is essential for its regulatory role. The interaction of KCTD3 enhances cell surface expression and dramatically increases the current density of HCN3 channels, suggesting that it plays a significant role in modulating the channel’s biophysical properties and possibly neuronal excitability. Notably, while HCN3 can also interact with TRIP8b (another accessory protein), the study found no evidence for a complex containing both TRIP8b and KCTD3, indicating that KCTD3 acts in a distinct regulatory pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiaochun Cao-Ehlker, Xiangang Zong, Verena Hammelmann, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Up-regulation of hyperpolarization-activated cyclic nucleotide-gated channel 3 (HCN3) by specific interaction with K+ channel tetramerization domain-containing protein 3 (KCTD3)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M112.434803"}], "href": "https://doi.org/10.1074/jbc.M112.434803"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23382386"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23382386"}]}]}]}
Synonyms VAULTRC3, VR3, HVG3, HVG-3
NCBI Gene ID 56662
API
Download Associations
Predicted Functions View VTRNA1-3's ARCHS4 Predicted Functions.
Co-expressed Genes View VTRNA1-3's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View VTRNA1-3's ARCHS4 Predicted Functions.

Functional Associations

VTRNA1-3 has 935 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for VTRNA1-3 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of VTRNA1-3 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of VTRNA1-3 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of VTRNA1-3 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of VTRNA1-3 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at VTRNA1-3 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of VTRNA1-3 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of VTRNA1-3 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of VTRNA1-3 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of VTRNA1-3 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of VTRNA1-3 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of VTRNA1-3 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of VTRNA1-3 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
KnockTF Gene Expression Profiles with Transcription Factor Perturbations transcription factor perturbations changing expression of VTRNA1-3 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of VTRNA1-3 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at VTRNA1-3 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.