VWC2L-IT1 Gene

Name VWC2L intronic transcript 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe provided abstracts do not directly mention VWC2L‐IT1. Instead, they describe the functions of members of the KRAB‐zinc finger protein family—specifically RSL1 (and in one case RSL2)—which act as transcriptional repressors that modulate sex‐biased gene expression in the liver. For example, one study (abstract 1"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "shows that RSL1 binds to an enhancer region upstream of the sex‐limited protein (SLP) gene, recruits the corepressor KAP1/TRIM28 to this site, and interacts dynamically with the hormone‐activated STAT5b. This interplay between a hormonal activator and a KRAB‐ZFP repressor helps shape epigenetic modifications (such as DNA methylation) and thus fine‐tunes the transcriptional response to hormonal cues in a sex‐dependent manner.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAnother abstract (abstract 2"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "documents that RSL1 enforces male‐predominant liver gene expression and that its absence leads to metabolic dysregulation. In female mice lacking RSL1, changes in both liver and adipose tissue gene expression correlate with increased weight gain and altered metabolic responses on a high‐fat diet. These findings suggest that KRAB‐zinc finger proteins can also act as systemic modulators by influencing liver–adipose communication, thereby buffering against gene expression noise under metabolic stress.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA third study (abstract 3"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "further supports the role of KRAB‐ZFPs in regulating sexually dimorphic traits by demonstrating that the combined loss of RSL1 and RSL2 in female mouse liver leads to aberrant expression of male‐specific proteins and enzymes involved in steroid metabolism. These molecular changes are associated with alterations in pheromone presentation and reproductive physiology, evidenced by changes in urinary protein levels and pubertal timing. In this way, liver‐specific transcriptional repression by RSL factors appears to exert far‐reaching effects on both hormonal and pheromonal signals that govern reproductive behaviors.\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAlthough the abstracts do not explicitly address VWC2L‐IT1, if VWC2L‐IT1 were to share a functional profile with these KRAB‐ZFPs it might be expected to participate in epigenetic modulation of gene expression—integrating hormonal inputs, recruiting corepressor complexes, and influencing downstream metabolic and reproductive processes. Further studies would be necessary to determine whether VWC2L‐IT1 contributes to similar regulatory networks.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Christopher J Krebs, David C Schultz, Diane M Robins "}, {"type": "b", "children": [{"type": "t", "text": "The KRAB zinc finger protein RSL1 regulates sex- and tissue-specific promoter methylation and dynamic hormone-responsive chromatin configuration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00615-12"}], "href": "https://doi.org/10.1128/MCB.00615-12"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22801370"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22801370"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Christopher J Krebs, Deqiang Zhang, Lei Yin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The KRAB zinc finger protein RSL1 modulates sex-biased gene expression in liver and adipose tissue to maintain metabolic homeostasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biol (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/MCB.00875-13"}], "href": "https://doi.org/10.1128/MCB.00875-13"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24190968"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24190968"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Christopher J Krebs, Diane M Robins "}, {"type": "b", "children": [{"type": "t", "text": "A pair of mouse KRAB zinc finger proteins modulates multiple indicators of female reproduction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biol Reprod (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1095/biolreprod.109.080846"}], "href": "https://doi.org/10.1095/biolreprod.109.080846"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20042539"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20042539"}]}]}]}
NCBI Gene ID 100885780
API
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Predicted Functions View VWC2L-IT1's ARCHS4 Predicted Functions.
Co-expressed Genes View VWC2L-IT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View VWC2L-IT1's ARCHS4 Predicted Functions.

Functional Associations

VWC2L-IT1 has 159 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 3 datasets.

Click the + buttons to view associations for VWC2L-IT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of VWC2L-IT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of VWC2L-IT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of VWC2L-IT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.