| HGNC Family | Pseudoautosomal regions |
| Name | WASH and IL9R antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nTLR13 (also referred to here as WASIR1) is an endosomal receptor that plays a central role in innate immunity by specifically sensing bacterial RNA. In particular, it recognizes a conserved sequence within the 23S ribosomal RNA—a region critical for ribozyme activity during peptide bond synthesis. This sequence‐specific detection is so precise that even single point mutations in the RNA molecule or methyl modifications (which occur in antibiotic‐resistant bacteria) can abolish receptor activation. Such modifications represent important bacterial immune evasion strategies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nUpon ligand binding, WASIR1/TLR13 initiates a MyD88‐ and TAK1‐dependent signaling cascade that culminates in the activation of NF‑κB and the induction of cytokines—including interleukin‑1β and type I interferons. This signaling is critical for mounting effective defenses against several pathogens. For instance, in experimental models, TLR13 contributes to host recognition of group B streptococcus and Streptococcus pyogenes, operating in tandem with other receptors (such as TLR2, TLR7, and TLR9) to ensure a robust inflammatory and antimicrobial response. Its involvement has also been observed in central nervous system infections, further highlighting its importance in pathogen-specific immune responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "8"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond ligand recognition and signaling, transcriptional regulation and tissue-specific expression of TLR13 (WASIR1) are key to its function. Its gene expression is controlled by several cis‑acting elements that interact with transcription factors such as Ets2, Sp1, and PU.1, while NF‑κB can act as a negative regulator. TLR13 is predominantly expressed in dendritic cells, macrophages, and neurons, but its expression can be upregulated in response to infections or inflammatory conditions—as seen in neurocysticercosis and even in muscle affected by chronic kidney disease. Recent structural studies of the TLR13–RNA complex have provided further insight into the molecular basis of its ligand specificity and activation mechanism."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "9", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bibhuti B Mishra, Uma Mahesh Gundra, Judy M Teale "}, {"type": "b", "children": [{"type": "t", "text": "Expression and distribution of Toll-like receptors 11-13 in the brain during murine neurocysticercosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neuroinflammation (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1742-2094-5-53"}], "href": "https://doi.org/10.1186/1742-2094-5-53"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19077284"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19077284"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhongcheng Shi, Zhenyu Cai, Amir Sanchez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel Toll-like receptor that recognizes vesicular stomatitis virus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M110.159590"}], "href": "https://doi.org/10.1074/jbc.M110.159590"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21131352"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21131352"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Marina Oldenburg, Anne Krüger, Ruth Ferstl, et al. "}, {"type": "b", "children": [{"type": "t", "text": "TLR13 recognizes bacterial 23S rRNA devoid of erythromycin resistance-forming modification."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1220363"}], "href": "https://doi.org/10.1126/science.1220363"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22821982"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22821982"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Asa Hidmark, Antonia von Saint Paul, Alexander H Dalpke "}, {"type": "b", "children": [{"type": "t", "text": "Cutting edge: TLR13 is a receptor for bacterial RNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1200898"}], "href": "https://doi.org/10.4049/jimmunol.1200898"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22896636"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22896636"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiao-Dong Li, Zhijian James Chen "}, {"type": "b", "children": [{"type": "t", "text": "Sequence specific detection of bacterial 23S ribosomal RNA by TLR13."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.00102"}], "href": "https://doi.org/10.7554/eLife.00102"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23110254"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23110254"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Giacomo Signorino, Nastaran Mohammadi, Francesco Patanè, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Role of Toll-like receptor 13 in innate immune recognition of group B streptococci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Infect Immun (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/IAI.02282-14"}], "href": "https://doi.org/10.1128/IAI.02282-14"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25225249"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25225249"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Christina Fieber, Marton Janos, Tina Koestler, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Innate immune response to Streptococcus pyogenes depends on the combined activation of TLR13 and TLR2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0119727"}], "href": "https://doi.org/10.1371/journal.pone.0119727"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25756897"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25756897"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Agata Famà, Angelina Midiri, Giuseppe Mancuso, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nucleic Acid-Sensing Toll-Like Receptors Play a Dominant Role in Innate Immune Recognition of Pneumococci."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "mBio (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1128/mBio.00415-20"}], "href": "https://doi.org/10.1128/mBio.00415-20"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32209688"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32209688"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Zhongcheng Shi, Zhenyu Cai, Shu Wen, et al. 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| Synonyms | NCRNA00286B |
| NCBI Gene ID | 100128260 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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WASIR1 has 6 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.
Click the + buttons to view associations for WASIR1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of WASIR1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |