WDFY3-AS2 Gene

Name WDFY3 antisense RNA 2
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn lung adenocarcinoma (LUAD), WDFY3‑AS2 is markedly up‐regulated, and its transcription is enhanced by the upstream factor USF1. Functionally, increased WDFY3‑AS2 expression promotes cell proliferation, migration, and invasion while inhibiting apoptosis. Mechanistically, WDFY3‑AS2 acts by binding and sequestering miR‑491‑5p, thereby relieving its inhibition on the oncogene zinc finger protein 703 (ZNF703), which further drives LUAD progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the context of breast cancer, although detailed functional studies remain limited, dysregulation of long non‑coding RNAs such as WDFY3‑AS2 is frequently observed. These findings suggest that WDFY3‑AS2 may play an important regulatory role in breast cancer tumorigenesis and could represent a novel candidate for further investigation as both a biomarker and a therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn esophageal squamous cell carcinoma (ESCC), WDFY3‑AS2 is typically down‑regulated in tumor tissues and cell lines. Reduced expression of WDFY3‑AS2 correlates with advanced TNM stage, lymph node metastasis, and poor patient prognosis. Functional experiments demonstrated that overexpression of WDFY3‑AS2 suppresses cell proliferation, invasion, and epithelial‑to‑mesenchymal transition (EMT) by acting as a competing endogenous RNA (ceRNA) to sponge miR‑2355‑5p. This sequestration enhances the expression of SOCS2, which in turn dampens the JAK2/Stat5 signaling pathway—an axis critical for tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nEmerging evidence in oral squamous cell carcinoma (OSCC) highlights the dual nature of WDFY3‑AS2 in cancer biology. In OSCC, WDFY3‑AS2 has been linked to the modulation of β‑catenin expression and the regulation of tumor immunity, indicating that its impact on the disease is multifaceted. These findings underscore the complexity of WDFY3‑AS2’s roles across different cancer types and support its potential as both a prognostic biomarker and a therapeutic target in OSCC."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Ping Ren, Xiaodong Hong, Liang Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "USF1-induced overexpression of long noncoding RNA WDFY3-AS2 promotes lung adenocarcinoma progression via targeting miR-491-5p/ZNF703 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Carcinog (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/mc.23181"}], "href": "https://doi.org/10.1002/mc.23181"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32275336"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32275336"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Daniel Rodrigues de Bastos, Maria A Nagai "}, {"type": "b", "children": [{"type": "t", "text": "In silico analyses identify lncRNAs: WDFY3-AS2, BDNF-AS and AFAP1-AS1 as potential prognostic factors for patients with triple-negative breast tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0232284"}], "href": "https://doi.org/10.1371/journal.pone.0232284"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32401758"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32401758"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qing Zhang, Fangxia Guan, Tianli Fan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA WDFY3-AS2 suppresses proliferation and invasion in oesophageal squamous cell carcinoma by regulating miR-2355-5p/SOCS2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.15488"}], "href": "https://doi.org/10.1111/jcmm.15488"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32536038"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32536038"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiang Lin, Jian-Ming Ding, Xiong-Zhou Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Immunity-related long noncoding RNA WDFY3-AS2 inhibited cell proliferation and metastasis through Wnt/β-catenin signaling in oral squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Arch Oral Biol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.archoralbio.2023.105625"}], "href": "https://doi.org/10.1016/j.archoralbio.2023.105625"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36657277"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36657277"}]}]}]}
Synonyms FBI4, NCRNA00247, C4ORF12
NCBI Gene ID 404201
API
Download Associations
Predicted Functions View WDFY3-AS2's ARCHS4 Predicted Functions.
Co-expressed Genes View WDFY3-AS2's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View WDFY3-AS2's ARCHS4 Predicted Functions.

Functional Associations

WDFY3-AS2 has 2,026 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 30 datasets.

Click the + buttons to view associations for WDFY3-AS2 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of WDFY3-AS2 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of WDFY3-AS2 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of WDFY3-AS2 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of WDFY3-AS2 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of WDFY3-AS2 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of WDFY3-AS2 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with WDFY3-AS2 gene from the CellMarker Gene-Cell Type Associations dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of WDFY3-AS2 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of WDFY3-AS2 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at WDFY3-AS2 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of WDFY3-AS2 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of WDFY3-AS2 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing WDFY3-AS2 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of WDFY3-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of WDFY3-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of WDFY3-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of WDFY3-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of WDFY3-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of WDFY3-AS2 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of WDFY3-AS2 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of WDFY3-AS2 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of WDFY3-AS2 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWASdb SNP-Disease Associations diseases associated with WDFY3-AS2 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with WDFY3-AS2 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of WDFY3-AS2 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of WDFY3-AS2 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain WDFY3-AS2 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of WDFY3-AS2 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at WDFY3-AS2 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of WDFY3-AS2 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.