| HGNC Family | Y box binding proteins (YBX) |
| Name | Y box binding protein 1 |
| Description | This gene encodes a highly conserved cold shock domain protein that has broad nucleic acid binding properties. The encoded protein functions as both a DNA and RNA binding protein and has been implicated in numerous cellular processes including regulation of transcription and translation, pre-mRNA splicing, DNA reparation and mRNA packaging. This protein is also a component of messenger ribonucleoprotein (mRNP) complexes and may have a role in microRNA processing. This protein can be secreted through non-classical pathways and functions as an extracellular mitogen. Aberrant expression of the gene is associated with cancer proliferation in numerous tissues. This gene may be a prognostic marker for poor outcome and drug resistance in certain cancers. Alternate splicing results in multiple transcript variants. Pseudogenes of this gene are found on multiple chromosomes. [provided by RefSeq, Sep 2015] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nY‐box binding protein‑1 (YBX1) is an evolutionarily conserved nucleic acid–binding protein characterized by its cold shock domain that enables interactions with DNA and RNA. It functions as a multifunctional regulator of gene expression by modulating transcription, translation, mRNA splicing, and even participating in DNA repair and viral replication. In fact, early studies demonstrated that YBX1 forms oligomers and associates with key repair factors—such as stimulating base excision repair through its interaction with NEIL2—thereby safeguarding genome integrity while also being co‐opted by viruses to support their replication cycles."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nYBX1 exerts profound effects on cell proliferation and oncogenic signaling. Its regulated phosphorylation (for example, by Akt at Ser102) promotes nuclear translocation where it transcriptionally activates key cell cycle regulators—including cyclins and EMT‐inducing factors such as Snail1 and MET—to drive tumor growth and metastasis. These studies also link YBX1 with enhanced cap‑independent translation and suggest that its upregulation, via factors like Twist, underpins drug resistance and cancer stem cell maintenance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "15"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its roles in classical gene regulation, YBX1 is instrumental in coordinating the cellular stress response and RNA homeostasis. Under stress conditions, YBX1 promotes the assembly of stress granules by directly binding to the 5′ untranslated region of mRNAs encoding stress‐granule nucleators such as G3BP1. In addition, by undergoing liquid–liquid phase separation, YBX1 selectively recruits small noncoding RNAs—including tRNA‐derived fragments and microRNAs—into extracellular vesicles, thereby influencing intercellular communication and the purging of excess RNAs."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "16", "end_ref": "20"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nA complex network of noncoding RNAs further fine‑tunes YBX1 function. Specific tRNA‑derived fragments can displace oncogenic mRNA transcripts from YBX1, contributing to tumor‐suppressive effects. Moreover, several long noncoding RNAs—including GAS5, HULC, MIR22HG, LNCAROD, TP53TG1—and circular RNAs such as circFAT1(e2) interact with YBX1 to regulate its turnover, post‑translational modification, subcellular localization, and transcriptional activity. These RNA–protein interactions modulate processes including cell cycle progression, epithelial–mesenchymal transition (EMT), and chemoresistance in multiple cancer types."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "21", "end_ref": "30"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nYBX1 additionally contributes to oncogenesis and therapeutic resistance across a variety of malignancies. By transcriptionally upregulating genes that promote cell survival, stemness, and multidrug resistance (including MDR1, MET, CD44, and BCL2), YBX1 integrates into key oncogenic signaling pathways such as ERK and PI3K/AKT. Its upregulation by oncogenic factors like Twist, c‑Myc, and p73—as well as its stable incorporation into transcriptional complexes with coactivators like APE1 and chromatin regulators—further consolidates its role in tumor progression, metastasis (for example, through EMT in prostate cancer and osteosarcoma), and the maintenance of leukemic cell survival."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "31", "end_ref": "40"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Per S Holm, Stephan Bergmann, Karsten Jurchott, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 relocates to the nucleus in adenovirus-infected cells and facilitates viral replication by inducing E2 gene expression through the E2 late promoter."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M106955200"}], "href": "https://doi.org/10.1074/jbc.M106955200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11788582"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11788582"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Cathelijne P A M Kloks, Christian A E M Spronk, Edwin Lasonder, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The solution structure and DNA-binding properties of the cold-shock domain of the human Y-box protein YB-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Mol Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/jmbi.2001.5334"}], "href": "https://doi.org/10.1006/jmbi.2001.5334"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11851341"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11851341"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Hidetaka Uramoto, Hiroto Izumi, Tomoko Ise, et al. "}, {"type": "b", "children": [{"type": "t", "text": "p73 Interacts with c-Myc to regulate Y-box-binding protein-1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M200266200"}], "href": "https://doi.org/10.1074/jbc.M200266200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12080043"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12080043"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ute Raffetseder, Björn Frye, Thomas Rauen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Splicing factor SRp30c interaction with Y-box protein-1 confers nuclear YB-1 shuttling and alternative splice site selection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M212518200"}], "href": "https://doi.org/10.1074/jbc.M212518200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12604611"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12604611"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Karsten Jurchott, Stephan Bergmann, Ulrike Stein, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 as a cell cycle-regulated transcription factor facilitating cyclin A and cyclin B1 gene expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M212966200"}], "href": "https://doi.org/10.1074/jbc.M212966200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12695516"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12695516"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Soumita Das, Ranajoy Chattopadhyay, Kishor K Bhakat, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Stimulation of NEIL2-mediated oxidized base excision repair via YB-1 interaction during oxidative stress."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M704672200"}], "href": "https://doi.org/10.1074/jbc.M704672200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17686777"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17686777"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Kiyoshi Higashi, Yutaka Inagaki, Ko Fujimori, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Interferon-gamma interferes with transforming growth factor-beta signaling through direct interaction of YB-1 with Smad3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M302339200"}], "href": "https://doi.org/10.1074/jbc.M302339200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12917425"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12917425"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Isabelle Gaudreault, David Guay, Michel Lebel "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 promotes strand separation in vitro of duplex DNA containing either mispaired bases or cisplatin modifications, exhibits endonucleolytic activities and binds several DNA repair proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkh170"}], "href": "https://doi.org/10.1093/nar/gkh170"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14718551"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14718551"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Abdelaziz En-Nia, Emek Yilmaz, Uwe Klinge, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcription factor YB-1 mediates DNA polymerase alpha gene expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M413353200"}], "href": "https://doi.org/10.1074/jbc.M413353200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15615704"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15615704"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Brent W Sutherland, Jill Kucab, Joyce Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Akt phosphorylates the Y-box binding protein 1 at Ser102 located in the cold shock domain and affects the anchorage-independent growth of breast cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/sj.onc.1208590"}], "href": "https://doi.org/10.1038/sj.onc.1208590"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15806160"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15806160"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Valentina Evdokimova, Cristina Tognon, Tony Ng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Translational activation of snail1 and other developmentally regulated transcription factors by YB-1 promotes an epithelial-mesenchymal transition."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ccr.2009.03.017"}], "href": "https://doi.org/10.1016/j.ccr.2009.03.017"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19411069"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19411069"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Björn C Frye, Sarah Halfter, Sonja Djudjaj, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Y-box protein-1 is actively secreted through a non-classical pathway and acts as an extracellular mitogen."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EMBO Rep (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/embor.2009.81"}], "href": "https://doi.org/10.1038/embor.2009.81"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19483673"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19483673"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Valentina Evdokimova, Cristina Tognon, Tony Ng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reduced proliferation and enhanced migration: two sides of the same coin? Molecular mechanisms of metastatic progression by YB-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/cc.8.18.9537"}], "href": "https://doi.org/10.4161/cc.8.18.9537"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19713745"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19713745"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "L C Cobbold, L A Wilson, K Sawicka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulated c-myc expression in multiple myeloma by internal ribosome entry results from increased interactions with and expression of PTB-1 and YB-1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/onc.2010.31"}], "href": "https://doi.org/10.1038/onc.2010.31"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20190818"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20190818"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Karen To, Abbas Fotovati, Kristen M Reipas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Y-box binding protein-1 induces the expression of CD44 and CD49f leading to enhanced self-renewal, mammosphere growth, and drug resistance."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-09-3155"}], "href": "https://doi.org/10.1158/0008-5472.CAN-09-3155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20332234"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20332234"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Syam Prakash Somasekharan, Amal El-Naggar, Gabriel Leprivier, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 regulates stress granule formation and tumor progression by translationally activating G3BP1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.201411047"}], "href": "https://doi.org/10.1083/jcb.201411047"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25800057"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25800057"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Shawn M Lyons, Chris Achorn, Nancy L Kedersha, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 regulates tiRNA-induced Stress Granule formation but not translational repression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkw418"}], "href": "https://doi.org/10.1093/nar/gkw418"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27174937"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27174937"}]}, {"type": "r", "ref": 18, "children": [{"type": "t", "text": "Olga A Kossinova, Alexander V Gopanenko, Svetlana N Tamkovich, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cytosolic YB-1 and NSUN2 are the only proteins recognizing specific motifs present in mRNAs enriched in exosomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Proteins Proteom (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbapap.2017.03.010"}], "href": "https://doi.org/10.1016/j.bbapap.2017.03.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28341602"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28341602"}]}, {"type": "r", "ref": 19, "children": [{"type": "t", "text": "Matthew J Shurtleff, Jun Yao, Yidan Qin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Broad role for YBX1 in defining the small noncoding RNA composition of exosomes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1712108114"}], "href": "https://doi.org/10.1073/pnas.1712108114"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29073095"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29073095"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Xiao-Man Liu, Liang Ma, Randy Schekman "}, {"type": "b", "children": [{"type": "t", "text": "Selective sorting of microRNAs into exosomes by phase-separated YBX1 condensates."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.71982"}], "href": "https://doi.org/10.7554/eLife.71982"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34766549"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34766549"}]}, {"type": "r", "ref": 21, "children": [{"type": "t", "text": "Hani Goodarzi, Xuhang Liu, Hoang C B Nguyen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2015.02.053"}], "href": "https://doi.org/10.1016/j.cell.2015.02.053"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25957686"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25957686"}]}, {"type": "r", "ref": 22, "children": [{"type": "t", "text": "Yongchao Liu, Jing Zhao, Wenhong Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA GAS5 enhances G1 cell cycle arrest via binding to YBX1 to regulate p21 expression in stomach cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep10159"}], "href": "https://doi.org/10.1038/srep10159"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25959498"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25959498"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "Angel Diaz-Lagares, Ana B Crujeiras, Paula Lopez-Serra, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Epigenetic inactivation of the p53-induced long noncoding RNA TP53 target 1 in human cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1608585113"}], "href": "https://doi.org/10.1073/pnas.1608585113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27821766"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27821766"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Dan Li, Xuefeng Liu, Jian Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA HULC modulates the phosphorylation of YB-1 through serving as a scaffold of extracellular signal-regulated kinase and YB-1 to enhance hepatocarcinogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hepatology (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/hep.29010"}], "href": "https://doi.org/10.1002/hep.29010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28027578"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28027578"}]}, {"type": "r", "ref": 25, "children": [{"type": "t", "text": "Xiaodong Zhao, Yanbo Liu, Shuo Yu "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA AWPPH promotes hepatocellular carcinoma progression through YBX1 and serves as a prognostic biomarker."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta Mol Basis Dis (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbadis.2017.04.014"}], "href": "https://doi.org/10.1016/j.bbadis.2017.04.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28428004"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28428004"}]}, {"type": "r", "ref": 26, "children": [{"type": "t", "text": "Wenmei Su, Shumei Feng, Xiuyuan Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Silencing of Long Noncoding RNA "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "MIR22HG"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " Triggers Cell Survival/Death Signaling via Oncogenes YBX1, MET, and p21 in Lung Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/0008-5472.CAN-18-0222"}], "href": "https://doi.org/10.1158/0008-5472.CAN-18-0222"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29669758"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29669758"}]}, {"type": "r", "ref": 27, "children": [{"type": "t", "text": "Jian Fang, Han Hong, Xiaofeng Xue, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A novel circular RNA, circFAT1(e2), inhibits gastric cancer progression by targeting miR-548g in the cytoplasm and interacting with YBX1 in the nucleus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2018.10.040"}], "href": "https://doi.org/10.1016/j.canlet.2018.10.040"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30419346"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30419346"}]}, {"type": "r", "ref": 28, "children": [{"type": "t", "text": "Zhenzi Peng, Jun Wang, Bin Shan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The long noncoding RNA LINC00312 induces lung adenocarcinoma migration and vasculogenic mimicry through directly binding YBX1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-018-0920-z"}], "href": "https://doi.org/10.1186/s12943-018-0920-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30470227"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30470227"}]}, {"type": "r", "ref": 29, "children": [{"type": "t", "text": "Yuanyuan Ban, Pingqing Tan, Jing Cai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LNCAROD is stabilized by m6A methylation and promotes cancer progression via forming a ternary complex with HSPA1A and YBX1 in head and neck squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/1878-0261.12676"}], "href": "https://doi.org/10.1002/1878-0261.12676"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32216017"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32216017"}]}, {"type": "r", "ref": 30, "children": [{"type": "t", "text": "Ashok Kumar Jayavelu, Tina M Schnöder, Florian Perner, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Splicing factor YBX1 mediates persistence of JAK2-mutated neoplasms."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41586-020-2968-3"}], "href": "https://doi.org/10.1038/s41586-020-2968-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33239784"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33239784"}]}, {"type": "r", "ref": 31, "children": [{"type": "t", "text": "I A Eliseeva, E R Kim, S G Guryanov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Y-box-binding protein 1 (YB-1) and its functions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochemistry (Mosc) (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1134/S0006297911130049"}], "href": "https://doi.org/10.1134/S0006297911130049"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22339596"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22339596"}]}, {"type": "r", "ref": 32, "children": [{"type": "t", "text": "David L Brautigan "}, {"type": "b", "children": [{"type": "t", "text": "Protein Ser/Thr phosphatases--the ugly ducklings of cell signalling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS J (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/j.1742-4658.2012.08609.x"}], "href": "https://doi.org/10.1111/j.1742-4658.2012.08609.x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22519956"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22519956"}]}, {"type": "r", "ref": 33, "children": [{"type": "t", "text": "Annette Lasham, Cristin G Print, Adele G Woolley, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YB-1: oncoprotein, prognostic marker and therapeutic target?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem J (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BJ20121323"}], "href": "https://doi.org/10.1042/BJ20121323"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23216250"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23216250"}]}, {"type": "r", "ref": 34, "children": [{"type": "t", "text": "Dmitry N Lyabin, Irina A Eliseeva, Lev P Ovchinnikov "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 protein: functions and regulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Wiley Interdiscip Rev RNA (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/wrna.1200"}], "href": "https://doi.org/10.1002/wrna.1200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24217978"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24217978"}]}, {"type": "r", "ref": 35, "children": [{"type": "t", "text": "Mohammad Imran Khan, Vaqar Mustafa Adhami, Rahul Kumar Lall, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YB-1 expression promotes epithelial-to-mesenchymal transition in prostate cancer that is inhibited by a small molecule fisetin."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.1790"}], "href": "https://doi.org/10.18632/oncotarget.1790"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24770864"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24770864"}]}, {"type": "r", "ref": 36, "children": [{"type": "t", "text": "Meng Xu, Hua Jin, Cheng-Xiong Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "miR-382 inhibits osteosarcoma metastasis and relapse by targeting Y box-binding protein 1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Ther (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/mt.2014.197"}], "href": "https://doi.org/10.1038/mt.2014.197"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25292190"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25292190"}]}, {"type": "r", "ref": 37, "children": [{"type": "t", "text": "Amal M El-Naggar, Chansey J Veinotte, Hongwei Cheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Translational Activation of HIF1α by YB-1 Promotes Sarcoma Metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ccell.2015.04.003"}], "href": "https://doi.org/10.1016/j.ccell.2015.04.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25965573"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25965573"}]}, {"type": "r", "ref": 38, "children": [{"type": "t", "text": "Michihiko Kuwano, Tomohiro Shibata, Kosuke Watari, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oncogenic Y-box binding protein-1 as an effective therapeutic target in drug-resistant cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cas.14006"}], "href": "https://doi.org/10.1111/cas.14006"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30903644"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30903644"}]}, {"type": "r", "ref": 39, "children": [{"type": "t", "text": "Yin Zhang, Yong-Xin Huang, Dan-Lan Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA DSCAM-AS1 interacts with YBX1 to promote cancer progression by forming a positive feedback loop that activates FOXA1 transcription network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Theranostics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/thno.47830"}], "href": "https://doi.org/10.7150/thno.47830"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32929382"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32929382"}]}, {"type": "r", "ref": 40, "children": [{"type": "t", "text": "Mengdie Feng, Xueqin Xie, Guoqiang Han, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YBX1 is required for maintaining myeloid leukemia cell survival by regulating BCL2 stability in an m6A-dependent manner."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood.2020009676"}], "href": "https://doi.org/10.1182/blood.2020009676"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33763698"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33763698"}]}]}]}
|
| Synonyms | YB-1, NSEP-1, YB1, BP-8, NSEP1, MDR-NF1, DBPB, CSDA2, EFI-A, CSDB |
| Proteins | YBOX1_HUMAN |
| NCBI Gene ID | 4904 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
YBX1 has 18,352 functional associations with biological entities spanning 8 categories (molecular profile, organism, functional term, phrase or reference, chemical, disease, phenotype or trait, structural feature, cell line, cell type or tissue, gene, protein or microRNA) extracted from 134 datasets.
Click the + buttons to view associations for YBX1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Achilles Cell Line Gene Essentiality Profiles | cell lines with fitness changed by YBX1 gene knockdown relative to other cell lines from the Achilles Cell Line Gene Essentiality Profiles dataset. | |
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of YBX1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles | tissues with high or low expression of YBX1 gene relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of YBX1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| Biocarta Pathways | pathways involving YBX1 protein from the Biocarta Pathways dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of YBX1 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of YBX1 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| BioGPS Mouse Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of YBX1 gene relative to other cell types and tissues from the BioGPS Mouse Cell Type and Tissue Gene Expression Profiles dataset. | |
| Carcinogenome Chemical Perturbation Carcinogenicity Signatures | small molecule perturbations changing expression of YBX1 gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of YBX1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with YBX1 protein from the CCLE Cell Line Proteomics dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with YBX1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of YBX1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of YBX1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of YBX1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| CM4AI KOLF21J CRISPRi Gene Perturbation Atlas | gene perturbations changing expression of YBX1 gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores | cellular components containing YBX1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Curated Protein Localization Evidence Scores 2025 | cellular components containing YBX1 protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores | cellular components containing YBX1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 | cellular components containing YBX1 protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores | cellular components co-occuring with YBX1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with YBX1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| CORUM Protein Complexes | protein complexs containing YBX1 protein from the CORUM Protein Complexes dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of YBX1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene Mutation Profiles | cell lines with YBX1 gene mutations from the COSMIC Cell Line Gene Mutation Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with YBX1 gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| CTD Gene-Disease Associations | diseases associated with YBX1 gene/protein from the curated CTD Gene-Disease Associations dataset. | |
| DeepCoverMOA Drug Mechanisms of Action | small molecule perturbations with high or low expression of YBX1 protein relative to other small molecule perturbations from the DeepCoverMOA Drug Mechanisms of Action dataset. | |
| DGIdb Drug Targets 2026 | interacting drugs for YBX1 protein from the DGIdb Drug Targets 2026 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores | diseases co-occuring with YBX1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with YBX1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| DisGeNET Gene-Disease Associations | diseases associated with YBX1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset. | |
| DisGeNET Gene-Phenotype Associations | phenotypes associated with YBX1 gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at YBX1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of YBX1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of YBX1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| ESCAPE Omics Signatures of Genes and Proteins for Stem Cells | PubMedIDs of publications reporting gene signatures containing YBX1 from the ESCAPE Omics Signatures of Genes and Proteins for Stem Cells dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of YBX1 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with YBX1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GeneSigDB Published Gene Signatures | PubMedIDs of publications reporting gene signatures containing YBX1 from the GeneSigDB Published Gene Signatures dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of YBX1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of YBX1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of YBX1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of YBX1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of YBX1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of YBX1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GO Biological Process Annotations 2015 | biological processes involving YBX1 gene from the curated GO Biological Process Annotations 2015 dataset. | |
| GO Biological Process Annotations 2023 | biological processes involving YBX1 gene from the curated GO Biological Process Annotations 2023 dataset. | |
| GO Biological Process Annotations 2025 | biological processes involving YBX1 gene from the curated GO Biological Process Annotations2025 dataset. | |
| GO Cellular Component Annotations 2015 | cellular components containing YBX1 protein from the curated GO Cellular Component Annotations 2015 dataset. | |
| GO Cellular Component Annotations 2023 | cellular components containing YBX1 protein from the curated GO Cellular Component Annotations 2023 dataset. | |
| GO Cellular Component Annotations 2025 | cellular components containing YBX1 protein from the curated GO Cellular Component Annotations 2025 dataset. | |
| GO Molecular Function Annotations 2015 | molecular functions performed by YBX1 gene from the curated GO Molecular Function Annotations 2015 dataset. | |
| GO Molecular Function Annotations 2023 | molecular functions performed by YBX1 gene from the curated GO Molecular Function Annotations 2023 dataset. | |
| GO Molecular Function Annotations 2025 | molecular functions performed by YBX1 gene from the curated GO Molecular Function Annotations 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of YBX1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of YBX1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with YBX1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with YBX1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles | cell lines with high or low expression of YBX1 gene relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of YBX1 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of YBX1 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Protein Expression Profiles | tissues with high or low expression of YBX1 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| HPM Cell Type and Tissue Protein Expression Profiles | cell types and tissues with high or low expression of YBX1 protein relative to other cell types and tissues from the HPM Cell Type and Tissue Protein Expression Profiles dataset. | |
| Hub Proteins Protein-Protein Interactions | interacting hub proteins for YBX1 from the curated Hub Proteins Protein-Protein Interactions dataset. | |
| HuBMAP Azimuth Cell Type Annotations | cell types associated with YBX1 gene from the HuBMAP Azimuth Cell Type Annotations dataset. | |
| HuGE Navigator Gene-Phenotype Associations | phenotypes associated with YBX1 gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset. | |
| InterPro Predicted Protein Domain Annotations | protein domains predicted for YBX1 protein from the InterPro Predicted Protein Domain Annotations dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of YBX1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| JASPAR Predicted Mouse Transcription Factor Targets 2025 | transcription factors regulating expression of YBX1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of YBX1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| KEA Substrates of Kinases | kinases that phosphorylate YBX1 protein from the curated KEA Substrates of Kinases dataset. | |
| Kinase Library Tyrosine Kinome Atlas | kinases that phosphorylate YBX1 protein from the Kinase Library Tyrosine Kinome Atlas dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of YBX1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of YBX1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles | cell lines with YBX1 gene mutations from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Mutation Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of YBX1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of YBX1 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of YBX1 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
| LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of YBX1 gene from the LINCS L1000 CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain YBX1 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MGI Mouse Phenotype Associations 2023 | phenotypes of transgenic mice caused by YBX1 gene mutations from the MGI Mouse Phenotype Associations 2023 dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting YBX1 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of YBX1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MoTrPAC Rat Endurance Exercise Training | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the MoTrPAC Rat Endurance Exercise Training dataset. | |
| MPO Gene-Phenotype Associations | phenotypes of transgenic mice caused by YBX1 gene mutations from the MPO Gene-Phenotype Associations dataset. | |
| MSigDB Cancer Gene Co-expression Modules | co-expressed genes for YBX1 from the MSigDB Cancer Gene Co-expression Modules dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of YBX1 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of YBX1 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| NURSA Protein Complexes | protein complexs containing YBX1 protein recovered by IP-MS from the NURSA Protein Complexes dataset. | |
| Pathway Commons Protein-Protein Interactions | interacting proteins for YBX1 from the Pathway Commons Protein-Protein Interactions dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of YBX1 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations | gene perturbations changing expression of YBX1 gene from the PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| PFOCR Pathway Figure Associations 2023 | pathways involving YBX1 protein from the PFOCR Pathway Figure Associations 2023 dataset. | |
| PFOCR Pathway Figure Associations 2024 | pathways involving YBX1 protein from the Wikipathways PFOCR 2024 dataset. | |
| Phosphosite Textmining Biological Term Annotations | biological terms co-occuring with YBX1 protein in abstracts of publications describing phosphosites from the Phosphosite Textmining Biological Term Annotations dataset. | |
| PhosphoSitePlus Phosphosite-Disease Associations | diseases associated with YBX1 protein from the curated PhosphoSitePlus Phosphosite-Disease Associations dataset. | |
| PhosphoSitePlus Substrates of Kinases | kinases that phosphorylate YBX1 protein from the curated PhosphoSitePlus Substrates of Kinases dataset. | |
| PID Pathways | pathways involving YBX1 protein from the PID Pathways dataset. | |
| ProteomicsDB Cell Type and Tissue Protein Expression Profiles | cell types and tissues with high or low expression of YBX1 protein relative to other cell types and tissues from the ProteomicsDB Cell Type and Tissue Protein Expression Profiles dataset. | |
| Reactome Pathways 2014 | pathways involving YBX1 protein from the Reactome Pathways dataset. | |
| Reactome Pathways 2024 | pathways involving YBX1 protein from the Reactome Pathways 2024 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of YBX1 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of YBX1 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of YBX1 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of YBX1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of YBX1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at YBX1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of YBX1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of YBX1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of YBX1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| Sanger Dependency Map Cancer Cell Line Proteomics | cell lines associated with YBX1 protein from the Sanger Dependency Map Cancer Cell Line Proteomics dataset. | |
| Sci-Plex Drug Perturbation Signatures | drug perturbations changing expression of YBX1 gene from the Sci-Plex Drug Perturbation Signatures dataset. | |
| SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Drugs | drug perturbations changing phosphorylation of YBX1 protein from the SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Drugs dataset. | |
| SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Protein Ligands | ligand (protein) perturbations changing phosphorylation of YBX1 protein from the SILAC Phosphoproteomics Signatures of Differentially Phosphorylated Proteins for Protein Ligands dataset. | |
| SynGO Synaptic Gene Annotations | synaptic terms associated with YBX1 gene from the SynGO Synaptic Gene Annotations dataset. | |
| Tahoe Therapeutics Tahoe 100M Perturbation Atlas | drug perturbations changing expression of YBX1 gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset. | |
| TargetScan Predicted Conserved microRNA Targets | microRNAs regulating expression of YBX1 gene predicted using conserved miRNA seed sequences from the TargetScan Predicted Conserved microRNA Targets dataset. | |
| TargetScan Predicted Nonconserved microRNA Targets | microRNAs regulating expression of YBX1 gene predicted using nonconserved miRNA seed sequences from the TargetScan Predicted Nonconserved microRNA Targets dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of YBX1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores | tissues with high expression of YBX1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of YBX1 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores | tissues with high expression of YBX1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of YBX1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores | tissues co-occuring with YBX1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with YBX1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |
| WikiPathways Pathways 2014 | pathways involving YBX1 protein from the Wikipathways Pathways 2014 dataset. | |
| WikiPathways Pathways 2024 | pathways involving YBX1 protein from the WikiPathways Pathways 2024 dataset. | |