(R)-Verapamil (hydrochloride)_NCI-H2122 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description (R)-Verapamil (hydrochloride) perturbation in NCI-H2122 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the (R)-Verapamil (hydrochloride)_NCI-H2122 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PDE4D phosphodiesterase 4D, cAMP-specific 0.200415
MYO1E myosin IE 0.13848
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.103889
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.0698447
SAMD4A sterile alpha motif domain containing 4A 0.0665466
FNDC3A fibronectin type III domain containing 3A 0.061086
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0585277
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0582867
ELL2 elongation factor, RNA polymerase II, 2 0.0581292
ERRFI1 ERBB receptor feedback inhibitor 1 0.0519658
FZR1 fizzy/cell division cycle 20 related 1 (Drosophila) 0.0510035
MAST4 microtubule associated serine/threonine kinase family member 4 0.0506936
HS6ST3 heparan sulfate 6-O-sulfotransferase 3 0.0465862
ELOF1 elongation factor 1 homolog (S. cerevisiae) 0.0464806
FN1 fibronectin 1 0.0460487
ACTN4 actinin, alpha 4 0.0436733
PRELID2 PRELI domain containing 2 0.0432797
MCL1 myeloid cell leukemia 1 0.0423784
CXCL8 chemokine (C-X-C motif) ligand 8 0.0423009
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0422541
KDM2A lysine (K)-specific demethylase 2A 0.0415118
PPARD peroxisome proliferator-activated receptor delta 0.0409944
ANXA1 annexin A1 0.0398023
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0397174
ADARB1 adenosine deaminase, RNA-specific, B1 0.0387567
NDRG1 N-myc downstream regulated 1 0.038531
PM20D1 peptidase M20 domain containing 1 0.0381958
VCL vinculin 0.037668
DUSP10 dual specificity phosphatase 10 0.0376065
STEAP4 STEAP family member 4 0.0369948
N4BP2L2 NEDD4 binding protein 2-like 2 0.0368991
NABP1 nucleic acid binding protein 1 0.0368099
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.036322
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.0355461
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 0.0353803
CATSPERB catsper channel auxiliary subunit beta 0.0352191
PTPRM protein tyrosine phosphatase, receptor type, M 0.0349862
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.034892
ATXN1 ataxin 1 0.0348162
NPAS2 neuronal PAS domain protein 2 0.0342024
TRAPPC9 trafficking protein particle complex 9 0.0339036
RAB11FIP1 RAB11 family interacting protein 1 (class I) 0.0338879
NECTIN4 nectin cell adhesion molecule 4 0.0337005
PRKCSH protein kinase C substrate 80K-H 0.0327643
AKAP13 A kinase (PRKA) anchor protein 13 0.0327285
KRT17 keratin 17, type I 0.032718
SPDYA speedy/RINGO cell cycle regulator family member A 0.0326007
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) 0.0324261
CDK12 cyclin-dependent kinase 12 0.0323801
MYO1D myosin ID 0.0320667
NBEAL1 neurobeachin-like 1 0.031995
GTF2IRD1 GTF2I repeat domain containing 1 0.0317857
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0310999
EXT1 exostosin glycosyltransferase 1 0.0309918
ARID5B AT rich interactive domain 5B (MRF1-like) 0.0308867
BRAF B-Raf proto-oncogene, serine/threonine kinase 0.0307636
STXBP5L syntaxin binding protein 5-like 0.0305501
DNAJB6 DnaJ (Hsp40) homolog, subfamily B, member 6 0.0300471
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0298491
BCAS3 breast carcinoma amplified sequence 3 0.0293293
NCEH1 neutral cholesterol ester hydrolase 1 0.0293032
ITGB4 integrin, beta 4 0.0291366
OXSR1 oxidative stress responsive 1 0.0289458
LDLR low density lipoprotein receptor 0.0288684
OPTN optineurin 0.0286959
BRIP1 BRCA1 interacting protein C-terminal helicase 1 0.0286911
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.0285113
CEMIP2 cell migration inducing hyaluronidase 2 0.0283313
ATP9A ATPase, class II, type 9A 0.0281337
NAV1 neuron navigator 1 0.0280915
KDM7A lysine (K)-specific demethylase 7A 0.0279319
CDH13 cadherin 13 0.0278641
ITPRID2 ITPR interacting domain containing 2 0.0275777
SCAF11 SR-related CTD-associated factor 11 0.0273494
CHST15 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 0.0273304
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0270913
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0270331
DENND2C DENN/MADD domain containing 2C 0.0267674
SOX4 SRY (sex determining region Y)-box 4 0.0267108
ATP11B ATPase, class VI, type 11B 0.0266426
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0266069
HECTD4 HECT domain containing E3 ubiquitin protein ligase 4 0.0264879
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0263206
PPP4R3B protein phosphatase 4 regulatory subunit 3B 0.0263057
DUSP4 dual specificity phosphatase 4 0.0262742
CEP95 centrosomal protein 95kDa 0.0262435
USP53 ubiquitin specific peptidase 53 0.0262359
RC3H1 ring finger and CCCH-type domains 1 0.0261995
HDAC8 histone deacetylase 8 0.0259098
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0258852
BMAL2 basic helix-loop-helix ARNT like 2 0.0258143
ELF3 E74-like factor 3 (ets domain transcription factor, epithelial-specific ) 0.0255116
DCAF6 DDB1 and CUL4 associated factor 6 0.0251635
OSBPL10 oxysterol binding protein-like 10 0.0249125
PDLIM5 PDZ and LIM domain 5 0.0245913
AP1G1 adaptor-related protein complex 1, gamma 1 subunit 0.024198
AVL9 AVL9 homolog (S. cerevisiase) 0.0240793
VMP1 vacuole membrane protein 1 0.0239368
PRDM1 PR domain containing 1, with ZNF domain 0.0237954
NKD1 naked cuticle homolog 1 (Drosophila) 0.0237813

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.138881
FTL ferritin, light polypeptide -0.129958
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.1295
PTMA prothymosin, alpha -0.0943887
NF1 neurofibromin 1 -0.0837121
TMSB10 thymosin beta 10 -0.0812699
MT2A metallothionein 2A -0.0764505
JMJD1C jumonji domain containing 1C -0.0733372
NAP1L1 nucleosome assembly protein 1-like 1 -0.073196
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0731804
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0708637
FNDC3B fibronectin type III domain containing 3B -0.0695852
TPT1 tumor protein, translationally-controlled 1 -0.0592081
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0578163
LMO7 LIM domain 7 -0.0576501
RPL11 ribosomal protein L11 -0.0531569
TXNRD1 thioredoxin reductase 1 -0.0528996
ACTG1 actin gamma 1 -0.0524555
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 -0.0511381
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0502275
RPL35A ribosomal protein L35a -0.0482807
SPAG9 sperm associated antigen 9 -0.0451939
LOXL2 lysyl oxidase-like 2 -0.0451422
RPLP1 ribosomal protein, large, P1 -0.0448351
RPS6 ribosomal protein S6 -0.0439834
SRP54 signal recognition particle 54kDa -0.043677
PARD3 par-3 family cell polarity regulator -0.0436141
CANX calnexin -0.0434223
LOC112694756 uncharaterized LOC112694756 -0.0424773
ZNF638 zinc finger protein 638 -0.0414119
GRB10 growth factor receptor-bound protein 10 -0.0409329
ZFC3H1 zinc finger, C3H1-type containing -0.0405047
RPS16 ribosomal protein S16 -0.0404478
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) -0.0404206
MAML3 mastermind-like 3 (Drosophila) -0.0401046
USP3 ubiquitin specific peptidase 3 -0.0398343
ATOSA atos homolog A -0.0388169
B2M beta-2-microglobulin -0.0385783
ELF2 E74-like factor 2 (ets domain transcription factor) -0.0370907
FBF1 Fas (TNFRSF6) binding factor 1 -0.0370889
FNIP1 folliculin interacting protein 1 -0.0368815
UBE2H ubiquitin-conjugating enzyme E2H -0.0365519
STAT1 signal transducer and activator of transcription 1, 91kDa -0.0364908
KATNBL1 katanin p80 subunit B-like 1 -0.0364884
PRKCA protein kinase C, alpha -0.0355642
OGA O-GlcNAcase -0.0351884
DLG1 discs, large homolog 1 (Drosophila) -0.0345645
RIGI RNA sensor RIG-I -0.0332742
ITCH itchy E3 ubiquitin protein ligase -0.0327867
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0324701
AK1 adenylate kinase 1 -0.031676
RPL19 ribosomal protein L19 -0.0314167
KPNB1 karyopherin (importin) beta 1 -0.0310977
SQSTM1 sequestosome 1 -0.0310577
ANKIB1 ankyrin repeat and IBR domain containing 1 -0.0306292
RPL37A ribosomal protein L37a -0.0300506
ZEB1 zinc finger E-box binding homeobox 1 -0.0298757
ZNF207 zinc finger protein 207 -0.029763
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0296043
ESYT2 extended synaptotagmin-like protein 2 -0.029472
KANSL1 KAT8 regulatory NSL complex subunit 1 -0.0286923
RPS14 ribosomal protein S14 -0.0285161
RAB1A RAB1A, member RAS oncogene family -0.0277599
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0273609
PDIA3 protein disulfide isomerase family A, member 3 -0.0272957
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 -0.0270345
RPS19 ribosomal protein S19 -0.0269779
ENO1 enolase 1, (alpha) -0.0268672
PARP14 poly (ADP-ribose) polymerase family, member 14 -0.0268263
SERPINA1 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 -0.0264261
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.0263954
VDAC1 voltage-dependent anion channel 1 -0.0263697
ASPH aspartate beta-hydroxylase -0.0263051
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa -0.0262218
BRWD1 bromodomain and WD repeat domain containing 1 -0.0260776
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0258789
NCOA2 nuclear receptor coactivator 2 -0.0258682
SLC12A6 solute carrier family 12 (potassium/chloride transporter), member 6 -0.0257764
RPS21 ribosomal protein S21 -0.025704
RPLP2 ribosomal protein, large, P2 -0.0254567
FGD6 FYVE, RhoGEF and PH domain containing 6 -0.025433
CD63 CD63 molecule -0.0252832
FMNL2 formin-like 2 -0.0251708
UBR2 ubiquitin protein ligase E3 component n-recognin 2 -0.025046
SLC38A1 solute carrier family 38, member 1 -0.0249672
KHDC4 KH domain containing 4, pre-mRNA splicing factor -0.0248986
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.024831
CLMP CXADR-like membrane protein -0.0247886
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.0247035
CHD1 chromodomain helicase DNA binding protein 1 -0.0246253
TRIP12 thyroid hormone receptor interactor 12 -0.0244751
SETD5 SET domain containing 5 -0.0244624
APP amyloid beta (A4) precursor protein -0.0244597
RNF145 ring finger protein 145 -0.024373
NCOA1 nuclear receptor coactivator 1 -0.0243121
KTN1 kinectin 1 (kinesin receptor) -0.0242367
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -0.0241535
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 -0.0241471
GOLGA4 golgin A4 -0.0238906
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0237654