(R)-Verapamil (hydrochloride)_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description (R)-Verapamil (hydrochloride) perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the (R)-Verapamil (hydrochloride)_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
DST dystonin 0.130503
KYNU kynureninase 0.0903728
PSD3 pleckstrin and Sec7 domain containing 3 0.084892
PM20D1 peptidase M20 domain containing 1 0.0814648
COL8A1 collagen, type VIII, alpha 1 0.0805659
PDE10A phosphodiesterase 10A 0.0722434
PDE4D phosphodiesterase 4D, cAMP-specific 0.0640079
PRKN parkin RBR E3 ubiquitin protein ligase 0.0639917
ZSWIM6 zinc finger, SWIM-type containing 6 0.0638372
CTIF CBP80/20-dependent translation initiation factor 0.0621154
GRAMD1B GRAM domain containing 1B 0.0616876
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0594377
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0581672
RPS4X ribosomal protein S4, X-linked 0.0577861
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.055606
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0546873
PDLIM5 PDZ and LIM domain 5 0.0544603
SMOC1 SPARC related modular calcium binding 1 0.0523338
INTS6 integrator complex subunit 6 0.048433
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 0.0461323
SMAD2 SMAD family member 2 0.0444558
VCL vinculin 0.0433635
TGFBR1 transforming growth factor, beta receptor 1 0.0423524
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0414521
MCL1 myeloid cell leukemia 1 0.0410697
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0402577
RPL23 ribosomal protein L23 0.0392302
TRIO trio Rho guanine nucleotide exchange factor 0.0365359
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.0348821
RPS12 ribosomal protein S12 0.0347884
FLNB filamin B, beta 0.0347078
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 0.0342554
PCBP2 poly(rC) binding protein 2 0.0341647
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0340381
DOCK5 dedicator of cytokinesis 5 0.031362
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0313272
ASPH aspartate beta-hydroxylase 0.0312872
SLC38A2 solute carrier family 38, member 2 0.0310962
PRRC2C proline-rich coiled-coil 2C 0.0309987
RPS17 ribosomal protein S17 0.0308378
ATXN1 ataxin 1 0.0303143
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.0299074
DOCK4 dedicator of cytokinesis 4 0.0296667
BMP6 bone morphogenetic protein 6 0.0291153
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0290632
MCTP1 multiple C2 domains, transmembrane 1 0.0274932
EPHA4 EPH receptor A4 0.0274901
GPC6 glypican 6 0.0274264
NT5C2 5'-nucleotidase, cytosolic II 0.0273463
SLF1 SMC5-SMC6 complex localization factor 1 0.0272024
CHD1 chromodomain helicase DNA binding protein 1 0.0268719
USP34 ubiquitin specific peptidase 34 0.0261841
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0261465
AKAP13 A kinase (PRKA) anchor protein 13 0.0251963
PRELID2 PRELI domain containing 2 0.0249985
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0247542
MORF4L2 mortality factor 4 like 2 0.0246038
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) 0.0243124
BASP1 brain abundant, membrane attached signal protein 1 0.0242696
MAML3 mastermind-like 3 (Drosophila) 0.0241812
CREB3L2 cAMP responsive element binding protein 3-like 2 0.0239573
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.023669
PTPRM protein tyrosine phosphatase, receptor type, M 0.0234624
SAMD4A sterile alpha motif domain containing 4A 0.0221446
NRXN3 neurexin 3 0.0220491
ANTXR1 anthrax toxin receptor 1 0.0217799
ADARB1 adenosine deaminase, RNA-specific, B1 0.0215089
EXT1 exostosin glycosyltransferase 1 0.0213943
PDE7B phosphodiesterase 7B 0.0213672
FMNL2 formin-like 2 0.0211606
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.020512
HSPA8 heat shock 70kDa protein 8 0.0204837
AADAC arylacetamide deacetylase 0.0204105
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.020215
FLRT2 fibronectin leucine rich transmembrane protein 2 0.0201771
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0198826
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0196812
SFPQ splicing factor proline/glutamine-rich 0.019639
FER fer (fps/fes related) tyrosine kinase 0.0194561
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0193611
CARD16 caspase recruitment domain family, member 16 0.0189733
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0187901
NCAPG2 non-SMC condensin II complex, subunit G2 0.0186908
RAD51B RAD51 paralog B 0.0186303
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0184328
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K 0.0181479
PLCB4 phospholipase C, beta 4 0.018028
RPL17-C18ORF32 RPL17-C18orf32 readthrough 0.0180164
MARCHF1 membrane associated ring-CH-type finger 1 0.0178982
AGTPBP1 ATP/GTP binding protein 1 0.0178631
ATXN7 ataxin 7 0.0178573
ATP5F1E ATP synthase F1 subunit epsilon 0.0178228
GLS2 glutaminase 2 (liver, mitochondrial) 0.0178069
CEP72 centrosomal protein 72kDa 0.0177311
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0177296
RCOR1 REST corepressor 1 0.0176972
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0176907
CREBBP CREB binding protein 0.0176898
CTBP2 C-terminal binding protein 2 0.0175826
UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 0.017535

decreased expression

Symbol Name Standardized Value
FN1 fibronectin 1 -0.463945
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.207796
NAMPT nicotinamide phosphoribosyltransferase -0.155241
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.1447
VIM vimentin -0.123221
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0919181
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0887913
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0830232
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0697558
CANX calnexin -0.0680589
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0672995
PTMA prothymosin, alpha -0.0637515
PGK1 phosphoglycerate kinase 1 -0.0589368
STC1 stanniocalcin 1 -0.0571485
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0569008
PDIA3 protein disulfide isomerase family A, member 3 -0.0526189
WARS1 tryptophanyl-tRNA synthetase 1 -0.0499755
CTSL cathepsin L -0.0476601
PCBP3 poly(rC) binding protein 3 -0.0473771
TFPI2 tissue factor pathway inhibitor 2 -0.0460558
TGFBI transforming growth factor, beta-induced, 68kDa -0.0460185
SOX4 SRY (sex determining region Y)-box 4 -0.0454835
FTH1 ferritin, heavy polypeptide 1 -0.0454695
S100A6 S100 calcium binding protein A6 -0.0451728
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0449792
COL5A2 collagen, type V, alpha 2 -0.043749
NALF1 NALCN channel auxiliary factor 1 -0.0435888
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0435775
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0421857
CDH13 cadherin 13 -0.0413184
BZW1 basic leucine zipper and W2 domains 1 -0.0403611
TENM3 teneurin transmembrane protein 3 -0.0397067
OSMR oncostatin M receptor -0.0393445
HLA-B major histocompatibility complex, class I, B -0.0385374
FTL ferritin, light polypeptide -0.0384435
SOD2 superoxide dismutase 2, mitochondrial -0.0382921
LOC112694756 uncharaterized LOC112694756 -0.038032
TMX4 thioredoxin-related transmembrane protein 4 -0.0366988
KPNB1 karyopherin (importin) beta 1 -0.0365885
LMAN1 lectin, mannose-binding, 1 -0.035904
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D -0.0358891
GNAS GNAS complex locus -0.0352102
VDAC1 voltage-dependent anion channel 1 -0.0350644
ZMYND8 zinc finger, MYND-type containing 8 -0.0329749
TPM4 tropomyosin 4 -0.0329007
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0322317
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 -0.0320273
PYGL phosphorylase, glycogen, liver -0.0315843
IER3 immediate early response 3 -0.0314654
KDM3A lysine (K)-specific demethylase 3A -0.0308941
ENO1 enolase 1, (alpha) -0.030627
DGKD diacylglycerol kinase, delta 130kDa -0.0305903
RPLP0 ribosomal protein, large, P0 -0.0301785
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0300301
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0298611
HSPD1 heat shock 60kDa protein 1 (chaperonin) -0.0294074
TPT1 tumor protein, translationally-controlled 1 -0.0291558
PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 -0.0283903
DDX60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 -0.0282549
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0276959
TMSB4X thymosin beta 4, X-linked -0.0276911
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.0276868
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0275147
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0274664
OGA O-GlcNAcase -0.0272387
RIGI RNA sensor RIG-I -0.0271165
PTGR1 prostaglandin reductase 1 -0.0268742
BTG1 B-cell translocation gene 1, anti-proliferative -0.026755
BMERB1 bMERB domain containing 1 -0.0265646
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0261864
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0260243
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0259429
EIF1 eukaryotic translation initiation factor 1 -0.025611
FOXC1 forkhead box C1 -0.0255505
RPLP1 ribosomal protein, large, P1 -0.0254445
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0251
BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 -0.0248789
SLC16A6 solute carrier family 16, member 6 -0.0248553
SMYD3 SET and MYND domain containing 3 -0.0246649
CCDC68 coiled-coil domain containing 68 -0.0245596
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.0245354
AFF4 AF4/FMR2 family, member 4 -0.0243206
NCKAP5 NCK-associated protein 5 -0.0241457
RHOB ras homolog family member B -0.0239498
UNC5D unc-5 homolog D (C. elegans) -0.0237993
HILPDA hypoxia inducible lipid droplet-associated -0.0237719
KDM5B lysine (K)-specific demethylase 5B -0.0237007
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0236523
ANXA2 annexin A2 -0.0235333
UBC ubiquitin C -0.0233319
NPEPPS aminopeptidase puromycin sensitive -0.0231194
FAM13A family with sequence similarity 13, member A -0.0231029
PNRC1 proline-rich nuclear receptor coactivator 1 -0.0230677
RPL39 ribosomal protein L39 -0.0229712
SPAG9 sperm associated antigen 9 -0.0228746
CTNND2 catenin (cadherin-associated protein), delta 2 -0.0228376
TBXT T-box transcription factor T -0.0228171
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0226619
OASL 2'-5'-oligoadenylate synthetase-like -0.0225254
SCCPDH saccharopine dehydrogenase (putative) -0.0224829