| Dataset | CCLE Cell Line Gene CNV Profiles |
| Category | genomics |
| Type | cell line |
| Similar Terms | |
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208 genes with high or low copy number in 42MGBA relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| CCSER1 | coiled-coil serine-rich protein 1 | 2.59999 |
| ATP2C1 | ATPase, Ca++ transporting, type 2C, member 1 | 1.96412 |
| NEGR1 | neuronal growth regulator 1 | 1.85455 |
| LINC00515 | long intergenic non-protein coding RNA 515 | 1.62702 |
| MIR155 | microRNA 155 | 1.62702 |
| MIR155HG | MIR155 host gene | 1.62698 |
| GABPA | GA binding protein transcription factor, alpha subunit 60kDa | 1.6267 |
| JAM2 | junctional adhesion molecule 2 | 1.6267 |
| ATP5J | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 | 1.6267 |
| LINC00158 | long intergenic non-protein coding RNA 158 | 1.62542 |
| LOC339622 | uncharacterized LOC339622 | 1.59478 |
| APP | amyloid beta (A4) precursor protein | 1.59376 |
| ADAMTS1 | ADAM metallopeptidase with thrombospondin type 1 motif, 1 | 1.56652 |
| LINC00113 | long intergenic non-protein coding RNA 113 | 1.56627 |
| ADAMTS5 | ADAM metallopeptidase with thrombospondin type 1 motif, 5 | 1.56592 |
| MIR4759 | microRNA 4759 | 1.56592 |
| LINC00314 | long intergenic non-protein coding RNA 314 | 1.54762 |
| MRPL39 | mitochondrial ribosomal protein L39 | 1.54015 |
| CYYR1 | cysteine/tyrosine-rich 1 | 1.53295 |
| D21S2088E | D21S2088E | 1.51401 |
| LINC00317 | long intergenic non-protein coding RNA 317 | 1.5089 |
| LINC00320 | long intergenic non-protein coding RNA 320 | 1.50291 |
| LINC00308 | long intergenic non-protein coding RNA 308 | 1.50206 |
| TMPRSS15 | transmembrane protease, serine 15 | 1.4572 |
| CHODL-AS1 | CHODL antisense RNA 1 | 1.44433 |
| OR13C5 | olfactory receptor, family 13, subfamily C, member 5 | 1.44422 |
| C21ORF91 | chromosome 21 open reading frame 91 | 1.42963 |
| C21ORF91-OT1 | C21orf91 overlapping transcript 1 | 1.4213 |
| MIRLET7C | microRNA let-7c | 1.4129 |
| MIR99A | microRNA 99a | 1.4129 |
| CHODL | chondrolectin | 1.41265 |
| ASB17 | ankyrin repeat and SOCS box containing 17 | 1.4125 |
| IFI44 | interferon-induced protein 44 | 1.40689 |
| IFI44L | interferon-induced protein 44-like | 1.40668 |
| PTGFR | prostaglandin F receptor (FP) | 1.40644 |
| HIAT1 | hippocampus abundant transcript 1 | 1.40113 |
| SLC35A3 | solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 | 1.40094 |
| ERBB3 | erb-b2 receptor tyrosine kinase 3 | 1.40092 |
| SASS6 | spindle assembly 6 homolog (C. elegans) | 1.40066 |
| OR13C2 | olfactory receptor, family 13, subfamily C, member 2 | 1.40019 |
| AGL | amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase | 1.39976 |
| LRRC39 | leucine rich repeat containing 39 | 1.39849 |
| RNU5E-1 | RNA, U5E small nuclear 1 | 1.39761 |
| RNU5D-1 | RNA, U5D small nuclear 1 | 1.39761 |
| SLC44A5 | solute carrier family 44, member 5 | 1.39511 |
| MSH4 | mutS homolog 4 | 1.3923 |
| SNORD45A | small nucleolar RNA, C/D box 45A | 1.39211 |
| SNORD45C | small nucleolar RNA, C/D box 45C | 1.39211 |
| SNORD45B | small nucleolar RNA, C/D box 45B | 1.39203 |
| ACADM | acyl-CoA dehydrogenase, C-4 to C-12 straight chain | 1.39203 |
| RABGGTB | Rab geranylgeranyltransferase, beta subunit | 1.39203 |
| LINC01549 | long intergenic non-protein coding RNA 1549 | 1.39018 |
| DBT | dihydrolipoamide branched chain transacylase E2 | 1.38177 |
| TRMT13 | tRNA methyltransferase 13 homolog (S. cerevisiae) | 1.38147 |
| DNAJB4 | DnaJ (Hsp40) homolog, subfamily B, member 4 | 1.37725 |
| GIPC2 | GIPC PDZ domain containing family, member 2 | 1.37714 |
| MIR125B2 | microRNA 125b-2 | 1.37656 |
| PIGV | phosphatidylinositol glycan anchor biosynthesis, class V | 1.37311 |
| ZDHHC18 | zinc finger, DHHC-type containing 18 | 1.37311 |
| CXADR | coxsackie virus and adenovirus receptor | 1.37201 |
| SFN | stratifin | 1.37122 |
| BTG3 | BTG family, member 3 | 1.36871 |
| ZZZ3 | zinc finger, ZZ-type containing 3 | 1.36658 |
| ADGRL4 | adhesion G protein-coupled receptor L4 | 1.36435 |
| LHX8 | LIM homeobox 8 | 1.36341 |
| MIR553 | microRNA 553 | 1.36317 |
| RTCA | RNA 3'-terminal phosphate cyclase | 1.36303 |
| FPGT | fucose-1-phosphate guanylyltransferase | 1.36023 |
| ARID1A | AT rich interactive domain 1A (SWI-like) | 1.35988 |
| ERICH3 | glutamate-rich 3 | 1.3597 |
| MIR5698 | microRNA 5698 | 1.35704 |
| PALMD | palmdelphin | 1.35697 |
| FAM73A | family with sequence similarity 73, member A | 1.3561 |
| USP33 | ubiquitin specific peptidase 33 | 1.35584 |
| SLC9A1 | solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 | 1.35449 |
| ST6GALNAC3 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 | 1.35436 |
| GPATCH3 | G patch domain containing 3 | 1.35352 |
| GPN2 | GPN-loop GTPase 2 | 1.35352 |
| POTEG | POTE ankyrin domain family, member G | 1.35148 |
| PIGK | phosphatidylinositol glycan anchor biosynthesis, class K | 1.35022 |
| RPA2 | replication protein A2, 32kDa | 1.34869 |
| FUBP1 | far upstream element (FUSE) binding protein 1 | 1.34121 |
| NEXN | nexilin (F actin binding protein) | 1.34109 |
| EXTL2 | exostosin-like glycosyltransferase 2 | 1.3388 |
| NR0B2 | nuclear receptor subfamily 0, group B, member 2 | 1.33743 |
| LPPR4 | lipid phosphate phosphatase-related protein type 4 | 1.33648 |
| MIR1976 | microRNA 1976 | 1.33322 |
| NCAM2 | neural cell adhesion molecule 2 | 1.33237 |
| ST6GALNAC5 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 | 1.33175 |
| LPPR5 | lipid phosphate phosphatase-related protein type 5 | 1.3316 |
| FAM76A | family with sequence similarity 76, member A | 1.33146 |
| STX12 | syntaxin 12 | 1.33121 |
| PPP1R8 | protein phosphatase 1, regulatory subunit 8 | 1.33121 |
| SCARNA1 | small Cajal body-specific RNA 1 | 1.33121 |
| RPS6KA1 | ribosomal protein S6 kinase, 90kDa, polypeptide 1 | 1.33072 |
| IFI6 | interferon, alpha-inducible protein 6 | 1.32974 |
| GPR88 | G protein-coupled receptor 88 | 1.3297 |
| CDC14A | cell division cycle 14A | 1.32861 |
| Symbol | Name | Standardized Value |
|---|---|---|
| SRBD1 | S1 RNA binding domain 1 | -3.21049 |
| MGST1 | microsomal glutathione S-transferase 1 | -3.21049 |
| SYPL1 | synaptophysin-like 1 | -3.20989 |
| PSIP1 | PC4 and SFRS1 interacting protein 1 | -2.58517 |
| DDR2 | discoidin domain receptor tyrosine kinase 2 | -2.3514 |
| CCDC171 | coiled-coil domain containing 171 | -2.3485 |
| LOC646813 | DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene | -2.1875 |
| BNC2 | basonuclin 2 | -2.17614 |
| C6ORF52 | chromosome 6 open reading frame 52 | -2.12417 |
| VPS53 | vacuolar protein sorting 53 homolog (S. cerevisiae) | -2.11897 |
| ULK4 | unc-51 like kinase 4 | -2.09389 |
| RET | ret proto-oncogene | -1.9973 |
| EPHX2 | epoxide hydrolase 2, cytoplasmic | -1.95159 |
| CNTLN | centlein, centrosomal protein | -1.90349 |
| KGFLP2 | keratinocyte growth factor-like protein 2 | -1.89779 |
| SH3GL2 | SH3-domain GRB2-like 2 | -1.80239 |
| FAM134B | family with sequence similarity 134, member B | -1.78229 |
| LOC441601 | septin 7 pseudogene | -1.75826 |
| FYCO1 | FYVE and coiled-coil domain containing 1 | -1.75483 |
| CPNE4 | copine IV | -1.72276 |
| CCL3L3 | chemokine (C-C motif) ligand 3-like 3 | -1.66171 |
| CCL3L1 | chemokine (C-C motif) ligand 3-like 1 | -1.66171 |
| TUSC3 | tumor suppressor candidate 3 | -1.59209 |
| TSSC1 | tumor suppressing subtransferable candidate 1 | -1.56127 |
| FOXN1 | forkhead box N1 | -1.48744 |
| SPAG5-AS1 | SPAG5 antisense RNA 1 | -1.48742 |
| SPAG5 | sperm associated antigen 5 | -1.48742 |
| UNC119 | unc-119 homolog (C. elegans) | -1.48742 |
| PIGS | phosphatidylinositol glycan anchor biosynthesis, class S | -1.48742 |
| ALDOC | aldolase C, fructose-bisphosphate | -1.48742 |
| SGK494 | uncharacterized serine/threonine-protein kinase SgK494 | -1.48742 |
| SLC13A2 | solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 | -1.48685 |
| TMEM236 | transmembrane protein 236 | -1.48625 |
| PPY2P | pancreatic polypeptide 2, pseudogene | -1.48372 |
| PYY2 | peptide YY, 2 (pseudogene) | -1.48361 |
| MIR511 | microRNA 511 | -1.48074 |
| PDPR | pyruvate dehydrogenase phosphatase regulatory subunit | -1.46607 |
| TRAF4 | TNF receptor-associated factor 4 | -1.46274 |
| SNORD42A | small nucleolar RNA, C/D box 42A | -1.46271 |
| TLCD1 | TLC domain containing 1 | -1.46271 |
| SNORD4B | small nucleolar RNA, C/D box 4B | -1.46271 |
| NEK8 | NIMA-related kinase 8 | -1.46271 |
| SLC46A1 | solute carrier family 46 (folate transporter), member 1 | -1.46258 |
| TMEM199 | transmembrane protein 199 | -1.45977 |
| VTN | vitronectin | -1.45977 |
| SEBOX | SEBOX homeobox | -1.45977 |
| MIR4723 | microRNA 4723 | -1.45977 |
| SARM1 | sterile alpha and TIR motif containing 1 | -1.45965 |
| TNFAIP1 | tumor necrosis factor, alpha-induced protein 1 (endothelial) | -1.45961 |
| IFT20 | intraflagellar transport 20 | -1.45961 |
| TMEM97 | transmembrane protein 97 | -1.45961 |
| KRT18P55 | keratin 18 pseudogene 55 | -1.45953 |
| NLK | nemo-like kinase | -1.45928 |
| MRC1 | mannose receptor, C type 1 | -1.4467 |
| GRIA2 | glutamate receptor, ionotropic, AMPA 2 | -1.44655 |
| CREB5 | cAMP responsive element binding protein 5 | -1.44127 |
| MIR144 | microRNA 144 | -1.44018 |
| ERAL1 | Era-like 12S mitochondrial rRNA chaperone 1 | -1.44018 |
| MIR451A | microRNA 451a | -1.44018 |
| MIR4732 | microRNA 4732 | -1.44018 |
| MIR451B | microRNA 451b | -1.44018 |
| KIAA0100 | KIAA0100 | -1.43994 |
| SDF2 | stromal cell-derived factor 2 | -1.43976 |
| PROCA1 | protein interacting with cyclin A1 | -1.43974 |
| NARR | nine-amino acid residue-repeats | -1.43974 |
| RAB34 | RAB34, member RAS oncogene family | -1.43974 |
| SNORD42B | small nucleolar RNA, C/D box 42B | -1.43974 |
| SUPT6H | suppressor of Ty 6 homolog (S. cerevisiae) | -1.43974 |
| RPL23A | ribosomal protein L23a | -1.43974 |
| SNORD4A | small nucleolar RNA, C/D box 4A | -1.43974 |
| POLDIP2 | polymerase (DNA-directed), delta interacting protein 2 | -1.43717 |
| KLRC2 | killer cell lectin-like receptor subfamily C, member 2 | -1.43654 |
| FMN2 | formin 2 | -1.4235 |
| KREMEN1 | kringle containing transmembrane protein 1 | -1.42011 |
| PHF12 | PHD finger protein 12 | -1.4187 |
| DHRS13 | dehydrogenase/reductase (SDR family) member 13 | -1.41864 |
| FLOT2 | flotillin 2 | -1.41864 |
| DPH5 | diphthamide biosynthesis 5 | -1.41654 |
| CRYBA1 | crystallin, beta A1 | -1.39927 |
| TIAF1 | TGFB1-induced anti-apoptotic factor 1 | -1.39914 |
| PIPOX | pipecolic acid oxidase | -1.39821 |
| FAM222B | family with sequence similarity 222, member B | -1.39784 |
| SEZ6 | seizure related 6 homolog (mouse) | -1.37893 |
| NUFIP2 | nuclear fragile X mental retardation protein interacting protein 2 | -1.36144 |
| MYO18A | myosin XVIIIA | -1.36127 |
| CORO6 | coronin 6 | -1.35287 |
| ABHD15 | abhydrolase domain containing 15 | -1.35236 |
| GIT1 | G protein-coupled receptor kinase interacting ArfGAP 1 | -1.35236 |
| TP53I13 | tumor protein p53 inducible protein 13 | -1.35236 |
| PI4KB | phosphatidylinositol 4-kinase, catalytic, beta | -1.34229 |
| ZNF687 | zinc finger protein 687 | -1.34229 |
| MIR554 | microRNA 554 | -1.34193 |
| CGN | cingulin | -1.34193 |
| RFX5 | regulatory factor X, 5 (influences HLA class II expression) | -1.34123 |
| ANKRD13B | ankyrin repeat domain 13B | -1.33489 |
| TUBBP5 | tubulin, beta pseudogene 5 | -1.33412 |
| MIR4523 | microRNA 4523 | -1.33114 |
| TIPE2 | TNF alpha induced protein 8 like 2 | -1.32993 |
| SEMA6C | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C | -1.32993 |
| TNFAIP8L2-SCNM1 | TNFAIP8L2-SCNM1 readthrough | -1.32993 |
| VPS72 | vacuolar protein sorting 72 homolog (S. cerevisiae) | -1.32928 |
| TMOD4 | tropomodulin 4 (muscle) | -1.3288 |
| LYSMD1 | LysM, putative peptidoglycan-binding, domain containing 1 | -1.3288 |
| SCNM1 | sodium channel modifier 1 | -1.3288 |
| PSMD4 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 | -1.32865 |
| PIP5K1A | phosphatidylinositol-4-phosphate 5-kinase, type I, alpha | -1.32841 |
| SELENBP1 | selenium binding protein 1 | -1.32299 |
| POGZ | pogo transposable element with ZNF domain | -1.32266 |
| HIST2H3D | histone cluster 2, H3d | -1.32211 |
| CTSO | cathepsin O | -1.32095 |
