4EGI-1_SK-MEL-2 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description 4EGI-1 perturbation in SK-MEL-2 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the 4EGI-1_SK-MEL-2 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
VIM vimentin 0.165909
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.159383
NRG3 neuregulin 3 0.152061
FMN1 formin 1 0.149827
FNDC3B fibronectin type III domain containing 3B 0.138671
DST dystonin 0.106037
NAV2 neuron navigator 2 0.101852
FN1 fibronectin 1 0.0978562
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0912012
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0870749
SPAG9 sperm associated antigen 9 0.0853028
ICAM1 intercellular adhesion molecule 1 0.0808604
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0802828
LINGO2 leucine rich repeat and Ig domain containing 2 0.0775067
AKAP12 A kinase (PRKA) anchor protein 12 0.0693684
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 0.0684658
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0668363
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0661855
LDHA lactate dehydrogenase A 0.0598821
CXCL8 chemokine (C-X-C motif) ligand 8 0.0574286
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0563073
PGK1 phosphoglycerate kinase 1 0.0556131
CD44 CD44 molecule (Indian blood group) 0.0540473
SOD2 superoxide dismutase 2, mitochondrial 0.052573
TRIO trio Rho guanine nucleotide exchange factor 0.0524124
GOLGA4 golgin A4 0.0498728
MAP4 microtubule-associated protein 4 0.0497924
CENPF centromere protein F, 350/400kDa 0.049182
AKT3 v-akt murine thymoma viral oncogene homolog 3 0.0487114
CANX calnexin 0.0486056
LAMP2 lysosomal-associated membrane protein 2 0.0476033
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0475527
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0466907
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0463027
SH3KBP1 SH3-domain kinase binding protein 1 0.0456425
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0451156
ANGPTL4 angiopoietin-like 4 0.044597
GOLGB1 golgin B1 0.043994
CLTC clathrin, heavy chain (Hc) 0.0438819
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0429857
B2M beta-2-microglobulin 0.0429826
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 0.0427927
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0427298
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0426798
ANXA2 annexin A2 0.0425291
WWTR1 WW domain containing transcription regulator 1 0.0421815
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0420853
HDAC9 histone deacetylase 9 0.0420804
DCBLD2 discoidin, CUB and LCCL domain containing 2 0.042052
BBX bobby sox homolog (Drosophila) 0.0416967
NAMPT nicotinamide phosphoribosyltransferase 0.0413328
ASPH aspartate beta-hydroxylase 0.041204
ZBTB20 zinc finger and BTB domain containing 20 0.0411372
CSDE1 cold shock domain containing E1, RNA-binding 0.0409713
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0408585
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.040858
AFF4 AF4/FMR2 family, member 4 0.0408254
PKM pyruvate kinase, muscle 0.0394569
INPP5F inositol polyphosphate-5-phosphatase F 0.0393893
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0386767
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0386453
KPNB1 karyopherin (importin) beta 1 0.0381434
SERPINA3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 0.0380662
ANXA5 annexin A5 0.0379231
SQSTM1 sequestosome 1 0.0378165
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0376727
PPP2R3A protein phosphatase 2, regulatory subunit B'', alpha 0.0374154
EP300 E1A binding protein p300 0.0371666
MARK3 MAP/microtubule affinity-regulating kinase 3 0.036582
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0363912
SFTPA2 surfactant protein A2 0.0358968
UBC ubiquitin C 0.035308
ELL2 elongation factor, RNA polymerase II, 2 0.0352456
UBE2E2 ubiquitin-conjugating enzyme E2E 2 0.0350024
PHF21A PHD finger protein 21A 0.0349723
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 0.0347487
ZNF697 zinc finger protein 697 0.03457
MKI67 marker of proliferation Ki-67 0.0345441
ENO1 enolase 1, (alpha) 0.0344336
RUNX1 runt-related transcription factor 1 0.0338025
TRIM33 tripartite motif containing 33 0.0337408
NGLY1 N-glycanase 1 0.0336274
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0335274
BRAF B-Raf proto-oncogene, serine/threonine kinase 0.0334283
COG5 component of oligomeric golgi complex 5 0.0333993
CD109 CD109 molecule 0.0330379
LSAMP limbic system-associated membrane protein 0.0328065
PCBP3 poly(rC) binding protein 3 0.0325337
GNB4 guanine nucleotide binding protein (G protein), beta polypeptide 4 0.0324624
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 0.0321659
MAN1A2 mannosidase, alpha, class 1A, member 2 0.0320121
MORF4L2 mortality factor 4 like 2 0.0319181
ALCAM activated leukocyte cell adhesion molecule 0.0315162
SETD5 SET domain containing 5 0.0314882
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0312889
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0311848
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0309607
TXNRD1 thioredoxin reductase 1 0.0309287
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0309118
HSPA8 heat shock 70kDa protein 8 0.0308651

decreased expression

Symbol Name Standardized Value
FRMD4A FERM domain containing 4A -0.0433184
MT2A metallothionein 2A -0.040045
RPS12 ribosomal protein S12 -0.0384831
TMSB10 thymosin beta 10 -0.0308532
RPL31 ribosomal protein L31 -0.0304426
RPS8 ribosomal protein S8 -0.0265871
RAD51B RAD51 paralog B -0.0261488
RPL37A ribosomal protein L37a -0.0260402
MFSD12 major facilitator superfamily domain containing 12 -0.0259117
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0254809
TPT1 tumor protein, translationally-controlled 1 -0.0240003
IER3 immediate early response 3 -0.0221206
RPL36 ribosomal protein L36 -0.0215837
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.021583
C10ORF90 chromosome 10 open reading frame 90 -0.0214734
NLGN1 neuroligin 1 -0.0213084
RPS23 ribosomal protein S23 -0.0204482
WWOX WW domain containing oxidoreductase -0.0199139
RPL9 ribosomal protein L9 -0.0197806
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0190413
RPS29 ribosomal protein S29 -0.0179499
MLLT3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 -0.0173659
HSPG2 heparan sulfate proteoglycan 2 -0.0173539
RPS16 ribosomal protein S16 -0.0173359
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.0169955
PEX5L peroxisomal biogenesis factor 5-like -0.016927
RPL26 ribosomal protein L26 -0.0167344
RPLP2 ribosomal protein, large, P2 -0.0159659
RPS3 ribosomal protein S3 -0.015957
PYGB phosphorylase, glycogen; brain -0.0159421
NOP56 NOP56 ribonucleoprotein -0.0158739
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0157878
RPS15 ribosomal protein S15 -0.0154793
PDE10A phosphodiesterase 10A -0.0154016
RPS13 ribosomal protein S13 -0.0152148
CSTPP1 centriolar satellite-associated tubulin polyglutamylase complex regulator 1 -0.0151391
HMGA1 high mobility group AT-hook 1 -0.0150874
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0150853
SCARB1 scavenger receptor class B, member 1 -0.0149993
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0149933
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0149788
DHFR dihydrofolate reductase -0.0149586
NPAS2 neuronal PAS domain protein 2 -0.0148999
SLC6A8 solute carrier family 6 (neurotransmitter transporter), member 8 -0.0147477
TYR tyrosinase -0.0146645
DLGAP1 discs, large (Drosophila) homolog-associated protein 1 -0.014377
RPL27 ribosomal protein L27 -0.0142432
FTL ferritin, light polypeptide -0.0140622
SLC1A4 solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 -0.0140003
RACK1 receptor for activated C kinase 1 -0.0139148
RPL37 ribosomal protein L37 -0.0138229
RPL28 ribosomal protein L28 -0.0136748
MELTF melanotransferrin -0.0136393
CNIH3 cornichon family AMPA receptor auxiliary protein 3 -0.0133001
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0132609
ACSL3 acyl-CoA synthetase long-chain family member 3 -0.012885
SREBF2 sterol regulatory element binding transcription factor 2 -0.0127443
NACA nascent polypeptide-associated complex alpha subunit -0.0126561
RPS25 ribosomal protein S25 -0.0126319
RPS27A ribosomal protein S27a -0.0125227
CRADD CASP2 and RIPK1 domain containing adaptor with death domain -0.0124197
RPL12 ribosomal protein L12 -0.0124126
ZC3H13 zinc finger CCCH-type containing 13 -0.0124023
RPL35A ribosomal protein L35a -0.0123336
KCNN2 potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2 -0.0123242
NAV3 neuron navigator 3 -0.0122795
RPS11 ribosomal protein S11 -0.0121184
NSA2 NSA2 ribosome biogenesis homolog (S. cerevisiae) -0.01208
CTNNA2 catenin (cadherin-associated protein), alpha 2 -0.0120441
DIS3L2 DIS3 like 3'-5' exoribonuclease 2 -0.0119275
NALF1 NALCN channel auxiliary factor 1 -0.0117813
EGFR epidermal growth factor receptor -0.0117406
UQCRB ubiquinol-cytochrome c reductase binding protein -0.0116566
CHRM3 cholinergic receptor, muscarinic 3 -0.0116469
SH3BGRL3 SH3 domain binding glutamate-rich protein like 3 -0.0115937
PRG2 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) -0.0115592
ZC3H12B zinc finger CCCH-type containing 12B -0.0115085
GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 -0.0113964
MTIF2 mitochondrial translational initiation factor 2 -0.0112805
ADCY1 adenylate cyclase 1 (brain) -0.0111306
ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 -0.0111055
EEF1D eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) -0.0110349
PLXND1 plexin D1 -0.0109775
RPL38 ribosomal protein L38 -0.0106939
APOD apolipoprotein D -0.0105415
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0105152
PAGE5 P antigen family, member 5 (prostate associated) -0.0104574
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) -0.0103638
IGF2 insulin-like growth factor 2 -0.0103024
VWA8 von Willebrand factor A domain containing 8 -0.0101333
SLF1 SMC5-SMC6 complex localization factor 1 -0.0100577
SNRPD3 small nuclear ribonucleoprotein D3 polypeptide 18kDa -0.0100564
ZCCHC14 zinc finger, CCHC domain containing 14 -0.0100531
RPL19 ribosomal protein L19 -0.0100373
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.00998338
MDN1 MDN1, midasin homolog (yeast) -0.00995329
SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) -0.00986639
GRK5 G protein-coupled receptor kinase 5 -0.00986504
PCNX4 pecanex 4 -0.00986023
NFIA nuclear factor I/A -0.0098102