5-Fluorouracil_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description 5-Fluorouracil perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the 5-Fluorouracil_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.138464
EREG epiregulin 0.102362
GOLGA4 golgin A4 0.0844484
AREG amphiregulin 0.0809144
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0758898
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0620968
RNF43 ring finger protein 43 0.0591886
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 0.0538235
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0526249
GDF15 growth differentiation factor 15 0.0524207
ZFAND3 zinc finger, AN1-type domain 3 0.0509785
PTEN phosphatase and tensin homolog 0.0475304
EIF1 eukaryotic translation initiation factor 1 0.0469065
INSIG1 insulin induced gene 1 0.046306
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.046087
PRAG1 PEAK1 related, kinase-activating pseudokinase 1 0.0436562
RNF145 ring finger protein 145 0.0431194
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0430315
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0426216
TPD52 tumor protein D52 0.0412337
DDB2 damage-specific DNA binding protein 2, 48kDa 0.0407004
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0405039
DSCAM Down syndrome cell adhesion molecule 0.0402664
OGA O-GlcNAcase 0.0397487
ARHGAP5 Rho GTPase activating protein 5 0.0393765
H1-0 H1.0 linker histone 0.0391901
FAM13A family with sequence similarity 13, member A 0.0388946
RPLP0 ribosomal protein, large, P0 0.0380839
DERA deoxyribose-phosphate aldolase (putative) 0.0373152
GSK3B glycogen synthase kinase 3 beta 0.0372966
HSD17B12 hydroxysteroid (17-beta) dehydrogenase 12 0.0368622
SETD5 SET domain containing 5 0.0356972
ARL15 ADP-ribosylation factor-like 15 0.0356172
PTBP3 polypyrimidine tract binding protein 3 0.0344954
PAN3 PAN3 poly(A) specific ribonuclease subunit 0.0342845
KLF3 Kruppel-like factor 3 (basic) 0.0341286
KDM3A lysine (K)-specific demethylase 3A 0.0334133
SPPL3 signal peptide peptidase like 3 0.0332253
UBC ubiquitin C 0.0330312
MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase 0.0317592
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0314822
SHROOM3 shroom family member 3 0.0313932
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) 0.0313853
CANX calnexin 0.0313385
TMTC2 transmembrane and tetratricopeptide repeat containing 2 0.0312446
PGK1 phosphoglycerate kinase 1 0.0310583
EPCAM epithelial cell adhesion molecule 0.0310431
GCC2 GRIP and coiled-coil domain containing 2 0.0305234
EXOC1 exocyst complex component 1 0.0300895
TXNIP thioredoxin interacting protein 0.0298143
PCDHB16 protocadherin beta 16 0.0298004
KDM2A lysine (K)-specific demethylase 2A 0.0295266
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 0.0295237
MON2 MON2 homolog (S. cerevisiae) 0.0293775
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0293527
CSNK1A1 casein kinase 1, alpha 1 0.0292954
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0290785
KDM7A lysine (K)-specific demethylase 7A 0.0289681
MINDY2 MINDY lysine 48 deubiquitinase 2 0.0287864
PNISR PNN-interacting serine/arginine-rich protein 0.028297
CDK19 cyclin-dependent kinase 19 0.0276768
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0273491
ATXN1 ataxin 1 0.0273032
NF1 neurofibromin 1 0.0272859
MBD5 methyl-CpG binding domain protein 5 0.0272643
MXI1 MAX interactor 1, dimerization protein 0.0271973
COPB1 coatomer protein complex, subunit beta 1 0.0271383
ERBIN erbb2 interacting protein 0.0268926
MARK3 MAP/microtubule affinity-regulating kinase 3 0.0268462
USP34 ubiquitin specific peptidase 34 0.0261779
CDH17 cadherin 17, LI cadherin (liver-intestine) 0.025878
TMF1 TATA element modulatory factor 1 0.0255079
COG5 component of oligomeric golgi complex 5 0.0254782
UBR2 ubiquitin protein ligase E3 component n-recognin 2 0.0254378
THOC2 THO complex 2 0.0252688
FBXW7 F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase 0.0248496
USP6NL USP6 N-terminal like 0.0247183
SCAF11 SR-related CTD-associated factor 11 0.0245177
ZFR zinc finger RNA binding protein 0.0244688
UBE2H ubiquitin-conjugating enzyme E2H 0.0243813
SOS1 son of sevenless homolog 1 (Drosophila) 0.0242887
ANKRD17 ankyrin repeat domain 17 0.0242117
ITFG1 integrin alpha FG-GAP repeat containing 1 0.0239757
DSPP dentin sialophosphoprotein 0.0239626
TENT2 terminal nucleotidyltransferase 2 0.0239041
NKTR natural killer cell triggering receptor 0.023858
KIF5B kinesin family member 5B 0.0236921
YTHDC1 YTH domain containing 1 0.0236906
SREBF2 sterol regulatory element binding transcription factor 2 0.0236629
NIPBL Nipped-B homolog (Drosophila) 0.023646
WASF2 WAS protein family, member 2 0.023571
FNIP1 folliculin interacting protein 1 0.0235658
FBXL20 F-box and leucine-rich repeat protein 20 0.0235466
CEP350 centrosomal protein 350kDa 0.0235314
CARD16 caspase recruitment domain family, member 16 0.023477
PATJ PATJ crumbs cell polarity complex component 0.0234669
PRSS3 protease, serine, 3 0.0234595
ITPRID2 ITPR interacting domain containing 2 0.0233662
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0231055
METTL15 methyltransferase like 15 0.023031

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.188272
NPSR1 neuropeptide S receptor 1 -0.151872
PTMA prothymosin, alpha -0.123737
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.116008
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.113829
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B -0.0955435
GMDS GDP-mannose 4,6-dehydratase -0.0712016
NALF1 NALCN channel auxiliary factor 1 -0.0702268
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0689535
VCL vinculin -0.0668208
ASPH aspartate beta-hydroxylase -0.0648707
EXT1 exostosin glycosyltransferase 1 -0.0569309
ONECUT3 one cut homeobox 3 -0.0566948
ALCAM activated leukocyte cell adhesion molecule -0.0552834
ACTG1 actin gamma 1 -0.0541911
SLC35F3 solute carrier family 35, member F3 -0.0529206
MT2A metallothionein 2A -0.0520975
GREB1L growth regulation by estrogen in breast cancer-like -0.0506491
RPS8 ribosomal protein S8 -0.0495793
PSD3 pleckstrin and Sec7 domain containing 3 -0.0478212
EGFR epidermal growth factor receptor -0.0477943
MUC5AC mucin 5AC, oligomeric mucus/gel-forming -0.0466213
RPS6 ribosomal protein S6 -0.0453998
ACTN4 actinin, alpha 4 -0.0438351
BCAT1 branched chain amino-acid transaminase 1, cytosolic -0.04281
FLNB filamin B, beta -0.0418762
GRB10 growth factor receptor-bound protein 10 -0.0414449
POTEF POTE ankyrin domain family, member F -0.0399452
HMGA1 high mobility group AT-hook 1 -0.0397391
RPL23 ribosomal protein L23 -0.0397085
LPP LIM domain containing preferred translocation partner in lipoma -0.0390632
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0377087
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0376353
HMGB1 high mobility group box 1 -0.0358291
RPS19 ribosomal protein S19 -0.0358052
SVIL supervillin -0.0355331
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0352134
RNF217 ring finger protein 217 -0.0351215
SAMD5 sterile alpha motif domain containing 5 -0.0346048
RAD51B RAD51 paralog B -0.0345488
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0342857
TPT1 tumor protein, translationally-controlled 1 -0.0337811
FHIT fragile histidine triad -0.0328585
RPL36 ribosomal protein L36 -0.0326293
PDLIM5 PDZ and LIM domain 5 -0.031409
LGALS3 lectin, galactoside-binding, soluble, 3 -0.0313807
MAML3 mastermind-like 3 (Drosophila) -0.0311553
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0308234
MPRIP myosin phosphatase Rho interacting protein -0.0299981
ARHGAP6 Rho GTPase activating protein 6 -0.029845
GSTP1 glutathione S-transferase pi 1 -0.0295433
SLCO1B3-SLCO1B7 SLCO1B3-SLCO1B7 readthrough -0.0294081
LSAMP limbic system-associated membrane protein -0.0291982
ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 -0.0289731
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0288443
RPL35A ribosomal protein L35a -0.0284962
MUC6 mucin 6, oligomeric mucus/gel-forming -0.0281771
FAT1 FAT atypical cadherin 1 -0.0277604
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0276475
PDE4D phosphodiesterase 4D, cAMP-specific -0.0276433
MUC17 mucin 17, cell surface associated -0.0273236
SYNE2 spectrin repeat containing, nuclear envelope 2 -0.027214
TUBA1B tubulin, alpha 1b -0.0271548
TFF1 trefoil factor 1 -0.0270612
NAB1 NGFI-A binding protein 1 (EGR1 binding protein 1) -0.0269716
LAMA4 laminin, alpha 4 -0.0266448
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0264667
S100A6 S100 calcium binding protein A6 -0.0260577
S100A10 S100 calcium binding protein A10 -0.0255307
SLC38A2 solute carrier family 38, member 2 -0.0254917
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0253767
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme -0.0252188
TUBB4B tubulin, beta 4B class IVb -0.0251102
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) -0.0250481
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide -0.0249471
TPM1 tropomyosin 1 (alpha) -0.0249198
CEMIP cell migration inducing protein, hyaluronan binding -0.0249075
RCOR1 REST corepressor 1 -0.0247799
MYH9 myosin, heavy chain 9, non-muscle -0.024596
MUC5B mucin 5B, oligomeric mucus/gel-forming -0.0244071
SLC2A1 solute carrier family 2 (facilitated glucose transporter), member 1 -0.0241416
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.023991
RPL9 ribosomal protein L9 -0.0239166
ANXA1 annexin A1 -0.0235763
RPL18 ribosomal protein L18 -0.023553
RPL34 ribosomal protein L34 -0.0234853
MT1X metallothionein 1X -0.023483
TPM4 tropomyosin 4 -0.0234787
RPS17 ribosomal protein S17 -0.0234735
MECOM MDS1 and EVI1 complex locus -0.0228296
B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 -0.022795
DENND1A DENN/MADD domain containing 1A -0.0226855
KLK10 kallikrein-related peptidase 10 -0.0225787
ATP2A2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 -0.0224748
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0223784
LRCH1 leucine-rich repeats and calponin homology (CH) domain containing 1 -0.0223399
PTPRK protein tyrosine phosphatase, receptor type, K -0.0222039
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase -0.0221507
CCSER1 coiled-coil serine-rich protein 1 -0.0220668
CEACAM5 carcinoembryonic antigen-related cell adhesion molecule 5 -0.021885