5637 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

197 genes with high or low copy number in 5637 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
SLC6A11 solute carrier family 6 (neurotransmitter transporter), member 11 3.2803
SNORA7A small nucleolar RNA, H/ACA box 7A 3.2803
FBLN2 fibulin 2 3.2803
HDGFL1 hepatoma derived growth factor-like 1 3.2803
NUP210 nucleoporin 210kDa 3.2803
DUOX2 dual oxidase 2 3.2803
CASC15 cancer susceptibility candidate 15 (non-protein coding) 3.2803
SOX4 SRY (sex determining region Y)-box 4 3.2803
HDAC11 histone deacetylase 11 3.2803
SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 3.2803
LINC00606 long intergenic non-protein coding RNA 606 3.2803
NBAT1 neuroblastoma associated transcript 1 3.2803
RPL32 ribosomal protein L32 3.2803
PRL prolactin 3.2803
IQSEC1 IQ motif and Sec7 domain 1 3.2803
TPRXL tetra-peptide repeat homeobox-like 3.2803
TMEM40 transmembrane protein 40 3.2803
WNT7A wingless-type MMTV integration site family, member 7A 3.2803
CAND2 cullin-associated and neddylation-dissociated 2 (putative) 3.2803
SLC6A1-AS1 SLC6A1 antisense RNA 1 3.2803
FGD5P1 FYVE, RhoGEF and PH domain containing 5 pseudogene 1 3.2803
MKRN2OS MKRN2 opposite strand 3.2792
TSEN2 TSEN2 tRNA splicing endonuclease subunit 3.27905
MKRN2 makorin ring finger protein 2 3.279
PPARG peroxisome proliferator-activated receptor gamma 3.27897
SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 3.2571
HRH1 histamine receptor H1 3.21601
ATG7 autophagy related 7 3.1525
RAF1 Raf-1 proto-oncogene, serine/threonine kinase 2.82203
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 2.74797
E2F3 E2F transcription factor 3 2.74773
CD24 CD24 molecule 2.74764
IL17RC interleukin 17 receptor C 2.59998
TTLL3 tubulin tyrosine ligase-like family member 3 2.59998
THUMPD3 THUMP domain containing 3 2.59998
ARPC4-TTLL3 ARPC4-TTLL3 readthrough 2.59998
PRRT3 proline-rich transmembrane protein 3 2.59998
LINC00852 long intergenic non-protein coding RNA 852 2.59998
BRPF1 bromodomain and PHD finger containing, 1 2.59998
JAGN1 jagunal homolog 1 (Drosophila) 2.59998
TATDN2 TatD DNase domain containing 2 2.59998
ATP2B2 ATPase, Ca++ transporting, plasma membrane 2 2.59998
RPUSD3 RNA pseudouridylate synthase domain containing 3 2.59998
MTMR14 myotubularin related protein 14 2.59998
CPNE9 copine family member IX 2.59998
IL17RE interleukin 17 receptor E 2.59998
MIR885 microRNA 885 2.59998
GHRL ghrelin/obestatin prepropeptide 2.59998
OGG1 8-oxoguanine DNA glycosylase 2.59998
IRAK2 interleukin-1 receptor-associated kinase 2 2.59998
BRK1 BRICK1, SCAR/WAVE actin-nucleating complex subunit 2.59998
FANCD2 Fanconi anemia, complementation group D2 2.59998
SEC13 SEC13 homolog (S. cerevisiae) 2.59998
CAMK1 calcium/calmodulin-dependent protein kinase I 2.59998
THUMPD3-AS1 THUMPD3 antisense RNA 1 2.59998
EMC3 ER membrane protein complex subunit 3 2.59998
CRELD1 cysteine-rich with EGF-like domains 1 2.59998
ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa 2.59998
PRRT3-AS1 PRRT3 antisense RNA 1 2.59998
CIDECP cell death-inducing DFFA-like effector c pseudogene 2.59998
LHFPL4 lipoma HMGIC fusion partner-like 4 2.59998
CIDEC cell death-inducing DFFA-like effector c 2.59998
TADA3 transcriptional adaptor 3 2.59998
LOC401052 uncharacterized LOC401052 2.59998
GHRLOS ghrelin opposite strand/antisense RNA 2.59998
SETD5 SET domain containing 5 2.59998
FANCD2OS FANCD2 opposite strand 2.59998
LINC00620 long intergenic non-protein coding RNA 620 2.59985
TAMM41 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 2.48552
TIMP4 TIMP metallopeptidase inhibitor 4 2.468
SYN2 synapsin II 2.4676
VHL von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase 2.45623
VGLL4 vestigial-like family member 4 2.30687
NAV2 neuron navigator 2 2.09521
SYNJ1 synaptojanin 1 1.88623
GAB2 GRB2-associated binding protein 2 1.88297
MIR802 microRNA 802 1.70427
CBR1 carbonyl reductase 1 1.64728
SETD4 SET domain containing 4 1.64728
DNAJC28 DnaJ (Hsp40) homolog, subfamily C, member 28 1.63868
CBR3 carbonyl reductase 3 1.60893
CHAF1B chromatin assembly factor 1, subunit B (p60) 1.5948
MORC3 MORC family CW-type zinc finger 3 1.59058
HUNK hormonally up-regulated Neu-associated kinase 1.58187
CBR3-AS1 CBR3 antisense RNA 1 1.578
CLDN14 claudin 14 1.57698
DOPEY2 dopey family member 2 1.55747
ZNF664 zinc finger protein 664 1.5571
TBC1D3B TBC1 domain family, member 3B 1.54605
PIGP phosphatidylinositol glycan anchor biosynthesis, class P 1.53357
RIPPLY3 ripply transcriptional repressor 3 1.53357
NCAM2 neural cell adhesion molecule 2 1.51391
LOC100133286 uncharacterized LOC100133286 1.49604
ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 1.49287
HLCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) 1.48694
DSCR3 Down syndrome critical region 3 1.46762
DSCR9 Down syndrome critical region 9 (non-protein coding) 1.46753
ZNF664-RFLNA ZNF664-RFLNA readthrough 1.46299
DDI1 DNA-damage inducible 1 homolog 1 (S. cerevisiae) 1.40292
CEP57 centrosomal protein 57kDa 1.39426
MTMR2 myotubularin related protein 2 1.39422
FAM76B family with sequence similarity 76, member B 1.39199
MIR1260B microRNA 1260b 1.385
JRKL JRK-like 1.38499
CCDC82 coiled-coil domain containing 82 1.38485
IZUMO1R IZUMO1 receptor, JUNO 1.36671
JRKL-AS1 JRKL antisense RNA 1 1.36579
TTC3 tetratricopeptide repeat domain 3 1.36572
LOC283194 uncharacterized LOC283194 1.36434
HEPHL1 hephaestin-like 1 1.35835
MIR4693 microRNA 4693 1.35602
ENDOD1 endonuclease domain containing 1 1.35441
GPR83 G protein-coupled receptor 83 1.3504
ANKRD49 ankyrin repeat domain 49 1.34858
MRE11A MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 1.34852
MTNR1B melatonin receptor 1B 1.34584
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 1.3441
SRSF8 serine/arginine-rich splicing factor 8 1.33703
TBC1D3H TBC1 domain family, member 3H 1.3365
PIWIL4 piwi-like RNA-mediated gene silencing 4 1.32976
C11ORF97 chromosome 11 open reading frame 97 1.32974
FUT4 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) 1.32945
AMOTL1 angiomotin like 1 1.32918

low copy number

Symbol Name Standardized Value
CHL1 cell adhesion molecule L1-like -3.21049
DHRS7C dehydrogenase/reductase (SDR family) member 7C -2.59447
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -2.59447
JPH1 junctophilin 1 -2.59447
GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 -2.5868
FSTL1 follistatin-like 1 -2.41176
ITIH3 inter-alpha-trypsin inhibitor heavy chain 3 -2.38614
TRAT1 T cell receptor associated transmembrane adaptor 1 -2.36666
STEAP3 STEAP family member 3, metalloreductase -2.3514
PLA1A phospholipase A1 member A -2.35139
DNAJC6 DnaJ (Hsp40) homolog, subfamily C, member 6 -2.34684
C2ORF73 chromosome 2 open reading frame 73 -2.20385
ERG v-ets avian erythroblastosis virus E26 oncogene homolog -2.20271
STAM signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 -2.14718
ADAM12 ADAM metallopeptidase domain 12 -2.09965
FAM163A family with sequence similarity 163, member A -2.09288
LOC400794 uncharacterized LOC400794 -2.09273
DAAM2 dishevelled associated activator of morphogenesis 2 -2.00401
EGFEM1P EGF-like and EMI domain containing 1, pseudogene -1.99828
STK3 serine/threonine kinase 3 -1.97833
LMNTD1 lamin tail domain containing 1 -1.97705
SLC6A10P solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene -1.94282
CR1L complement component (3b/4b) receptor 1-like -1.92909
LINC00299 long intergenic non-protein coding RNA 299 -1.92903
FTO fat mass and obesity associated -1.91157
TP53TG3D TP53 target 3D -1.91116
SHISA9 shisa family member 9 -1.86102
ZNF28 zinc finger protein 28 -1.84009
C15ORF27 chromosome 15 open reading frame 27 -1.79536
TMEM218 transmembrane protein 218 -1.73529
CCDC85A coiled-coil domain containing 85A -1.71572
LINC00273 long intergenic non-protein coding RNA 273 -1.66483
TMEM200A transmembrane protein 200A -1.64061
CES1 carboxylesterase 1 -1.62375
TSPEAR thrombospondin-type laminin G domain and EAR repeats -1.62085
GAB1 GRB2-associated binding protein 1 -1.57546
PTCH1 patched 1 -1.57024
NOS3 nitric oxide synthase 3 (endothelial cell) -1.55116
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 -1.54641
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 -1.5233
TUBB8 tubulin, beta 8 class VIII -1.44925
IGSF3 immunoglobulin superfamily, member 3 -1.44135
KCNU1 potassium channel, subfamily U, member 1 -1.41734
CACNA1D calcium channel, voltage-dependent, L type, alpha 1D subunit -1.39734
RPRD1A regulation of nuclear pre-mRNA domain containing 1A -1.37379
MIR762 microRNA 762 -1.37287
BCL7C B-cell CLL/lymphoma 7C -1.37287
FBXL19-AS1 FBXL19 antisense RNA 1 (head to head) -1.37287
CTF1 cardiotrophin 1 -1.37287
MIR4519 microRNA 4519 -1.37272
FBXL19 F-box and leucine-rich repeat protein 19 -1.37262
HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 -1.37232
STX1B syntaxin 1B -1.37232
ORAI3 ORAI calcium release-activated calcium modulator 3 -1.37227
SETD1A SET domain containing 1A -1.37217
STX4 syntaxin 4 -1.37207
ME3 malic enzyme 3, NADP(+)-dependent, mitochondrial -1.36979
CLUHP3 clustered mitochondria (cluA/CLU1) homolog pseudogene 3 -1.35646
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 -1.35486
ZNF668 zinc finger protein 668 -1.35435
ZNF646 zinc finger protein 646 -1.35435
AHSP alpha hemoglobin stabilizing protein -1.33894
COX6A2 cytochrome c oxidase subunit VIa polypeptide 2 -1.33885
ZNF843 zinc finger protein 843 -1.33885
YBX3P1 Y box binding protein 3 pseudogene 1 -1.33885
VKORC1 vitamin K epoxide reductase complex, subunit 1 -1.33684
PRSS53 protease, serine, 53 -1.33684
PYDC1 PYD (pyrin domain) containing 1 -1.33671
ARMC5 armadillo repeat containing 5 -1.3218
ITGAD integrin, alpha D -1.32171
TGFB1I1 transforming growth factor beta 1 induced transcript 1 -1.32154
SLC5A2 solute carrier family 5 (sodium/glucose cotransporter), member 2 -1.32154
ITGAX integrin, alpha X (complement component 3 receptor 4 subunit) -1.32145
BCKDK branched chain ketoacid dehydrogenase kinase -1.31999