697 Gene Set

Dataset CCLE Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description Human B cell precursor leukemia; established from the bone marrow of a 12-year-old boy with acute lymphoblastic leukemia (cALL) at relapse in 1979. (BRENDA Tissue and Enzyme Source Ontology, BTO_0001969)
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Genes

82 genes with high or low copy number in 697 relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
TEX41 testis expressed 41 (non-protein coding) 3.2803
ADORA3 adenosine A3 receptor 2.87017
ZDHHC14 zinc finger, DHHC-type containing 14 2.26151
CCR7 chemokine (C-C motif) receptor 7 1.89587
FAM149A family with sequence similarity 149, member A 1.85623
ETV6 ets variant 6 1.78248
ANKMY1 ankyrin repeat and MYND domain containing 1 1.60507
CDC73 cell division cycle 73 1.5591
IRF8 interferon regulatory factor 8 1.51385
EBF1 early B-cell factor 1 1.4716
CATSPER2 cation channel, sperm associated 2 1.47003
LOC643339 uncharacterized LOC643339 1.46806
KCNQ1 potassium channel, voltage gated KQT-like subfamily Q, member 1 1.44499
CKMT1A creatine kinase, mitochondrial 1A 1.42663
SWT1 SWT1 RNA endoribonuclease homolog (S. cerevisiae) 1.42031
SLIT3 slit homolog 3 (Drosophila) 1.40592
TRMT1L tRNA methyltransferase 1 homolog (S. cerevisiae)-like 1.39485
LINC00202-1 long intergenic non-protein coding RNA 202-1 1.37371
SYF2 SYF2 pre-mRNA-splicing factor 1.36389
CELP carboxyl ester lipase pseudogene 1.32959

low copy number

Symbol Name Standardized Value
KIAA0125 KIAA0125 -2.73326
SULT1A1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 -2.67374
MTM1 myotubularin 1 -2.59447
ZNF595 zinc finger protein 595 -2.56347
OPRK1 opioid receptor, kappa 1 -2.50701
CALN1 calneuron 1 -2.43791
GP6 glycoprotein VI (platelet) -2.34469
ZNF718 zinc finger protein 718 -2.34058
RASGRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) -2.28051
NLRP7 NLR family, pyrin domain containing 7 -2.24478
SLC1A7 solute carrier family 1 (glutamate transporter), member 7 -2.20334
PIK3AP1 phosphoinositide-3-kinase adaptor protein 1 -2.20312
EHD4 EH-domain containing 4 -2.20312
DNAH11 dynein, axonemal, heavy chain 11 -2.0964
FAM47A family with sequence similarity 47, member A -2.09288
HEBP1 heme binding protein 1 -2.0024
NXPH1 neurexophilin 1 -1.90217
IRAK2 interleukin-1 receptor-associated kinase 2 -1.86092
DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 -1.80817
CLCN4 chloride channel, voltage-sensitive 4 -1.67735
DAPK1 death-associated protein kinase 1 -1.67665
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) -1.6761
FRMPD2B FERM and PDZ domain containing 2B, pseudogene -1.54034
ADAM6 ADAM metallopeptidase domain 6 (pseudogene) -1.48961
C1QTNF7 C1q and tumor necrosis factor related protein 7 -1.46177
CPEB2 cytoplasmic polyadenylation element binding protein 2 -1.46003
NKX3-2 NK3 homeobox 2 -1.45541
LINC01096 long intergenic non-protein coding RNA 1096 -1.45541
LINC01097 long intergenic non-protein coding RNA 1097 -1.45541
MIR5091 microRNA 5091 -1.4554
TAS2R39 taste receptor, type 2, member 39 -1.44232
CC2D2A coiled-coil and C2 domain containing 2A -1.43887
CD38 CD38 molecule -1.43884
ZBED11 zinc finger BED-type containing 11 -1.43883
FGFBP1 fibroblast growth factor binding protein 1 -1.43856
FGFBP2 fibroblast growth factor binding protein 2 -1.43856
TAPT1 transmembrane anterior posterior transformation 1 -1.43795
TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) -1.43793
CPEB2-AS1 CPEB2 antisense RNA 1 (head to head) -1.43723
LINC01085 long intergenic non-protein coding RNA 1085 -1.43505
BOD1L1 biorientation of chromosomes in cell division 1-like 1 -1.43275
PIP prolactin-induced protein -1.42953
LAP3 leucine aminopeptidase 3 -1.4292
MED28 mediator complex subunit 28 -1.42918
CLRN2 clarin 2 -1.42916
BST1 bone marrow stromal cell antigen 1 -1.41744
FBXL5 F-box and leucine-rich repeat protein 5 -1.41741
DCAF16 DDB1 and CUL4 associated factor 16 -1.40835
QDPR quinoid dihydropteridine reductase -1.40831
NCAPG non-SMC condensin I complex, subunit G -1.38851
SCN3B sodium channel, voltage gated, type III beta subunit -1.38342
MIR572 microRNA 572 -1.38261
HS3ST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 -1.38261
FAM184B family with sequence similarity 184, member B -1.3697
HSP90AB2P heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene -1.36637
LINC00226 long intergenic non-protein coding RNA 226 -1.36365
SOX5 SRY (sex determining region Y)-box 5 -1.34575
HMGN3 high mobility group nucleosomal binding domain 3 -1.3296
HMGN3-AS1 HMGN3 antisense RNA 1 -1.32957
RAB28 RAB28, member RAS oncogene family -1.32634
HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 -1.32475
ZNF518B zinc finger protein 518B -1.32265