9-ING-41_LOX-IMVI Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description 9-ING-41 perturbation in LOX-IMVI cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the 9-ING-41_LOX-IMVI drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.220607
EEF2 eukaryotic translation elongation factor 2 0.145422
EXT1 exostosin glycosyltransferase 1 0.141038
HDAC9 histone deacetylase 9 0.139269
DTNA dystrobrevin, alpha 0.10245
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0997622
RPS6 ribosomal protein S6 0.0953867
SAMD4A sterile alpha motif domain containing 4A 0.0884855
RPS12 ribosomal protein S12 0.0884662
EIF1 eukaryotic translation initiation factor 1 0.0773311
CD44 CD44 molecule (Indian blood group) 0.0751741
RPS2 ribosomal protein S2 0.0741961
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0694517
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0679718
RPS3 ribosomal protein S3 0.0650683
JMJD1C jumonji domain containing 1C 0.0589804
LIMS1 LIM and senescent cell antigen-like domains 1 0.0564191
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0550507
NAV3 neuron navigator 3 0.0547359
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0525427
USP34 ubiquitin specific peptidase 34 0.05234
RACK1 receptor for activated C kinase 1 0.0518796
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.0507376
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0505069
ZSWIM6 zinc finger, SWIM-type containing 6 0.0497359
SLC38A2 solute carrier family 38, member 2 0.049684
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0481109
RFX3 regulatory factor X, 3 (influences HLA class II expression) 0.0470246
MYO10 myosin X 0.0464165
RUNX1 runt-related transcription factor 1 0.0458814
MCTP1 multiple C2 domains, transmembrane 1 0.0451814
RPL7 ribosomal protein L7 0.0439698
PBX3 pre-B-cell leukemia homeobox 3 0.0408132
CXCL8 chemokine (C-X-C motif) ligand 8 0.040437
PTPRG protein tyrosine phosphatase, receptor type, G 0.0401674
KYNU kynureninase 0.0388433
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0388075
RPS8 ribosomal protein S8 0.0379644
ANKRD28 ankyrin repeat domain 28 0.037692
GPHN gephyrin 0.037324
LOC102724023 ES1 protein homolog, mitochondrial 0.0365965
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0363512
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0357018
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0352762
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0348279
RPS17 ribosomal protein S17 0.034021
EFNA5 ephrin-A5 0.0333582
PRKG1 protein kinase, cGMP-dependent, type I 0.0331523
RABGAP1L RAB GTPase activating protein 1-like 0.0328421
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0320531
PTPRK protein tyrosine phosphatase, receptor type, K 0.0319085
NFATC2 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 0.0318775
TRIO trio Rho guanine nucleotide exchange factor 0.0318211
RPL4 ribosomal protein L4 0.0313088
GLS2 glutaminase 2 (liver, mitochondrial) 0.0306677
RND3 Rho family GTPase 3 0.0302363
MAML2 mastermind-like 2 (Drosophila) 0.0296493
OSBPL8 oxysterol binding protein-like 8 0.0292196
RPL37A ribosomal protein L37a 0.028899
SDCCAG8 serologically defined colon cancer antigen 8 0.0285143
TXNIP thioredoxin interacting protein 0.0281574
SATB2 SATB homeobox 2 0.0268402
BCAS3 breast carcinoma amplified sequence 3 0.026799
MARCHF4 membrane associated ring-CH-type finger 4 0.0266699
SET SET nuclear proto-oncogene 0.0264714
ZEB1 zinc finger E-box binding homeobox 1 0.0263588
RASAL2 RAS protein activator like 2 0.0260061
DPYD dihydropyrimidine dehydrogenase 0.0251617
BPTF bromodomain PHD finger transcription factor 0.0250983
HMGA2 high mobility group AT-hook 2 0.0250421
AHNAK AHNAK nucleoprotein 0.0246607
EFNB2 ephrin-B2 0.0245208
WNK1 WNK lysine deficient protein kinase 1 0.024436
EMP1 epithelial membrane protein 1 0.0244122
CDK6 cyclin-dependent kinase 6 0.0233456
ZCCHC7 zinc finger, CCHC domain containing 7 0.0232187
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0231358
ENO1 enolase 1, (alpha) 0.0229701
LIMA1 LIM domain and actin binding 1 0.0229655
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0228773
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0228582
RPL12 ribosomal protein L12 0.0228421
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 0.0227243
ADAM32 ADAM metallopeptidase domain 32 0.0227126
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0224743
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0223706
AGO3 argonaute RISC catalytic component 3 0.0223315
RIMS2 regulating synaptic membrane exocytosis 2 0.0222419
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0222312
ZNF638 zinc finger protein 638 0.0222143
TLE4 transducin-like enhancer of split 4 0.0221323
EXOC6B exocyst complex component 6B 0.0218384
DST dystonin 0.02182
MED13L mediator complex subunit 13-like 0.0217155
MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase 0.0216048
INTS6 integrator complex subunit 6 0.0214961
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0214832
CSNK1A1 casein kinase 1, alpha 1 0.0213934
DOCK1 dedicator of cytokinesis 1 0.0212195
FOXP1 forkhead box P1 0.0211715

decreased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.234498
TMSB10 thymosin beta 10 -0.204722
PTMA prothymosin, alpha -0.185239
MMP12 matrix metallopeptidase 12 -0.13472
SLC8A1 solute carrier family 8 (sodium/calcium exchanger), member 1 -0.124825
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0949301
AKAP12 A kinase (PRKA) anchor protein 12 -0.0808018
MT2A metallothionein 2A -0.0787808
VIM vimentin -0.0767188
TPM4 tropomyosin 4 -0.0739476
PHACTR1 phosphatase and actin regulator 1 -0.0725229
RPLP1 ribosomal protein, large, P1 -0.0689715
CDH13 cadherin 13 -0.0677567
EPB41L2 erythrocyte membrane protein band 4.1-like 2 -0.0630749
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0616664
FN1 fibronectin 1 -0.0604235
LIMCH1 LIM and calponin homology domains 1 -0.0551826
PKM pyruvate kinase, muscle -0.0520565
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0504515
LSAMP limbic system-associated membrane protein -0.0495981
KDM3A lysine (K)-specific demethylase 3A -0.0494141
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0486311
POTEF POTE ankyrin domain family, member F -0.0475707
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0473435
UBR5 ubiquitin protein ligase E3 component n-recognin 5 -0.0469911
NTM neurotrimin -0.0466191
ARHGAP18 Rho GTPase activating protein 18 -0.0462644
YBX1 Y box binding protein 1 -0.0450399
KIAA1549L KIAA1549-like -0.0435489
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 -0.0435055
CANX calnexin -0.043179
ELL2 elongation factor, RNA polymerase II, 2 -0.0412742
RPL35A ribosomal protein L35a -0.0409579
CALR calreticulin -0.0400557
RAD21 RAD21 homolog (S. pombe) -0.0395773
ANXA2 annexin A2 -0.0389711
ZNF292 zinc finger protein 292 -0.0383257
FTL ferritin, light polypeptide -0.0379152
CAVIN1 caveolae associated protein 1 -0.0370652
NDRG1 N-myc downstream regulated 1 -0.0367782
TOP2A topoisomerase (DNA) II alpha 170kDa -0.03635
PGK1 phosphoglycerate kinase 1 -0.0363061
PFN1 profilin 1 -0.0361846
CENPF centromere protein F, 350/400kDa -0.0358267
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 -0.0356929
VCL vinculin -0.0354598
UGCG UDP-glucose ceramide glucosyltransferase -0.0341657
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0339436
NAMPT nicotinamide phosphoribosyltransferase -0.0337962
ADAM9 ADAM metallopeptidase domain 9 -0.0336845
NRP2 neuropilin 2 -0.0334268
DIAPH3 diaphanous-related formin 3 -0.0319222
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0315069
RPS21 ribosomal protein S21 -0.0311901
RBM39 RNA binding motif protein 39 -0.0310959
PLEKHA5 pleckstrin homology domain containing, family A member 5 -0.0310709
LMAN1 lectin, mannose-binding, 1 -0.0310105
APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 -0.030445
RTN4 reticulon 4 -0.0304011
SEPTIN7 septin 7 -0.0302513
IFI16 interferon, gamma-inducible protein 16 -0.0299873
TPI1 triosephosphate isomerase 1 -0.0297455
EGR1 early growth response 1 -0.0297455
QKI QKI, KH domain containing, RNA binding -0.0295563
H1-0 H1.0 linker histone -0.0295377
LOC112694756 uncharaterized LOC112694756 -0.0295003
TMEM263 transmembrane protein 263 -0.0294383
COL6A1 collagen, type VI, alpha 1 -0.0293494
ASPH aspartate beta-hydroxylase -0.0292979
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.028707
FAM162A family with sequence similarity 162, member A -0.02862
BNC2 basonuclin 2 -0.0285745
BTG1 B-cell translocation gene 1, anti-proliferative -0.0280349
CNOT2 CCR4-NOT transcription complex, subunit 2 -0.0277745
HDLBP high density lipoprotein binding protein -0.0277532
MT1X metallothionein 1X -0.0275978
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0275935
HMGA1 high mobility group AT-hook 1 -0.027585
CCDC80 coiled-coil domain containing 80 -0.0275332
WSB1 WD repeat and SOCS box containing 1 -0.0274038
RPL13A ribosomal protein L13a -0.0273309
KDM5B lysine (K)-specific demethylase 5B -0.0272876
MYH9 myosin, heavy chain 9, non-muscle -0.0272033
LMNA lamin A/C -0.02708
GNAS GNAS complex locus -0.0266656
DNER delta/notch-like EGF repeat containing -0.0266183
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.026522
C2CD2 C2 calcium-dependent domain containing 2 -0.026317
SF3B2 splicing factor 3b, subunit 2, 145kDa -0.0261567
NLGN1 neuroligin 1 -0.0260474
RPS24 ribosomal protein S24 -0.0257903
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0257434
PNISR PNN-interacting serine/arginine-rich protein -0.0256736
RPS19 ribosomal protein S19 -0.0253482
DEK DEK proto-oncogene -0.0251658
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 -0.0249441
SETD5 SET domain containing 5 -0.0249101
GCC2 GRIP and coiled-coil domain containing 2 -0.0245543
ANLN anillin, actin binding protein -0.024121
VEPH1 ventricular zone expressed PH domain-containing 1 -0.0239281