ABC-1 Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Similar Terms
Downloads & Tools

Genes

290 genes with high or low copy number in ABC-1 relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
RAD21L1 RAD21-like 1 (S. pombe) 3.12177
ANGPT4 angiopoietin 4 3.12177
SLC52A3 solute carrier family 52 (riboflavin transporter), member 3 3.12177
RSPO4 R-spondin 4 3.12177
SDCBP2-AS1 SDCBP2 antisense RNA 1 3.12177
TCF15 transcription factor 15 (basic helix-loop-helix) 3.12177
SNPH syntaphilin 3.12177
FKBP1A-SDCBP2 FKBP1A-SDCBP2 readthrough (NMD candidate) 3.12177
FAM110A family with sequence similarity 110, member A 3.12177
PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) 3.12177
SCRT2 scratch family zinc finger 2 3.12177
FKBP1A FK506 binding protein 1A, 12kDa 3.12177
SDCBP2 syndecan binding protein (syntenin) 2 3.12177
CSNK2A1 casein kinase 2, alpha 1 polypeptide 3.12177
SRXN1 sulfiredoxin 1 3.12177
C20ORF202 chromosome 20 open reading frame 202 3.12177
TMEM74B transmembrane protein 74B 3.12177
SIRPA signal-regulatory protein alpha 2.93899
ZNF616 zinc finger protein 616 2.93899
NSFL1C NSFL1 (p97) cofactor (p47) 2.93899
LOC100289473 cytoskeleton associated protein 2-like pseudogene 2.93899
SIRPG signal-regulatory protein gamma 2.93899
STK35 serine/threonine kinase 35 2.93899
HAO1 hydroxyacid oxidase (glycolate oxidase) 1 2.93899
SIRPD signal-regulatory protein delta 2.93899
SIRPB2 signal-regulatory protein beta 2 2.93899
PDYN prodynorphin 2.93899
LAMP5 lysosomal-associated membrane protein family, member 5 2.93899
TMX4 thioredoxin-related transmembrane protein 4 2.93899
PCED1A PC-esterase domain containing 1A 2.76305
NOP56 NOP56 ribonucleoprotein 2.76305
ZNF577 zinc finger protein 577 2.76305
EBF4 early B-cell factor 4 2.76305
IDH3B isocitrate dehydrogenase 3 (NAD+) beta 2.76305
ITPA inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 2.76305
ZNF649 zinc finger protein 649 2.76305
UBOX5 U-box domain containing 5 2.76305
NDUFAF5 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 2.76305
ESF1 ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) 2.76305
MRPS26 mitochondrial ribosomal protein S26 2.76305
C20ORF194 chromosome 20 open reading frame 194 2.76305
FPR3 formyl peptide receptor 3 2.76305
ZNF432 zinc finger protein 432 2.76305
SLC4A11 solute carrier family 4, sodium borate transporter, member 11 2.76305
PAK7 p21 protein (Cdc42/Rac)-activated kinase 7 2.76305
TMEM239 transmembrane protein 239 2.76305
LZTS3 leucine zipper, putative tumor suppressor family member 3 2.76305
ZNF350 zinc finger protein 350 2.76305
VPS16 vacuolar protein sorting 16 homolog (S. cerevisiae) 2.76305
ATRN attractin 2.76305
SNORD110 small nucleolar RNA, C/D box 110 2.76305
ZNF614 zinc finger protein 614 2.76305
AVP arginine vasopressin 2.76305
OXT oxytocin/neurophysin I prepropeptide 2.76305
GNRH2 gonadotropin-releasing hormone 2 2.76305
ZNF613 zinc finger protein 613 2.76305
ZNF615 zinc finger protein 615 2.76305
FASTKD5 FAST kinase domains 5 2.76305
SNAP25 synaptosomal-associated protein, 25kDa 2.76305
BTBD3 BTB (POZ) domain containing 3 2.76305
UBOX5-AS1 UBOX5 antisense RNA 1 2.76305
DDRGK1 DDRGK domain containing 1 2.76305
ZNF841 zinc finger protein 841 2.76305
MIR1292 microRNA 1292 2.76305
SEL1L2 sel-1 suppressor of lin-12-like 2 (C. elegans) 2.76305
CPXM1 carboxypeptidase X (M14 family), member 1 2.76305
C20ORF141 chromosome 20 open reading frame 141 2.76305
TMC2 transmembrane channel-like 2 2.64759
TGM3 transglutaminase 3 2.64759
TGM6 transglutaminase 6 2.64759
SNAP25-AS1 SNAP25 antisense RNA 1 2.64759
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) 2.64759
SNORD119 small nucleolar RNA, C/D box 119 2.64759
SNRPB small nuclear ribonucleoprotein polypeptides B and B1 2.64759
ANKEF1 ankyrin repeat and EF-hand domain containing 1 2.64759
ZNF343 zinc finger protein 343 2.64759
SPTLC3 serine palmitoyltransferase, long chain base subunit 3 2.59653
ISM1 isthmin 1, angiogenesis inhibitor 2.59653
ISM1-AS1 ISM1 antisense RNA 1 2.59653
TASP1 taspase, threonine aspartase, 1 2.49065
GGTLC1 gamma-glutamyltransferase light chain 1 2.49065
CST5 cystatin D 2.49065
MUC4 mucin 4, cell surface associated 2.49065
MUC20 mucin 20, cell surface associated 2.49065
CST2 cystatin SA 2.44392
CST4 cystatin S 2.44392
CST1 cystatin SN 2.44392
CST9L cystatin 9-like 2.44392
CST9 cystatin 9 (testatin) 2.44392
CST3 cystatin C 2.44392
CST13P cystatin 13, pseudogene 2.41451
CST8 cystatin 8 (cystatin-related epididymal specific) 2.41451
CSTL1 cystatin-like 1 2.39327
NXT1 nuclear transport factor 2-like export factor 1 2.39327
CST11 cystatin 11 2.39327
NAPB N-ethylmaleimide-sensitive factor attachment protein, beta 2.39327
GZF1 GDNF-inducible zinc finger protein 1 2.39327
PLEKHG4B pleckstrin homology domain containing, family G (with RhoGef domain) member 4B 2.22123
LRRC14B leucine rich repeat containing 14B 2.22123
CLPTM1L CLPTM1-like 2.21727
IRX4 iroquois homeobox 4 2.21727
PDCD6 programmed cell death 6 2.21727
IRX2 iroquois homeobox 2 2.21727
CCDC127 coiled-coil domain containing 127 2.21727
UBE2QL1 ubiquitin-conjugating enzyme E2Q family-like 1 2.21727
SDHA succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 2.21727
C5ORF38 chromosome 5 open reading frame 38 2.21727
EXOC3-AS1 EXOC3 antisense RNA 1 2.21727
MIR4457 microRNA 4457 2.21727
AHRR aryl-hydrocarbon receptor repressor 2.21727
MED10 mediator complex subunit 10 2.21258
MIR4456 microRNA 4456 2.21258
EXOC3 exocyst complex component 3 2.21258
TPPP tubulin polymerization promoting protein 2.21258
MIR4277 microRNA 4277 2.21258
CEP72 centrosomal protein 72kDa 2.21258
MRPL36 mitochondrial ribosomal protein L36 2.21258
SLC9A3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 2.21258
PP7080 uncharacterized LOC25845 2.21258
MIR4454 microRNA 4454 2.21258
NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase) 2.21258
TRIP13 thyroid hormone receptor interactor 13 2.21258
SLC6A19 solute carrier family 6 (neutral amino acid transporter), member 19 2.21258
LOC100996325 uncharacterized LOC100996325 2.21258
FLJ33360 FLJ33360 protein 2.21258
C5ORF49 chromosome 5 open reading frame 49 2.21096
TERT telomerase reverse transcriptase 2.21096
LPCAT1 lysophosphatidylcholine acyltransferase 1 2.21096
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 2.21096
ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif, 16 2.21096
SDHAP3 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 2.21096
LOC728613 programmed cell death 6 pseudogene 2.21096
IRX1 iroquois homeobox 1 2.21096
SLC6A18 solute carrier family 6 (neutral amino acid transporter), member 18 2.21096
ROPN1L rhophilin associated tail protein 1-like 2.20309
FASTKD3 FAST kinase domains 3 2.20309
ANKRD33B ankyrin repeat domain 33B 2.20309
ROPN1L-AS1 ROPN1L antisense RNA 1 2.20309
FAM173B family with sequence similarity 173, member B 2.20309
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 2.20309
CMBL carboxymethylenebutenolidase homolog (Pseudomonas) 2.20309
DAP death-associated protein 2.20309
ZDHHC11 zinc finger, DHHC-type containing 11 2.20309
MARCH6 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase 2.20309
MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase 2.20309
LOC729506 uncharacterized LOC729506 2.20053
MIR4636 microRNA 4636 2.20053
MIR4458 microRNA 4458 2.20053
C5ORF22 chromosome 5 open reading frame 22 2.20053
TARS threonyl-tRNA synthetase 2.20053
LOC285696 uncharacterized LOC285696 2.20053
DROSHA drosha, ribonuclease type III 2.20053
NPR3 natriuretic peptide receptor 3 2.19863
SNORD72 small nucleolar RNA, C/D box 72 2.19863
MARCH11 membrane-associated ring finger (C3HC4) 11 2.19863
SEMA5A sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A 2.19863
BASP1 brain abundant, membrane attached signal protein 1 2.19863
LOC100506548 uncharacterized LOC100506548 2.19863
RPL37 ribosomal protein L37 2.19863
CARD6 caspase recruitment domain family, member 6 2.19863
FAM134B family with sequence similarity 134, member B 2.19863
SNORD123 small nucleolar RNA, C/D box 123 2.19863
ZNF622 zinc finger protein 622 2.19863
TTC33 tetratricopeptide repeat domain 33 2.19863
LOC340113 uncharacterized LOC340113 2.19863
TAS2R1 taste receptor, type 2, member 1 2.19863
SUB1 SUB1 homolog (S. cerevisiae) 2.19863
PRKAA1 protein kinase, AMP-activated, alpha 1 catalytic subunit 2.19863
RXFP3 relaxin/insulin-like family peptide receptor 3 2.19863
SLC45A2 solute carrier family 45, member 2 2.19301
C7 complement component 7 2.19301
MROH2B maestro heat-like repeat family member 2B 2.19301
PLCXD3 phosphatidylinositol-specific phospholipase C, X domain containing 3 2.19301
AMACR alpha-methylacyl-CoA racemase 2.19301
C1QTNF3 C1q and tumor necrosis factor related protein 3 2.19301
LOC401177 uncharacterized LOC401177 2.19301
MYO10 myosin X 2.19301
PTGER4 prostaglandin E receptor 4 (subtype EP4) 2.19301
DAB2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) 2.18778
DNAH5 dynein, axonemal, heavy chain 5 2.18778
MIR4637 microRNA 4637 2.18778
EGFLAM EGF-like, fibronectin type III and laminin G domains 2.18778
MIR3650 microRNA 3650 2.18778
FYB FYN binding protein 2.18778
RICTOR RPTOR independent companion of MTOR, complex 2 2.18778
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 2.18778
EGFLAM-AS4 EGFLAM antisense RNA 4 2.18778
NUP155 nucleoporin 155kDa 2.18778
C9 complement component 9 2.18778
LOC100130744 uncharacterized LOC100130744 2.18778
EGFLAM-AS2 EGFLAM antisense RNA 2 2.18778
LIFR leukemia inhibitory factor receptor alpha 2.18778
GDNF-AS1 GDNF antisense RNA 1 (head to head) 2.18778
GDNF glial cell derived neurotrophic factor 2.18778
FAM105A family with sequence similarity 105, member A 2.18778
ANKH ANKH inorganic pyrophosphate transport regulator 2.18778
C6 complement component 6 2.18778
C5ORF42 chromosome 5 open reading frame 42 2.18778
WDR70 WD repeat domain 70 2.18778
LOC648987 uncharacterized LOC648987 2.18124
ANXA2R annexin A2 receptor 2.18124
TRIO trio Rho guanine nucleotide exchange factor 2.18124
LOC646719 2.18124
C5ORF51 chromosome 5 open reading frame 51 2.18124
GHR growth hormone receptor 2.18124
FBXO4 F-box protein 4 2.18124
LOC153684 uncharacterized LOC153684 2.18124
ZBTB35 zinc finger and BTB domain containing 35 2.18124
CCL28 chemokine (C-C motif) ligand 28 2.18124
LOC100132356 uncharacterized LOC100132356 2.18124
NIPBL Nipped-B homolog (Drosophila) 2.18124
OXCT1 3-oxoacid CoA transferase 1 2.18124
HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) 2.18124
LOC100506639 uncharacterized LOC100506639 2.18124
OSMR oncostatin M receptor 2.18124
MRPS30 mitochondrial ribosomal protein S30 2.17694
CCDC152 coiled-coil domain containing 152 2.17694
UGT3A1 UDP glycosyltransferase 3 family, polypeptide A1 2.17694
PAIP1 poly(A) binding protein interacting protein 1 2.17694
SKP2 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase 2.17694
C5ORF28 chromosome 5 open reading frame 28 2.17694
SEPP1 selenoprotein P, plasma, 1 2.17694
LMBRD2 LMBR1 domain containing 2 2.17694
UGT3A2 UDP glycosyltransferase 3 family, polypeptide A2 2.17694
FBXL7 F-box and leucine-rich repeat protein 7 2.17694
MIR580 microRNA 580 2.17694
RANBP3L RAN binding protein 3-like 2.17694
C5ORF34 chromosome 5 open reading frame 34 2.17694
FGF10 fibroblast growth factor 10 2.16947
HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 2.16947
NNT nicotinamide nucleotide transhydrogenase 2.16816
LOC340107 uncharacterized LOC340107 2.16307
FSTL5 follistatin-like 5 2.14311
SLX4IP SLX4 interacting protein 2.12439
JAG1 jagged 1 2.12439
MKKS McKusick-Kaufman syndrome 2.12225
PLCB4 phospholipase C, beta 4 2.12225
LOC339593 uncharacterized LOC339593 2.12225
PTPRA protein tyrosine phosphatase, receptor type, A 2.12225
FLRT3 fibronectin leucine rich transmembrane protein 3 2.12225
SYNDIG1 synapse differentiation inducing 1 2.10177
MIR570 microRNA 570 2.09628
FLJ33581 uncharacterized LOC400839 2.09431
MACROD2 MACRO domain containing 2 2.09385
SI sucrase-isomaltase (alpha-glucosidase) 2.06505
BCHE butyrylcholinesterase 2.06473
SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 2.06473
SLITRK3 SLIT and NTRK-like family, member 3 2.06473
SNORA51 small nucleolar RNA, H/ACA box 51 2.06473
ZBBX zinc finger, B-box domain containing 2.06316
GOLIM4 golgi integral membrane protein 4 2.06316
WDR49 WD repeat domain 49 2.06316
SERPINI1 serpin peptidase inhibitor, clade I (neuroserpin), member 1 2.06316
PDCD10 programmed cell death 10 2.06316
MIR551B microRNA 551b 2.0622
EGFEM1P EGF-like and EMI domain containing 1, pseudogene 2.06105
LOC442132 golgin A6 family-like 1 pseudogene 2.05559
BRD9 bromodomain containing 9 2.05559
ADCY2 adenylate cyclase 2 (brain) 2.05422
MIR4279 microRNA 4279 2.05311
MTMR12 myotubularin related protein 12 2.05311
ZFR zinc finger RNA binding protein 2.05311
ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 2.05242
LOC285692 uncharacterized LOC285692 2.0522
GOLPH3 golgi phosphoprotein 3 (coat-protein) 2.0521
PDZD2 PDZ domain containing 2 2.0521
CTNND2 catenin (cadherin-associated protein), delta 2 2.05129
LSP1P3 lymphocyte-specific protein 1 pseudogene 3 2.05072
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) 2.05045
PRDM9 PR domain containing 9 2.05041
CDH10 cadherin 10, type 2 (T2-cadherin) 2.05014
PMCHL1 pro-melanin-concentrating hormone-like 1, pseudogene 2.04969
CDH9 cadherin 9, type 2 (T1-cadherin) 2.04969
GUSBP1 glucuronidase, beta pseudogene 1 2.0489
CDH18 cadherin 18, type 2 2.0489
CDH12 cadherin 12, type 2 (N-cadherin 2) 2.0489

low copy number

Symbol Name Standardized Value
PBRM1 polybromo 1 -3.83684
CD93 CD93 molecule -3.41265
THBD thrombomodulin -3.41265
SSTR4 somatostatin receptor 4 -3.41265
FOXA2 forkhead box A2 -3.41265
LINC00656 long intergenic non-protein coding RNA 656 -3.41265
LINC00261 long intergenic non-protein coding RNA 261 -3.41265
APOL5 apolipoprotein L, 5 -3.2703
RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 -3.2703
VCAN versican -3.24687
LOC284788 uncharacterized LOC284788 -3.17926
PSG4 pregnancy specific beta-1-glycoprotein 4 -2.75301
HCG4B HLA complex group 4B (non-protein coding) -2.75184
LOC284344 uncharacterized LOC284344 -2.74526