APTO-253_C32 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description APTO-253 perturbation in C32 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the APTO-253_C32 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FMN1 formin 1 0.0872971
PDIA4 protein disulfide isomerase family A, member 4 0.0625373
CDC73 cell division cycle 73 0.0582667
NLGN1 neuroligin 1 0.056209
TLE4 transducin-like enhancer of split 4 0.0527726
LOC102724023 ES1 protein homolog, mitochondrial 0.0500228
HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 0.0487272
KMT2E lysine (K)-specific methyltransferase 2E 0.0477728
CENPF centromere protein F, 350/400kDa 0.0466518
KHDRBS3 KH domain containing, RNA binding, signal transduction associated 3 0.0465237
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0448435
ASPH aspartate beta-hydroxylase 0.0443735
LEF1 lymphoid enhancer-binding factor 1 0.0420828
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0414595
FNDC3B fibronectin type III domain containing 3B 0.0413172
VMP1 vacuole membrane protein 1 0.041206
TMEM178B transmembrane protein 178B 0.0409564
MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 0.0387136
EXOC4 exocyst complex component 4 0.0386411
PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 0.0379812
ZSWIM6 zinc finger, SWIM-type containing 6 0.0359294
VCL vinculin 0.0350388
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0345088
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 0.0344527
APLP2 amyloid beta (A4) precursor-like protein 2 0.0337209
SRPK2 SRSF protein kinase 2 0.0326679
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.0308019
RBM33 RNA binding motif protein 33 0.0303281
RNF145 ring finger protein 145 0.0287578
EPS8 epidermal growth factor receptor pathway substrate 8 0.0287447
OSBPL10 oxysterol binding protein-like 10 0.0286357
COG5 component of oligomeric golgi complex 5 0.0286092
SPRED1 sprouty-related, EVH1 domain containing 1 0.0279885
SMYD3 SET and MYND domain containing 3 0.0276684
ACTN1 actinin, alpha 1 0.0275116
PCDH7 protocadherin 7 0.0273993
SETBP1 SET binding protein 1 0.0265144
SLIT2 slit homolog 2 (Drosophila) 0.0256761
NFKBIZ nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta 0.0251726
USP53 ubiquitin specific peptidase 53 0.0251686
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.025087
PDLIM5 PDZ and LIM domain 5 0.0243432
CPED1 cadherin-like and PC-esterase domain containing 1 0.0242719
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0240093
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0239296
MCTP1 multiple C2 domains, transmembrane 1 0.0238885
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0233809
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0230798
CYTH3 cytohesin 3 0.0227993
CEMIP2 cell migration inducing hyaluronidase 2 0.0223764
PTPRM protein tyrosine phosphatase, receptor type, M 0.0221262
MED13L mediator complex subunit 13-like 0.0220255
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0219992
SSBP2 single-stranded DNA binding protein 2 0.0219846
QKI QKI, KH domain containing, RNA binding 0.0219699
HELZ helicase with zinc finger 0.0216382
CCNL1 cyclin L1 0.0211326
WDPCP WD repeat containing planar cell polarity effector 0.0210743
MT2A metallothionein 2A 0.0207853
FOSL1 FOS-like antigen 1 0.0206692
CTNND1 catenin (cadherin-associated protein), delta 1 0.020667
SEM1 SEM1 26S proteasome subunit 0.020505
UBE2H ubiquitin-conjugating enzyme E2H 0.020355
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.020078
GLS2 glutaminase 2 (liver, mitochondrial) 0.0198788
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0194639
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0192994
PARD3B par-3 family cell polarity regulator beta 0.0192548
AMOTL1 angiomotin like 1 0.0192356
MT1X metallothionein 1X 0.0190397
VPS13B vacuolar protein sorting 13 homolog B (yeast) 0.0189223
MSN moesin 0.0187493
PDE4D phosphodiesterase 4D, cAMP-specific 0.0186324
NOTCH2 notch 2 0.0181237
RYBP RING1 and YY1 binding protein 0.0180188
COPA coatomer protein complex, subunit alpha 0.0179064
BSG basigin (Ok blood group) 0.0179019
PHIP pleckstrin homology domain interacting protein 0.0178923
NAALADL2 N-acetylated alpha-linked acidic dipeptidase-like 2 0.0173222
ZFP36 ZFP36 ring finger protein 0.0172795
TNIK TRAF2 and NCK interacting kinase 0.0171574
EFCAB13 EF-hand calcium binding domain 13 0.0171262
AHR aryl hydrocarbon receptor 0.017109
ASCC3 activating signal cointegrator 1 complex subunit 3 0.0170872
STK24 serine/threonine kinase 24 0.0170819
OPHN1 oligophrenin 1 0.0168311
DPYD dihydropyrimidine dehydrogenase 0.0167709
PEAK1 pseudopodium-enriched atypical kinase 1 0.0167686
TBC1D5 TBC1 domain family, member 5 0.0167067
PTPRG protein tyrosine phosphatase, receptor type, G 0.016692
FAM3C family with sequence similarity 3, member C 0.0165229
ZNF292 zinc finger protein 292 0.0165034
SCLT1 sodium channel and clathrin linker 1 0.016497
ARID2 AT rich interactive domain 2 (ARID, RFX-like) 0.0164814
TOP1 topoisomerase (DNA) I 0.0163519
NUP58 nucleoporin 58 0.016228
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0162267
KDM4C lysine (K)-specific demethylase 4C 0.016096
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0160705
MPP2 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) 0.0160696

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.253381
FN1 fibronectin 1 -0.207339
VIM vimentin -0.203412
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.125064
VGF VGF nerve growth factor inducible -0.122366
IGFBP5 insulin-like growth factor binding protein 5 -0.113973
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.113428
PTTG1IP pituitary tumor-transforming 1 interacting protein -0.098235
ACTG1 actin gamma 1 -0.0924269
ENO1 enolase 1, (alpha) -0.0889374
HLA-B major histocompatibility complex, class I, B -0.0880302
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -0.0798587
TPT1 tumor protein, translationally-controlled 1 -0.0793946
PGK1 phosphoglycerate kinase 1 -0.0749929
PTMA prothymosin, alpha -0.0592584
RPL37A ribosomal protein L37a -0.0531617
GDF15 growth differentiation factor 15 -0.0483278
TIMP3 TIMP metallopeptidase inhibitor 3 -0.0482467
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 -0.0479214
PRKRIP1 PRKR interacting protein 1 (IL11 inducible) -0.0473147
KIRREL1 kirre like nephrin family adhesion molecule 1 -0.0467705
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0467431
BACE2 beta-site APP-cleaving enzyme 2 -0.0463165
S100A6 S100 calcium binding protein A6 -0.0451032
AKAP12 A kinase (PRKA) anchor protein 12 -0.0449979
SCFD2 sec1 family domain containing 2 -0.0438691
CALU calumenin -0.0430423
PLIN2 perilipin 2 -0.0427672
RPS3 ribosomal protein S3 -0.0421908
SLC25A36 solute carrier family 25 (pyrimidine nucleotide carrier), member 36 -0.041716
NAV2 neuron navigator 2 -0.0413225
SDC2 syndecan 2 -0.0399331
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 -0.0392476
OXR1 oxidation resistance 1 -0.0380317
RPLP1 ribosomal protein, large, P1 -0.0379757
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0379374
ESYT2 extended synaptotagmin-like protein 2 -0.037882
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0378724
RPS8 ribosomal protein S8 -0.0376454
CHSY1 chondroitin sulfate synthase 1 -0.0365549
FRMD4A FERM domain containing 4A -0.0358398
HLA-A major histocompatibility complex, class I, A -0.0357925
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 -0.0353493
CD44 CD44 molecule (Indian blood group) -0.0351015
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) -0.0346777
TM4SF1 transmembrane 4 L six family member 1 -0.0344666
TBC1D22A TBC1 domain family, member 22A -0.0342337
NDRG1 N-myc downstream regulated 1 -0.0341319
COL19A1 collagen, type XIX, alpha 1 -0.0336197
RPS6 ribosomal protein S6 -0.0335734
MMP14 matrix metallopeptidase 14 (membrane-inserted) -0.0333656
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0332278
ARHGAP5 Rho GTPase activating protein 5 -0.0331162
IER3 immediate early response 3 -0.0327779
RPS27A ribosomal protein S27a -0.0324134
TMEM123 transmembrane protein 123 -0.0323234
SAMD4A sterile alpha motif domain containing 4A -0.0321179
TMSB10 thymosin beta 10 -0.0321008
CTSD cathepsin D -0.0315392
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0314362
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0312114
ZMYND8 zinc finger, MYND-type containing 8 -0.0311551
RPL35A ribosomal protein L35a -0.0310787
ITGA3 integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) -0.0305638
RPLP2 ribosomal protein, large, P2 -0.0304721
NPC1 Niemann-Pick disease, type C1 -0.0303306
GOLGA4 golgin A4 -0.0303171
BAIAP2L1 BAI1-associated protein 2-like 1 -0.0303019
TNNC1 troponin C type 1 (slow) -0.0302807
CD63 CD63 molecule -0.0300438
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma -0.0299565
PARVB parvin, beta -0.0296541
RPS29 ribosomal protein S29 -0.0296515
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) -0.0294417
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) -0.0293181
OGA O-GlcNAcase -0.0292432
RPS12 ribosomal protein S12 -0.0292338
CANX calnexin -0.0291667
PDE10A phosphodiesterase 10A -0.0286018
CLMN calmin (calponin-like, transmembrane) -0.0283558
HLA-E major histocompatibility complex, class I, E -0.0281628
RPL26 ribosomal protein L26 -0.0281502
UBE3C ubiquitin protein ligase E3C -0.027858
KPNB1 karyopherin (importin) beta 1 -0.0278038
GSN gelsolin -0.0275682
RRBP1 ribosome binding protein 1 -0.0274182
CAVIN1 caveolae associated protein 1 -0.0272935
CCND1 cyclin D1 -0.0271455
HILPDA hypoxia inducible lipid droplet-associated -0.027132
PLOD3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 -0.027098
GNAQ guanine nucleotide binding protein (G protein), q polypeptide -0.0269675
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0268614
LPP LIM domain containing preferred translocation partner in lipoma -0.0266633
NRCAM neuronal cell adhesion molecule -0.0265022
IRF2BP2 interferon regulatory factor 2 binding protein 2 -0.0264423
RUNX1 runt-related transcription factor 1 -0.0264085
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0263575
JMJD1C jumonji domain containing 1C -0.0262397
FTL ferritin, light polypeptide -0.026173
ADAM19 ADAM metallopeptidase domain 19 -0.0260293