APTO-253_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description APTO-253 perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the APTO-253_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
CD44 CD44 molecule (Indian blood group) 0.057214
MACF1 microtubule-actin crosslinking factor 1 0.0552393
DST dystonin 0.047771
MBNL1 muscleblind-like splicing regulator 1 0.0467758
MBNL2 muscleblind-like splicing regulator 2 0.0461881
DSCAM Down syndrome cell adhesion molecule 0.044119
SLC38A2 solute carrier family 38, member 2 0.0420705
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0416104
FNDC3B fibronectin type III domain containing 3B 0.0364386
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0325882
SMAD3 SMAD family member 3 0.0322606
NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase 0.0316005
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0314197
SVIL supervillin 0.0304515
TXNRD1 thioredoxin reductase 1 0.0272351
CWF19L2 CWF19-like 2, cell cycle control (S. pombe) 0.0267237
ZNF292 zinc finger protein 292 0.0261328
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0248834
ERC2 ELKS/RAB6-interacting/CAST family member 2 0.0246431
BICD1 bicaudal D homolog 1 (Drosophila) 0.0245886
ROCK2 Rho-associated, coiled-coil containing protein kinase 2 0.0240672
ATXN1 ataxin 1 0.0238719
RASAL2 RAS protein activator like 2 0.0237854
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 0.02323
RICTOR RPTOR independent companion of MTOR, complex 2 0.0229618
FAM3C family with sequence similarity 3, member C 0.0224317
RTN4 reticulon 4 0.0224113
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0222072
RAD50 RAD50 homolog (S. cerevisiae) 0.0218701
TXNIP thioredoxin interacting protein 0.0218264
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0216524
KIF5B kinesin family member 5B 0.0216026
ITCH itchy E3 ubiquitin protein ligase 0.0215002
PRR16 proline rich 16 0.0208831
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0207342
SET SET nuclear proto-oncogene 0.0206063
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.0199123
PHF3 PHD finger protein 3 0.0198426
JMJD1C jumonji domain containing 1C 0.0195028
FER fer (fps/fes related) tyrosine kinase 0.0193355
EFNA5 ephrin-A5 0.0192823
SLC35F3 solute carrier family 35, member F3 0.0189031
RDX radixin 0.0188967
RBMS1 RNA binding motif, single stranded interacting protein 1 0.0187727
PPIG peptidylprolyl isomerase G (cyclophilin G) 0.0187148
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.0185816
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0185626
ARHGAP21 Rho GTPase activating protein 21 0.0184581
SLC2A13 solute carrier family 2 (facilitated glucose transporter), member 13 0.0179887
RSF1 remodeling and spacing factor 1 0.0179694
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0179004
AKAP9 A kinase (PRKA) anchor protein 9 0.0171447
MAP3K5 mitogen-activated protein kinase kinase kinase 5 0.0170634
EHBP1 EH domain binding protein 1 0.0167101
AK1 adenylate kinase 1 0.0166325
YY1 YY1 transcription factor 0.0165925
DYNC2I1 dynein 2 intermediate chain 1 0.0165303
GSK3B glycogen synthase kinase 3 beta 0.016425
MYBL1 v-myb avian myeloblastosis viral oncogene homolog-like 1 0.0163418
GLCCI1 glucocorticoid induced 1 0.0162752
MYOF myoferlin 0.0162491
KLF12 Kruppel-like factor 12 0.0161373
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0157076
DIP2B DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.0156891
PPHLN1 periphilin 1 0.0156665
BCAR3 breast cancer anti-estrogen resistance 3 0.0155711
IGF1R insulin-like growth factor 1 receptor 0.0155699
GPBP1 GC-rich promoter binding protein 1 0.015512
ELL2 elongation factor, RNA polymerase II, 2 0.0155009
PDIA4 protein disulfide isomerase family A, member 4 0.0154916
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0152987
THBS1 thrombospondin 1 0.0152872
EPAS1 endothelial PAS domain protein 1 0.0152519
TTC3 tetratricopeptide repeat domain 3 0.0152448
TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 0.0150511
ANKRD28 ankyrin repeat domain 28 0.015025
UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) 0.0149107
FLNB filamin B, beta 0.0148208
WWOX WW domain containing oxidoreductase 0.0147119
SCAF11 SR-related CTD-associated factor 11 0.0146124
TMF1 TATA element modulatory factor 1 0.014568
PSMD1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 0.014527
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.014454
LPP LIM domain containing preferred translocation partner in lipoma 0.0144426
BAZ2B bromodomain adjacent to zinc finger domain, 2B 0.0144186
CCDC93 coiled-coil domain containing 93 0.0144147
MIB1 mindbomb E3 ubiquitin protein ligase 1 0.0142843
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.014211
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 0.0141421
ASXL1 additional sex combs like transcriptional regulator 1 0.0140219
TNIP1 TNFAIP3 interacting protein 1 0.013987
ZZZ3 zinc finger, ZZ-type containing 3 0.0138516
USP8 ubiquitin specific peptidase 8 0.0137918
CFH complement factor H 0.0137577
C1D C1D nuclear receptor corepressor 0.0137349
RORA RAR-related orphan receptor A 0.0136844
KIAA0232 KIAA0232 0.0136273
RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2 0.0135752
LIPH lipase, member H 0.0134021
CAMK2D calcium/calmodulin-dependent protein kinase II delta 0.0132802

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.100366
TPT1 tumor protein, translationally-controlled 1 -0.0901838
PTMA prothymosin, alpha -0.0894548
TMSB10 thymosin beta 10 -0.0726481
IGFBP3 insulin-like growth factor binding protein 3 -0.0644105
RPLP1 ribosomal protein, large, P1 -0.0498114
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.0487206
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0479684
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.047407
RPL31 ribosomal protein L31 -0.0446313
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0441025
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0425194
RPL37A ribosomal protein L37a -0.0411949
GNAS GNAS complex locus -0.0411885
RPL35A ribosomal protein L35a -0.0388634
SIPA1L3 signal-induced proliferation-associated 1 like 3 -0.0386776
RPL23 ribosomal protein L23 -0.0378539
ANKRD11 ankyrin repeat domain 11 -0.0357825
IER3 immediate early response 3 -0.0352076
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0344495
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0343029
MT2A metallothionein 2A -0.0338988
LDHA lactate dehydrogenase A -0.0338171
TM4SF1 transmembrane 4 L six family member 1 -0.0333293
RPL37 ribosomal protein L37 -0.0328798
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0328661
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0325254
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0316295
HMGA1 high mobility group AT-hook 1 -0.0315199
RPS23 ribosomal protein S23 -0.0312224
RPS8 ribosomal protein S8 -0.0310692
OASL 2'-5'-oligoadenylate synthetase-like -0.0310264
RPS6 ribosomal protein S6 -0.0309176
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.030678
RPL19 ribosomal protein L19 -0.0306343
RAI14 retinoic acid induced 14 -0.0298847
CHSY1 chondroitin sulfate synthase 1 -0.0286133
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 -0.0285896
ANGPTL4 angiopoietin-like 4 -0.0285255
HLA-B major histocompatibility complex, class I, B -0.0284384
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0280862
MCTP1 multiple C2 domains, transmembrane 1 -0.0280134
TAOK3 TAO kinase 3 -0.0274851
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0264661
SLC4A7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 -0.0263461
NT5E 5'-nucleotidase, ecto (CD73) -0.0259022
MCL1 myeloid cell leukemia 1 -0.0257029
FTH1 ferritin, heavy polypeptide 1 -0.0255547
APLP2 amyloid beta (A4) precursor-like protein 2 -0.0254611
DLG1 discs, large homolog 1 (Drosophila) -0.0254418
RPS17 ribosomal protein S17 -0.0253979
RAB1A RAB1A, member RAS oncogene family -0.0253292
SETD5 SET domain containing 5 -0.0253023
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0250759
EGR1 early growth response 1 -0.024931
RPS25 ribosomal protein S25 -0.0248113
NIBAN2 niban apoptosis regulator 2 -0.0247582
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0246939
NUP58 nucleoporin 58 -0.0243632
RPS21 ribosomal protein S21 -0.0243446
RPL36 ribosomal protein L36 -0.024237
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0235803
AOPEP aminopeptidase O (putative) -0.0234356
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa -0.0230784
BIRC3 baculoviral IAP repeat containing 3 -0.0229753
S100A9 S100 calcium binding protein A9 -0.0227092
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0226521
RPS3 ribosomal protein S3 -0.022626
BTN3A3 butyrophilin, subfamily 3, member A3 -0.022537
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0224513
RCOR1 REST corepressor 1 -0.0223567
H3-3B H3.3 histone B -0.0220982
SCFD1 sec1 family domain containing 1 -0.0220979
RPS20 ribosomal protein S20 -0.0217473
HLA-A major histocompatibility complex, class I, A -0.0216361
SRP54 signal recognition particle 54kDa -0.0214541
CUL3 cullin 3 -0.0213864
GDI2 GDP dissociation inhibitor 2 -0.0213635
ENO2 enolase 2 (gamma, neuronal) -0.0211587
ZBTB10 zinc finger and BTB domain containing 10 -0.0211552
TRAF3 TNF receptor-associated factor 3 -0.0211523
CDH4 cadherin 4, type 1, R-cadherin (retinal) -0.0211201
SRPK2 SRSF protein kinase 2 -0.0210276
ATF4 activating transcription factor 4 -0.0209996
RPL27A ribosomal protein L27a -0.0209922
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) -0.0209541
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0208598
RAB7A RAB7A, member RAS oncogene family -0.0208303
GBE1 glucan (1,4-alpha-), branching enzyme 1 -0.0206501
RPL38 ribosomal protein L38 -0.0205607
ERN1 endoplasmic reticulum to nucleus signaling 1 -0.0204693
PTK2 protein tyrosine kinase 2 -0.0204674
BTBD9 BTB (POZ) domain containing 9 -0.0201097
RPL15 ribosomal protein L15 -0.0198026
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0193071
XPO1 exportin 1 -0.0191989
RPS15 ribosomal protein S15 -0.0191158
RPS13 ribosomal protein S13 -0.0190778
SAFB scaffold attachment factor B -0.0190522
GFPT1 glutamine--fructose-6-phosphate transaminase 1 -0.0188609