Alpelisib_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Alpelisib perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Alpelisib_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.139365
FNDC3B fibronectin type III domain containing 3B 0.133393
LDHA lactate dehydrogenase A 0.127482
SQSTM1 sequestosome 1 0.107768
PRKCA protein kinase C, alpha 0.0998644
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0888321
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.085776
DST dystonin 0.0840141
SMAD3 SMAD family member 3 0.0803167
SVIL supervillin 0.0789412
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0731814
ANXA2 annexin A2 0.0719658
CD44 CD44 molecule (Indian blood group) 0.0714117
ATXN1 ataxin 1 0.0650926
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0631771
AHNAK AHNAK nucleoprotein 0.0614658
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0605459
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0592476
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0580367
APLP2 amyloid beta (A4) precursor-like protein 2 0.0577081
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0576955
PMEPA1 prostate transmembrane protein, androgen induced 1 0.0561588
ZSWIM6 zinc finger, SWIM-type containing 6 0.0551053
PKM pyruvate kinase, muscle 0.0537643
SH3KBP1 SH3-domain kinase binding protein 1 0.0535275
TRIO trio Rho guanine nucleotide exchange factor 0.0523747
UACA uveal autoantigen with coiled-coil domains and ankyrin repeats 0.0515916
ENO1 enolase 1, (alpha) 0.0509597
CEMIP2 cell migration inducing hyaluronidase 2 0.0502759
NT5E 5'-nucleotidase, ecto (CD73) 0.0495324
PTK2 protein tyrosine kinase 2 0.0483863
MAP1B microtubule-associated protein 1B 0.0479864
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.047698
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.047231
CALR calreticulin 0.0464896
TPI1 triosephosphate isomerase 1 0.0460223
N4BP2L2 NEDD4 binding protein 2-like 2 0.0452633
ANXA1 annexin A1 0.0436568
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0430947
INTS6 integrator complex subunit 6 0.0430054
MYOF myoferlin 0.0425192
CANX calnexin 0.0422685
SEPTIN9 septin 9 0.0408808
SLC38A2 solute carrier family 38, member 2 0.0403644
RUNX1 runt-related transcription factor 1 0.0400044
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0394237
GLS2 glutaminase 2 (liver, mitochondrial) 0.0394151
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) 0.0393694
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0382432
MACF1 microtubule-actin crosslinking factor 1 0.0381789
FBXL7 F-box and leucine-rich repeat protein 7 0.0377243
PRSS23 protease, serine, 23 0.0377201
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.0376933
MBNL2 muscleblind-like splicing regulator 2 0.0367437
DSCAM Down syndrome cell adhesion molecule 0.0362793
ITGA6 integrin, alpha 6 0.0361341
AKAP13 A kinase (PRKA) anchor protein 13 0.0361249
PCBP2 poly(rC) binding protein 2 0.0360596
FTH1 ferritin, heavy polypeptide 1 0.0354132
ANO6 anoctamin 6 0.0352651
MYH9 myosin, heavy chain 9, non-muscle 0.034629
ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.034628
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.0345992
ABR active BCR-related 0.0339787
EMP1 epithelial membrane protein 1 0.0338264
LOC102724023 ES1 protein homolog, mitochondrial 0.033558
IRAK2 interleukin-1 receptor-associated kinase 2 0.0331523
AKAP9 A kinase (PRKA) anchor protein 9 0.0328867
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0323999
ANGPTL4 angiopoietin-like 4 0.0315966
HSPA8 heat shock 70kDa protein 8 0.0315322
EZR ezrin 0.031457
WWOX WW domain containing oxidoreductase 0.0314138
SPTBN1 spectrin, beta, non-erythrocytic 1 0.031303
FMNL2 formin-like 2 0.0311052
SKIL SKI-like proto-oncogene 0.0310113
CEP250 centrosomal protein 250kDa 0.0308986
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.030884
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0308065
USO1 USO1 vesicle transport factor 0.0306171
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.030578
BICD1 bicaudal D homolog 1 (Drosophila) 0.0305315
ADM adrenomedullin 0.030495
RAI14 retinoic acid induced 14 0.0298791
PLEC plectin 0.029829
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0296927
FER fer (fps/fes related) tyrosine kinase 0.0293994
UTRN utrophin 0.0293421
SCAPER S-phase cyclin A-associated protein in the ER 0.0292393
RAD51B RAD51 paralog B 0.0292055
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0287082
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0284021
BRD2 bromodomain containing 2 0.0282658
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 0.0280647
HLA-A major histocompatibility complex, class I, A 0.0276198
NAV2 neuron navigator 2 0.0272397
RHOBTB3 Rho-related BTB domain containing 3 0.0271929
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0269404
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0267806
WSB1 WD repeat and SOCS box containing 1 0.0266844

decreased expression

Symbol Name Standardized Value
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0831631
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.076845
TMSB10 thymosin beta 10 -0.0717274
GOLGA4 golgin A4 -0.0676468
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0580041
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0533003
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0508404
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0477105
ELL2 elongation factor, RNA polymerase II, 2 -0.047635
RPL4 ribosomal protein L4 -0.0467733
TPT1 tumor protein, translationally-controlled 1 -0.0464107
SMC5 structural maintenance of chromosomes 5 -0.0427983
NDRG1 N-myc downstream regulated 1 -0.0426976
DIAPH3 diaphanous-related formin 3 -0.0423316
ZNF292 zinc finger protein 292 -0.0415877
TMEM263 transmembrane protein 263 -0.0394045
THSD4 thrombospondin, type I, domain containing 4 -0.0388776
ACTG1 actin gamma 1 -0.0386784
TM4SF1 transmembrane 4 L six family member 1 -0.0385087
NKTR natural killer cell triggering receptor -0.0384568
OSMR oncostatin M receptor -0.0383461
RBM39 RNA binding motif protein 39 -0.0376592
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 -0.037552
MCTP1 multiple C2 domains, transmembrane 1 -0.0365635
RPLP2 ribosomal protein, large, P2 -0.0359493
DLG1 discs, large homolog 1 (Drosophila) -0.0357438
ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase -0.0354186
KIAA1958 KIAA1958 -0.0352132
TPX2 TPX2, microtubule-associated -0.0347676
RPS6 ribosomal protein S6 -0.0345917
USP34 ubiquitin specific peptidase 34 -0.0343462
RPL35A ribosomal protein L35a -0.0327384
RPL32 ribosomal protein L32 -0.0326131
CSDE1 cold shock domain containing E1, RNA-binding -0.0323328
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0323088
SGO2 shugoshin 2 -0.0322081
ASXL1 additional sex combs like transcriptional regulator 1 -0.0318634
NCAPD2 non-SMC condensin I complex, subunit D2 -0.0318183
RPL37A ribosomal protein L37a -0.031785
ATM ATM serine/threonine kinase -0.0316712
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0316535
GPC6 glypican 6 -0.0311434
SEC24A SEC24 family member A -0.0308473
PIAS1 protein inhibitor of activated STAT, 1 -0.030644
CEP295 centrosomal protein 295kDa -0.0306278
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0304573
BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide -0.0300114
COG5 component of oligomeric golgi complex 5 -0.0296496
NUP214 nucleoporin 214kDa -0.0292888
UBAC2 UBA domain containing 2 -0.0292146
TAS2R14 taste receptor, type 2, member 14 -0.0292036
UQCRB ubiquinol-cytochrome c reductase binding protein -0.0291753
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) -0.0289906
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0288728
GOLGA3 golgin A3 -0.0288613
PSMD5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 -0.0284833
RBM33 RNA binding motif protein 33 -0.0283971
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0282244
MED13L mediator complex subunit 13-like -0.0280926
EXOC6B exocyst complex component 6B -0.0276784
CKAP2 cytoskeleton associated protein 2 -0.0273962
NALCN sodium leak channel, non selective -0.0273961
PPFIA1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 -0.0273806
MNAT1 MNAT CDK-activating kinase assembly factor 1 -0.0270763
ANO10 anoctamin 10 -0.027032
BASP1 brain abundant, membrane attached signal protein 1 -0.026816
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein -0.0267634
HP1BP3 heterochromatin protein 1, binding protein 3 -0.0266136
EEF2 eukaryotic translation elongation factor 2 -0.0264227
CD2AP CD2-associated protein -0.0263939
CEP95 centrosomal protein 95kDa -0.0259609
RPS25 ribosomal protein S25 -0.0258981
PUM2 pumilio RNA-binding family member 2 -0.0258349
HMMR hyaluronan-mediated motility receptor (RHAMM) -0.0258194
PHIP pleckstrin homology domain interacting protein -0.0258078
CAMKMT calmodulin-lysine N-methyltransferase -0.0256863
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0255931
NCEH1 neutral cholesterol ester hydrolase 1 -0.0254851
CFDP1 craniofacial development protein 1 -0.0254719
CALU calumenin -0.0253607
RRBP1 ribosome binding protein 1 -0.0253325
HELZ helicase with zinc finger -0.0252394
ARF1 ADP-ribosylation factor 1 -0.0251123
SCAF8 SR-related CTD-associated factor 8 -0.0250913
RFX7 regulatory factor X, 7 -0.0250764
YBX3 Y box binding protein 3 -0.0249332
TUT4 terminal uridylyl transferase 4 -0.0248942
MKI67 marker of proliferation Ki-67 -0.0248531
SKIC3 SKI3 subunit of superkiller complex -0.0248485
ARHGAP5 Rho GTPase activating protein 5 -0.0247882
KIAA1328 KIAA1328 -0.0245279
PHF14 PHD finger protein 14 -0.0244953
EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa -0.0243942
EPS8 epidermal growth factor receptor pathway substrate 8 -0.0243876
COPB1 coatomer protein complex, subunit beta 1 -0.0243525
PCNX4 pecanex 4 -0.0243154
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0242667
TTK TTK protein kinase -0.0242472
NEMF nuclear export mediator factor -0.0241074
H3-3B H3.3 histone B -0.0240126