Amsacrine_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Amsacrine perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Amsacrine_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.141673
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 0.0746075
OSMR oncostatin M receptor 0.0611075
THSD4 thrombospondin, type I, domain containing 4 0.057084
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.0512615
AFF3 AF4/FMR2 family, member 3 0.0466218
PDE10A phosphodiesterase 10A 0.0391764
TAS2R14 taste receptor, type 2, member 14 0.0371911
ERRFI1 ERBB receptor feedback inhibitor 1 0.0361993
PARP14 poly (ADP-ribose) polymerase family, member 14 0.0358476
SENP6 SUMO1/sentrin specific peptidase 6 0.0354633
FTH1 ferritin, heavy polypeptide 1 0.0354406
PRKCE protein kinase C, epsilon 0.0325383
HMGA2 high mobility group AT-hook 2 0.0324635
RNF213 ring finger protein 213 0.0315298
DENND5B DENN/MADD domain containing 5B 0.0312531
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.03049
CUX1 cut-like homeobox 1 0.0298025
H1-0 H1.0 linker histone 0.0297945
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0297877
R3HDM2 R3H domain containing 2 0.0287467
PYGL phosphorylase, glycogen, liver 0.0287147
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 0.0277269
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 0.0271112
KRT18 keratin 18, type I 0.0269718
PHLDB2 pleckstrin homology-like domain, family B, member 2 0.0266012
SHANK2 SH3 and multiple ankyrin repeat domains 2 0.0257331
DSPP dentin sialophosphoprotein 0.0255308
ZBTB1 zinc finger and BTB domain containing 1 0.0254593
PATJ PATJ crumbs cell polarity complex component 0.0251514
MKI67 marker of proliferation Ki-67 0.0249073
EGFR epidermal growth factor receptor 0.0238602
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0236463
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 0.0235472
EHBP1 EH domain binding protein 1 0.0233703
IGF2 insulin-like growth factor 2 0.0233472
DNAH14 dynein, axonemal, heavy chain 14 0.0228821
IFI6 interferon, alpha-inducible protein 6 0.0228369
LOXL2 lysyl oxidase-like 2 0.0223351
KCNMA1 potassium channel, calcium activated large conductance subfamily M alpha, member 1 0.0222802
DFFA DNA fragmentation factor, 45kDa, alpha polypeptide 0.0219727
MAP3K20 mitogen-activated protein kinase kinase kinase 20 0.0217755
FMNL2 formin-like 2 0.0217407
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0216463
PLEC plectin 0.0211357
MACF1 microtubule-actin crosslinking factor 1 0.0209059
HLA-C major histocompatibility complex, class I, C 0.0207087
HLA-E major histocompatibility complex, class I, E 0.0197777
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 0.0194236
MMP12 matrix metallopeptidase 12 0.0193834
NCOA7 nuclear receptor coactivator 7 0.0193414
ETV6 ets variant 6 0.0188914
FAM168A family with sequence similarity 168, member A 0.0188012
SHC1 SHC (Src homology 2 domain containing) transforming protein 1 0.0186851
RABGAP1L RAB GTPase activating protein 1-like 0.0186415
SUPT3H suppressor of Ty 3 homolog (S. cerevisiae) 0.0184976
STAT1 signal transducer and activator of transcription 1, 91kDa 0.0184617
PMEPA1 prostate transmembrane protein, androgen induced 1 0.0183759
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0181363
PTK2 protein tyrosine kinase 2 0.0177294
SIK3 SIK family kinase 3 0.0176327
STAT3 signal transducer and activator of transcription 3 (acute-phase response factor) 0.0175624
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0175493
PNPT1 polyribonucleotide nucleotidyltransferase 1 0.0173909
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.0173396
RYR3 ryanodine receptor 3 0.0173227
ATG7 autophagy related 7 0.0168576
CDCP1 CUB domain containing protein 1 0.0167349
YARS1 tyrosyl-tRNA synthetase 1 0.0162808
NPAS2 neuronal PAS domain protein 2 0.0162133
TBC1D22A TBC1 domain family, member 22A 0.0161923
BMAL2 basic helix-loop-helix ARNT like 2 0.0161597
SCMH1 sex comb on midleg homolog 1 (Drosophila) 0.0160735
AGO2 argonaute RISC catalytic component 2 0.0160659
BRCA1 breast cancer 1, early onset 0.0160229
FCHSD2 FCH and double SH3 domains 2 0.0159403
PRRC2B proline-rich coiled-coil 2B 0.015923
DOCK1 dedicator of cytokinesis 1 0.0158342
EXOC4 exocyst complex component 4 0.0158337
TPM2 tropomyosin 2 (beta) 0.0157968
DHFR dihydrofolate reductase 0.015614
GRAMD1B GRAM domain containing 1B 0.0155431
WDR70 WD repeat domain 70 0.015542
DTNB dystrobrevin, beta 0.0154457
WWTR1 WW domain containing transcription regulator 1 0.01541
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 0.0153187
PHF21A PHD finger protein 21A 0.0152743
FAM13A family with sequence similarity 13, member A 0.0152274
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0150832
STC1 stanniocalcin 1 0.0150382
RPS6 ribosomal protein S6 0.0150247
MEMO1 mediator of cell motility 1 0.014987
SAMHD1 SAM domain and HD domain 1 0.0149857
ATP9B ATPase, class II, type 9B 0.0147377
CEP250 centrosomal protein 250kDa 0.014611
AOPEP aminopeptidase O (putative) 0.0146101
DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 0.0145801
KMT5B lysine methyltransferase 5B 0.0142911
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.0142887
ATP13A3 ATPase type 13A3 0.0142502

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.246659
TFPI2 tissue factor pathway inhibitor 2 -0.190268
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 -0.16238
UBC ubiquitin C -0.14528
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.110685
TMSB10 thymosin beta 10 -0.10906
VIM vimentin -0.10374
PTMA prothymosin, alpha -0.0855727
TXNRD1 thioredoxin reductase 1 -0.0854332
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0852845
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0837208
PCBP2 poly(rC) binding protein 2 -0.0786832
RPS27A ribosomal protein S27a -0.0735408
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa -0.0665271
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 -0.0650106
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0618904
ENO1 enolase 1, (alpha) -0.0603291
EIF4A1 eukaryotic translation initiation factor 4A1 -0.056777
RPL23 ribosomal protein L23 -0.0566111
CALM2 calmodulin 2 (phosphorylase kinase, delta) -0.0521552
NAP1L1 nucleosome assembly protein 1-like 1 -0.0498916
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0490783
MYL12B myosin, light chain 12B, regulatory -0.0475737
KTN1 kinectin 1 (kinesin receptor) -0.0474115
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0433393
NIPBL Nipped-B homolog (Drosophila) -0.0433338
PGK1 phosphoglycerate kinase 1 -0.0386522
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0385602
RPL5 ribosomal protein L5 -0.0373679
KDM3A lysine (K)-specific demethylase 3A -0.0369351
ACTG1 actin gamma 1 -0.0356451
MARCHF4 membrane associated ring-CH-type finger 4 -0.0353583
CSDE1 cold shock domain containing E1, RNA-binding -0.0345068
RPL37A ribosomal protein L37a -0.0343948
PKM pyruvate kinase, muscle -0.033795
CCT4 chaperonin containing TCP1, subunit 4 (delta) -0.0335715
RPS8 ribosomal protein S8 -0.0326839
TPI1 triosephosphate isomerase 1 -0.0318574
RPS3 ribosomal protein S3 -0.0313982
SEPTIN7 septin 7 -0.0304242
RBM39 RNA binding motif protein 39 -0.0300259
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0299869
USP34 ubiquitin specific peptidase 34 -0.0298078
LDHB lactate dehydrogenase B -0.0296882
PRRC2C proline-rich coiled-coil 2C -0.0285377
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0280777
SPDYA speedy/RINGO cell cycle regulator family member A -0.0273974
RACK1 receptor for activated C kinase 1 -0.0271876
ATP5F1B ATP synthase F1 subunit beta -0.0269965
POTEF POTE ankyrin domain family, member F -0.0269412
OGA O-GlcNAcase -0.0268101
PLCB4 phospholipase C, beta 4 -0.0264614
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.026423
IPO7 importin 7 -0.026321
MCL1 myeloid cell leukemia 1 -0.0262379
LDHA lactate dehydrogenase A -0.0262287
RTN4 reticulon 4 -0.026025
WSB1 WD repeat and SOCS box containing 1 -0.0259413
TPX2 TPX2, microtubule-associated -0.0256717
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0254321
CALU calumenin -0.025387
XPO1 exportin 1 -0.0251562
TRIO trio Rho guanine nucleotide exchange factor -0.0248234
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0247294
PTGES3 prostaglandin E synthase 3 (cytosolic) -0.0247183
CSNK1A1 casein kinase 1, alpha 1 -0.0245288
EIF5B eukaryotic translation initiation factor 5B -0.0242849
PDIA6 protein disulfide isomerase family A, member 6 -0.0240958
RPL31 ribosomal protein L31 -0.0239323
PPP1R12A protein phosphatase 1, regulatory subunit 12A -0.0237155
RBM25 RNA binding motif protein 25 -0.0236527
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0231917
XRCC5 X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) -0.0231669
VDAC1 voltage-dependent anion channel 1 -0.0229817
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon -0.0228988
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 -0.0228179
SFPQ splicing factor proline/glutamine-rich -0.0225327
TNPO1 transportin 1 -0.0223846
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 -0.0221666
RPS29 ribosomal protein S29 -0.0221648
BRD2 bromodomain containing 2 -0.0221104
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0219876
YBX1 Y box binding protein 1 -0.021953
WDR45B WD repeat domain 45B -0.021842
MATR3 matrin 3 -0.0217933
FTL ferritin, light polypeptide -0.021285
GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 -0.0212649
LRPPRC leucine-rich pentatricopeptide repeat containing -0.0211311
TRIP12 thyroid hormone receptor interactor 12 -0.0210989
SPAG9 sperm associated antigen 9 -0.0207781
RPL9 ribosomal protein L9 -0.0206857
ZFAND3 zinc finger, AN1-type domain 3 -0.0206593
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) -0.0205313
RPS12 ribosomal protein S12 -0.0201374
PFN1 profilin 1 -0.0200785
EIF3A eukaryotic translation initiation factor 3, subunit A -0.0199055
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0198412
GOLGA4 golgin A4 -0.0196726
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.0196462
TUBA1B tubulin, alpha 1b -0.0196298