Amsacrine_NCI-H2347 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Amsacrine perturbation in NCI-H2347 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Amsacrine_NCI-H2347 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
FTH1 ferritin, heavy polypeptide 1 0.197824
FN1 fibronectin 1 0.155872
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.098852
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0862051
PLEC plectin 0.0829999
EEF2 eukaryotic translation elongation factor 2 0.0823143
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0811423
MYH9 myosin, heavy chain 9, non-muscle 0.0697111
CANX calnexin 0.06889
IGFBP3 insulin-like growth factor binding protein 3 0.062417
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0459527
HLA-E major histocompatibility complex, class I, E 0.0434116
BZW1 basic leucine zipper and W2 domains 1 0.0401956
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.039073
PDIA4 protein disulfide isomerase family A, member 4 0.0387184
PLAU plasminogen activator, urokinase 0.0382209
SOD2 superoxide dismutase 2, mitochondrial 0.0381529
TMSB4X thymosin beta 4, X-linked 0.0357909
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0347782
F11R F11 receptor 0.0341183
KRT18 keratin 18, type I 0.0340838
RPL4 ribosomal protein L4 0.0340636
SFTPA2 surfactant protein A2 0.0335897
HLA-A major histocompatibility complex, class I, A 0.0331585
RPS12 ribosomal protein S12 0.0328395
VEGFA vascular endothelial growth factor A 0.0313252
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0312165
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0294819
TPM3 tropomyosin 3 0.0293078
AHNAK AHNAK nucleoprotein 0.0292922
ERRFI1 ERBB receptor feedback inhibitor 1 0.0290348
LAMC2 laminin, gamma 2 0.0290253
CALR calreticulin 0.0289614
RPS6 ribosomal protein S6 0.0288439
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0273108
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0267237
BHLHE40 basic helix-loop-helix family, member e40 0.0262418
FAM13A family with sequence similarity 13, member A 0.0261037
CTSS cathepsin S 0.0257466
RPL3 ribosomal protein L3 0.0256851
CSDE1 cold shock domain containing E1, RNA-binding 0.0255799
RPS2 ribosomal protein S2 0.02554
YBX1 Y box binding protein 1 0.025382
AHNAK2 AHNAK nucleoprotein 2 0.0252195
CD109 CD109 molecule 0.024648
ARID4B AT rich interactive domain 4B (RBP1-like) 0.0243091
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0240486
RPS17 ribosomal protein S17 0.0232889
CXCL2 chemokine (C-X-C motif) ligand 2 0.0231692
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0227729
SQSTM1 sequestosome 1 0.0226816
KDM3A lysine (K)-specific demethylase 3A 0.0219336
ELL2 elongation factor, RNA polymerase II, 2 0.0212828
EIF4B eukaryotic translation initiation factor 4B 0.0211991
G0S2 G0/G1 switch 2 0.0211556
H1-0 H1.0 linker histone 0.0211513
CERT1 ceramide transporter 1 0.0211216
CXCL8 chemokine (C-X-C motif) ligand 8 0.020487
IFIT3 interferon-induced protein with tetratricopeptide repeats 3 0.0202864
EIF4G1 eukaryotic translation initiation factor 4 gamma, 1 0.0202149
MCL1 myeloid cell leukemia 1 0.0200371
CFLAR CASP8 and FADD-like apoptosis regulator 0.020007
EIF3A eukaryotic translation initiation factor 3, subunit A 0.0196953
MSI2 musashi RNA-binding protein 2 0.0196508
DSPP dentin sialophosphoprotein 0.019574
EEF1G eukaryotic translation elongation factor 1 gamma 0.0194508
RPL14 ribosomal protein L14 0.0192279
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0191208
RPS27A ribosomal protein S27a 0.0190389
DSG2 desmoglein 2 0.018968
RPS18 ribosomal protein S18 0.0185629
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0184522
CRABP2 cellular retinoic acid binding protein 2 0.0183987
UPP1 uridine phosphorylase 1 0.0178908
EIF4A2 eukaryotic translation initiation factor 4A2 0.0178407
ANXA1 annexin A1 0.0176287
CCND1 cyclin D1 0.0175882
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 0.017511
PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 0.0173773
COL6A1 collagen, type VI, alpha 1 0.017225
IRF6 interferon regulatory factor 6 0.0171194
PPP1R13B protein phosphatase 1, regulatory subunit 13B 0.0170625
DHFR dihydrofolate reductase 0.0170492
YEATS2 YEATS domain containing 2 0.0170228
TSC22D2 TSC22 domain family, member 2 0.0169927
DYRK1A dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A 0.0167265
BIRC3 baculoviral IAP repeat containing 3 0.0166417
HNRNPK heterogeneous nuclear ribonucleoprotein K 0.0165633
MX1 MX dynamin-like GTPase 1 0.0164835
PELI1 pellino E3 ubiquitin protein ligase 1 0.0161575
SET SET nuclear proto-oncogene 0.0160055
APP amyloid beta (A4) precursor protein 0.0159042
UBA6 ubiquitin-like modifier activating enzyme 6 0.0159013
ZFR zinc finger RNA binding protein 0.01585
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0158421
OGFRL1 opioid growth factor receptor-like 1 0.015829
SENP6 SUMO1/sentrin specific peptidase 6 0.0157286
TKT transketolase 0.0156774
PAPOLA poly(A) polymerase alpha 0.0156443
RPL12 ribosomal protein L12 0.0155673

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.165695
FTL ferritin, light polypeptide -0.157133
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.152012
NDRG1 N-myc downstream regulated 1 -0.124084
MT2A metallothionein 2A -0.0889334
ACTG1 actin gamma 1 -0.088513
PTMA prothymosin, alpha -0.0672497
HMGA1 high mobility group AT-hook 1 -0.0602418
ALCAM activated leukocyte cell adhesion molecule -0.0584676
LPP LIM domain containing preferred translocation partner in lipoma -0.0529044
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0449673
RPL35A ribosomal protein L35a -0.0436919
ASPH aspartate beta-hydroxylase -0.042956
ZFP36L1 ZFP36 ring finger protein-like 1 -0.0427993
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.0417017
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0413469
POTEF POTE ankyrin domain family, member F -0.0388935
EXT1 exostosin glycosyltransferase 1 -0.0378115
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa -0.0372575
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0354899
LY6E lymphocyte antigen 6 complex, locus E -0.0353467
LMNA lamin A/C -0.0351572
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0344536
MYO6 myosin VI -0.0332082
FAM3C family with sequence similarity 3, member C -0.0325954
IFITM1 interferon induced transmembrane protein 1 -0.0325174
RBM25 RNA binding motif protein 25 -0.0315563
ERO1A endoplasmic reticulum oxidoreductase 1 alpha -0.0307623
DCBLD2 discoidin, CUB and LCCL domain containing 2 -0.0307266
ERBIN erbb2 interacting protein -0.0305732
AREG amphiregulin -0.0305222
SDC4 syndecan 4 -0.0297352
RPS19 ribosomal protein S19 -0.0288247
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0285909
S100A10 S100 calcium binding protein A10 -0.0283413
NPEPPS aminopeptidase puromycin sensitive -0.0279159
TUBB4B tubulin, beta 4B class IVb -0.0277111
SOX4 SRY (sex determining region Y)-box 4 -0.0270745
ITGA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) -0.0267221
S100A6 S100 calcium binding protein A6 -0.0260017
TRIO trio Rho guanine nucleotide exchange factor -0.0249015
RPLP2 ribosomal protein, large, P2 -0.0247285
LIMCH1 LIM and calponin homology domains 1 -0.0245022
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) -0.0244023
BASP1 brain abundant, membrane attached signal protein 1 -0.0241612
IFI27 interferon, alpha-inducible protein 27 -0.0240396
RRBP1 ribosome binding protein 1 -0.023025
RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 -0.0230171
ISG15 ISG15 ubiquitin-like modifier -0.0227922
TPT1 tumor protein, translationally-controlled 1 -0.0226449
CLDN4 claudin 4 -0.0221575
S100A4 S100 calcium binding protein A4 -0.0218661
TJP1 tight junction protein 1 -0.0216913
NPC2 Niemann-Pick disease, type C2 -0.0208582
TM4SF1 transmembrane 4 L six family member 1 -0.0208062
FNDC3B fibronectin type III domain containing 3B -0.0207492
LMO7 LIM domain 7 -0.0206703
RPS21 ribosomal protein S21 -0.0205974
SH3RF1 SH3 domain containing ring finger 1 -0.0205872
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0205718
LDHA lactate dehydrogenase A -0.0201983
IFI6 interferon, alpha-inducible protein 6 -0.02005
SMC4 structural maintenance of chromosomes 4 -0.0199792
TACSTD2 tumor-associated calcium signal transducer 2 -0.0199466
CD2AP CD2-associated protein -0.0199297
RAB7A RAB7A, member RAS oncogene family -0.01972
IFITM3 interferon induced transmembrane protein 3 -0.0196425
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0190656
RTN4 reticulon 4 -0.0188269
GRAMD2B GRAM domain containing 2B -0.0187101
TPI1 triosephosphate isomerase 1 -0.0186406
EFNA5 ephrin-A5 -0.0182564
FAM162A family with sequence similarity 162, member A -0.0180462
SH3BGRL3 SH3 domain binding glutamate-rich protein like 3 -0.0179245
RPL36 ribosomal protein L36 -0.0178356
ACTN4 actinin, alpha 4 -0.0176367
RPL9 ribosomal protein L9 -0.0176304
RPL23 ribosomal protein L23 -0.0175114
HMGB1 high mobility group box 1 -0.0174813
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0173174
ARHGAP20 Rho GTPase activating protein 20 -0.0172802
RPL32 ribosomal protein L32 -0.0171906
CENPE centromere protein E, 312kDa -0.0171715
VCL vinculin -0.0171075
PTBP3 polypyrimidine tract binding protein 3 -0.0170155
LOC102724023 ES1 protein homolog, mitochondrial -0.0170063
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0167862
GPX4 glutathione peroxidase 4 -0.0161881
ZFAND6 zinc finger, AN1-type domain 6 -0.0160209
WASF2 WAS protein family, member 2 -0.0159822
PFN1 profilin 1 -0.0159196
SEC61G Sec61 gamma subunit -0.0156926
S100A11 S100 calcium binding protein A11 -0.0156462
GNAI2 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 -0.0156334
ARHGAP29 Rho GTPase activating protein 29 -0.0154916
MYL12B myosin, light chain 12B, regulatory -0.0153981
STRN3 striatin, calmodulin binding protein 3 -0.0152145
MT1X metallothionein 1X -0.0152112
OSMR oncostatin M receptor -0.0151612
MAP4 microtubule-associated protein 4 -0.015148