Amsacrine_NCI-H661 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Amsacrine perturbation in NCI-H661 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Amsacrine_NCI-H661 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.107099
MED13L mediator complex subunit 13-like 0.0685639
PHIP pleckstrin homology domain interacting protein 0.0676428
BMPR2 bone morphogenetic protein receptor, type II (serine/threonine kinase) 0.0560967
EEF2 eukaryotic translation elongation factor 2 0.0559407
TSC22D2 TSC22 domain family, member 2 0.055747
XPO1 exportin 1 0.0512514
SREBF2 sterol regulatory element binding transcription factor 2 0.0493816
USP34 ubiquitin specific peptidase 34 0.048709
SIPA1L3 signal-induced proliferation-associated 1 like 3 0.0478216
NTM neurotrimin 0.0443945
APLP2 amyloid beta (A4) precursor-like protein 2 0.0441734
JMJD1C jumonji domain containing 1C 0.0421669
POTEF POTE ankyrin domain family, member F 0.0410143
NCOR2 nuclear receptor corepressor 2 0.0403998
ERBIN erbb2 interacting protein 0.0401109
ELF2 E74-like factor 2 (ets domain transcription factor) 0.0398525
KDM3A lysine (K)-specific demethylase 3A 0.0397609
SOS1 son of sevenless homolog 1 (Drosophila) 0.0396766
RICTOR RPTOR independent companion of MTOR, complex 2 0.0394515
HECTD4 HECT domain containing E3 ubiquitin protein ligase 4 0.0392526
TARS1 threonyl-tRNA synthetase 1 0.0375372
RALGAPA1 Ral GTPase activating protein, alpha subunit 1 (catalytic) 0.0373673
SNX6 sorting nexin 6 0.0362244
GOLPH3 golgi phosphoprotein 3 (coat-protein) 0.0358039
FNDC3B fibronectin type III domain containing 3B 0.035723
GSE1 Gse1 coiled-coil protein 0.035574
MACF1 microtubule-actin crosslinking factor 1 0.0355682
NOP58 NOP58 ribonucleoprotein 0.0346907
ZCCHC7 zinc finger, CCHC domain containing 7 0.0346874
FSCN1 fascin actin-bundling protein 1 0.0346286
SETD5 SET domain containing 5 0.0344503
DDIT4 DNA-damage-inducible transcript 4 0.0344016
ZMYM2 zinc finger, MYM-type 2 0.033885
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0335597
NDUFS1 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase) 0.033378
ITSN2 intersectin 2 0.0332367
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.033223
NIPBL Nipped-B homolog (Drosophila) 0.0328114
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0326774
SIPA1L1 signal-induced proliferation-associated 1 like 1 0.032559
NOTCH2 notch 2 0.0325067
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0325033
UBE2K ubiquitin-conjugating enzyme E2K 0.0324744
PRRC2C proline-rich coiled-coil 2C 0.0323468
TOX thymocyte selection-associated high mobility group box 0.0321991
VRK2 vaccinia related kinase 2 0.032035
NHSL1 NHS-like 1 0.0317564
PCM1 pericentriolar material 1 0.0315447
MDN1 MDN1, midasin homolog (yeast) 0.0315078
SLC38A1 solute carrier family 38, member 1 0.0310029
DENND1A DENN/MADD domain containing 1A 0.0309379
GPHN gephyrin 0.0304318
POLR2A polymerase (RNA) II (DNA directed) polypeptide A, 220kDa 0.0303551
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0303416
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.030295
LSM14A LSM14A, SCD6 homolog A (S. cerevisiae) 0.030242
FNBP1L formin binding protein 1-like 0.0302048
FBL fibrillarin 0.0295798
SETD2 SET domain containing 2 0.0295069
MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 0.0294453
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0292837
PCCA propionyl CoA carboxylase, alpha polypeptide 0.0291692
UBE2G1 ubiquitin-conjugating enzyme E2G 1 0.0290835
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0287699
PARD3B par-3 family cell polarity regulator beta 0.0287613
DOK6 docking protein 6 0.0287422
TLN1 talin 1 0.028688
NFIA nuclear factor I/A 0.0286227
SFTPA2 surfactant protein A2 0.0284872
NSUN6 NOP2/Sun domain family, member 6 0.0284544
FMNL2 formin-like 2 0.0284122
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0283839
TUT4 terminal uridylyl transferase 4 0.0281733
KTN1 kinectin 1 (kinesin receptor) 0.0280689
KDM5B lysine (K)-specific demethylase 5B 0.0280128
TRA2A transformer 2 alpha homolog (Drosophila) 0.0278641
NCOA2 nuclear receptor coactivator 2 0.0277169
PDE8A phosphodiesterase 8A 0.0275036
KMT2A lysine (K)-specific methyltransferase 2A 0.027351
DENND4C DENN/MADD domain containing 4C 0.0272535
SQSTM1 sequestosome 1 0.0272101
ARB2A ARB2 cotranscriptional regulator A 0.0269582
PRTG protogenin 0.0268982
GOLGA4 golgin A4 0.0267978
USP9X ubiquitin specific peptidase 9, X-linked 0.0265826
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.026517
TJP1 tight junction protein 1 0.0264441
SKIL SKI-like proto-oncogene 0.0263595
ZFC3H1 zinc finger, C3H1-type containing 0.026218
CMSS1 cms1 ribosomal small subunit homolog (yeast) 0.0260792
BRD2 bromodomain containing 2 0.0260197
RB1CC1 RB1-inducible coiled-coil 1 0.0259918
ELOF1 elongation factor 1 homolog (S. cerevisiae) 0.0259004
PDIA6 protein disulfide isomerase family A, member 6 0.0258449
VPS54 vacuolar protein sorting 54 homolog (S. cerevisiae) 0.0258286
SRP54 signal recognition particle 54kDa 0.0258027
ZNF609 zinc finger protein 609 0.0257722
FAM168B family with sequence similarity 168, member B 0.0257501
GARRE1 granule associated Rac and RHOG effector 1 0.025704

decreased expression

Symbol Name Standardized Value
VIM vimentin -0.190516
ERBB4 erb-b2 receptor tyrosine kinase 4 -0.170178
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.159893
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.10832
COL5A2 collagen, type V, alpha 2 -0.092126
TOP2A topoisomerase (DNA) II alpha 170kDa -0.087647
PCDH9 protocadherin 9 -0.082525
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0796185
TMSB10 thymosin beta 10 -0.0793021
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0662651
GPC3 glypican 3 -0.0642262
PTMA prothymosin, alpha -0.0640136
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0629226
CADM2 cell adhesion molecule 2 -0.0626192
ACTG1 actin gamma 1 -0.0604817
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0593663
ADGRL2 adhesion G protein-coupled receptor L2 -0.0583635
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0573993
COL3A1 collagen, type III, alpha 1 -0.0557311
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0550818
PDGFC platelet derived growth factor C -0.0548522
BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 -0.0545733
NAP1L1 nucleosome assembly protein 1-like 1 -0.0541154
ZNF385D zinc finger protein 385D -0.0520018
CENPE centromere protein E, 312kDa -0.0503185
TENM3 teneurin transmembrane protein 3 -0.049594
KPNB1 karyopherin (importin) beta 1 -0.0463692
GULP1 GULP, engulfment adaptor PTB domain containing 1 -0.045836
CSMD3 CUB and Sushi multiple domains 3 -0.0447509
METAP2 methionyl aminopeptidase 2 -0.0438801
THBS1 thrombospondin 1 -0.0429984
RPS21 ribosomal protein S21 -0.0429214
MYL12B myosin, light chain 12B, regulatory -0.0423242
DNAJC1 DnaJ (Hsp40) homolog, subfamily C, member 1 -0.0414403
FUBP1 far upstream element (FUSE) binding protein 1 -0.0400525
CDH6 cadherin 6, type 2, K-cadherin (fetal kidney) -0.0398116
RAB2A RAB2A, member RAS oncogene family -0.0394426
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 -0.0393932
DST dystonin -0.0387426
CTNNA3 catenin (cadherin-associated protein), alpha 3 -0.038665
COL11A1 collagen, type XI, alpha 1 -0.0383211
ITGAV integrin, alpha V -0.0376981
TPT1 tumor protein, translationally-controlled 1 -0.0358991
RAD21 RAD21 homolog (S. pombe) -0.0348023
WDR43 WD repeat domain 43 -0.0343049
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0342988
RTN4 reticulon 4 -0.0342699
NCAM2 neural cell adhesion molecule 2 -0.0341215
COLGALT2 collagen beta(1-O)galactosyltransferase 2 -0.0331604
SYT1 synaptotagmin I -0.0329918
PDE4D phosphodiesterase 4D, cAMP-specific -0.0328918
ZNF292 zinc finger protein 292 -0.0328819
TPX2 TPX2, microtubule-associated -0.0328256
DDAH1 dimethylarginine dimethylaminohydrolase 1 -0.0325499
SMYD3 SET and MYND domain containing 3 -0.03251
RPL37 ribosomal protein L37 -0.0323804
CDC50A cell division cycle 50 P4-ATPase accessory subunit A -0.0322268
SAMD4B sterile alpha motif domain containing 4B -0.0321391
ZFAND3 zinc finger, AN1-type domain 3 -0.0319991
NR2F1 nuclear receptor subfamily 2, group F, member 1 -0.0313391
ZEB2 zinc finger E-box binding homeobox 2 -0.0311871
COL1A2 collagen, type I, alpha 2 -0.0311659
RIGI RNA sensor RIG-I -0.0310877
SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 -0.0307803
TXNRD1 thioredoxin reductase 1 -0.0305508
TTK TTK protein kinase -0.0304079
KIF4A kinesin family member 4A -0.0301693
EMP1 epithelial membrane protein 1 -0.0301495
RAI1 retinoic acid induced 1 -0.029988
SHROOM3 shroom family member 3 -0.0297705
NPAS3 neuronal PAS domain protein 3 -0.0295217
ANKRD50 ankyrin repeat domain 50 -0.0291759
VCL vinculin -0.0289731
TRPS1 trichorhinophalangeal syndrome I -0.0286763
FIGN fidgetin -0.0286022
PLEKHG1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 -0.0284989
HMGA2 high mobility group AT-hook 2 -0.028369
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0282931
HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 -0.0282807
PPP1R12A protein phosphatase 1, regulatory subunit 12A -0.027802
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein -0.0274942
DMD dystrophin -0.027304
SEMA3E sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E -0.027139
CALM3 calmodulin 3 (phosphorylase kinase, delta) -0.0268228
ADGRV1 adhesion G protein-coupled receptor V1 -0.0267734
SEMA3D sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D -0.0267417
KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 -0.0267284
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0264526
CALU calumenin -0.0264485
SMURF1 SMAD specific E3 ubiquitin protein ligase 1 -0.0262758
EIF3H eukaryotic translation initiation factor 3, subunit H -0.0262163
CDH10 cadherin 10, type 2 (T2-cadherin) -0.0261835
TPM4 tropomyosin 4 -0.0261815
USP3 ubiquitin specific peptidase 3 -0.0257373
ZNF608 zinc finger protein 608 -0.0256632
MRPS30 mitochondrial ribosomal protein S30 -0.0255155
FOXP2 forkhead box P2 -0.0254693
CXADR coxsackie virus and adenovirus receptor -0.0252251
PEG10 paternally expressed 10 -0.0249984
ASXL1 additional sex combs like transcriptional regulator 1 -0.0248678