Amsacrine_SW 1271 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Amsacrine perturbation in SW 1271 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Amsacrine_SW 1271 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.152022
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0738495
LOC112694756 uncharaterized LOC112694756 0.0732235
MACF1 microtubule-actin crosslinking factor 1 0.0671396
MBNL1 muscleblind-like splicing regulator 1 0.0529887
NAV2 neuron navigator 2 0.0500558
SVIL supervillin 0.0498972
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C 0.0482179
MBNL2 muscleblind-like splicing regulator 2 0.0477826
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0466769
CHD1 chromodomain helicase DNA binding protein 1 0.0465654
HSPH1 heat shock 105kDa/110kDa protein 1 0.0462054
LRBA LPS-responsive vesicle trafficking, beach and anchor containing 0.0457676
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0450787
RNF145 ring finger protein 145 0.0449225
ZSWIM6 zinc finger, SWIM-type containing 6 0.0445455
PKM pyruvate kinase, muscle 0.0441429
FMNL2 formin-like 2 0.0436364
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0436004
CUL3 cullin 3 0.0420517
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.041416
MAP3K2 mitogen-activated protein kinase kinase kinase 2 0.0397234
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0395717
ANXA1 annexin A1 0.0392101
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0382784
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0372518
RAD23B RAD23 homolog B (S. cerevisiae) 0.0370883
PNISR PNN-interacting serine/arginine-rich protein 0.0370132
SMAD3 SMAD family member 3 0.0362902
SQSTM1 sequestosome 1 0.0352363
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0351311
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0350244
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.0343932
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0341056
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0340724
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.0327948
SLC38A2 solute carrier family 38, member 2 0.0327285
NR4A3 nuclear receptor subfamily 4, group A, member 3 0.0326678
CBL Cbl proto-oncogene, E3 ubiquitin protein ligase 0.0324864
HPCAL1 hippocalcin-like 1 0.0321552
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0321307
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0316813
ATF7IP activating transcription factor 7 interacting protein 0.030828
DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 0.0305806
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0300581
GATAD2A GATA zinc finger domain containing 2A 0.0295477
PPP6R3 protein phosphatase 6, regulatory subunit 3 0.0294577
POTEF POTE ankyrin domain family, member F 0.0294032
LDHB lactate dehydrogenase B 0.02895
SETD5 SET domain containing 5 0.0287139
COG6 component of oligomeric golgi complex 6 0.0283788
TES testin LIM domain protein 0.028191
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0281494
MSN moesin 0.0279514
TRRAP transformation/transcription domain-associated protein 0.0278765
HSPA8 heat shock 70kDa protein 8 0.0277166
ERBIN erbb2 interacting protein 0.0273141
AEBP2 AE binding protein 2 0.0271316
GLS2 glutaminase 2 (liver, mitochondrial) 0.0268502
FBXO11 F-box protein 11 0.0266732
SOS1 son of sevenless homolog 1 (Drosophila) 0.0266406
MMAB methylmalonic aciduria (cobalamin deficiency) cblB type 0.026348
ANXA2 annexin A2 0.026281
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0261978
ITGAV integrin, alpha V 0.0261586
AHR aryl hydrocarbon receptor 0.0260832
EIF4A2 eukaryotic translation initiation factor 4A2 0.0260703
HIBCH 3-hydroxyisobutyryl-CoA hydrolase 0.026021
FLNA filamin A, alpha 0.0258159
AGTPBP1 ATP/GTP binding protein 1 0.0257891
ITPRID2 ITPR interacting domain containing 2 0.0256191
RUBCN rubicon autophagy regulator 0.0255687
NR4A2 nuclear receptor subfamily 4, group A, member 2 0.0254384
FXR1 fragile X mental retardation, autosomal homolog 1 0.0254267
PRRC2B proline-rich coiled-coil 2B 0.0252042
RALGAPB Ral GTPase activating protein, beta subunit (non-catalytic) 0.0251953
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 0.0249356
PNRC1 proline-rich nuclear receptor coactivator 1 0.0248409
INTS6 integrator complex subunit 6 0.0248114
NPEPPS aminopeptidase puromycin sensitive 0.0246979
FBXW11 F-box and WD repeat domain containing 11 0.02467
MAPK14 mitogen-activated protein kinase 14 0.0245839
JMJD1C jumonji domain containing 1C 0.0244728
BRD2 bromodomain containing 2 0.0244102
ANKRD37 ankyrin repeat domain 37 0.0243497
CSNK1A1 casein kinase 1, alpha 1 0.0242965
YTHDF3 YTH N(6)-methyladenosine RNA binding protein 3 0.0242142
NRIP1 nuclear receptor interacting protein 1 0.0242006
LGALS12 lectin, galactoside-binding, soluble, 12 0.0241742
ZNF638 zinc finger protein 638 0.0240375
RNASEH2A ribonuclease H2, subunit A 0.0239698
SPIRE1 spire-type actin nucleation factor 1 0.0239207
PREPL prolyl endopeptidase-like 0.0238279
HELZ helicase with zinc finger 0.0235508
CAPRIN2 caprin family member 2 0.0233344
PLEC plectin 0.0232735
ARCN1 archain 1 0.0231781
SLMAP sarcolemma associated protein 0.0231303
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0230367
ATXN1 ataxin 1 0.0229906

decreased expression

Symbol Name Standardized Value
BASP1 brain abundant, membrane attached signal protein 1 -0.0818806
VIM vimentin -0.0781643
TMSB10 thymosin beta 10 -0.0766869
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0716497
AKAP12 A kinase (PRKA) anchor protein 12 -0.0712051
IGFBP3 insulin-like growth factor binding protein 3 -0.0683935
PTMA prothymosin, alpha -0.0670292
ZC3HAV1 zinc finger CCCH-type, antiviral 1 -0.0652689
SAMD4A sterile alpha motif domain containing 4A -0.0490337
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0482313
TAS2R14 taste receptor, type 2, member 14 -0.0480616
FTH1 ferritin, heavy polypeptide 1 -0.0468719
TPT1 tumor protein, translationally-controlled 1 -0.0465953
PALM2AKAP2 PALM2 and AKAP2 fusion -0.0460231
EGR1 early growth response 1 -0.0453693
HDAC9 histone deacetylase 9 -0.0448181
SMYD3 SET and MYND domain containing 3 -0.0432999
H3-3B H3.3 histone B -0.0431678
RAI14 retinoic acid induced 14 -0.042618
SMC4 structural maintenance of chromosomes 4 -0.0425454
TRIO trio Rho guanine nucleotide exchange factor -0.0422833
EEA1 early endosome antigen 1 -0.0413895
HLA-B major histocompatibility complex, class I, B -0.0411024
NAP1L1 nucleosome assembly protein 1-like 1 -0.0405733
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa -0.0401131
MT2A metallothionein 2A -0.0387179
ARHGAP26 Rho GTPase activating protein 26 -0.0380523
MCTP1 multiple C2 domains, transmembrane 1 -0.0378306
CEMIP2 cell migration inducing hyaluronidase 2 -0.0375321
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) -0.0371251
BRAF B-Raf proto-oncogene, serine/threonine kinase -0.0364191
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0363195
DTNA dystrobrevin, alpha -0.0360816
FNIP1 folliculin interacting protein 1 -0.0359667
ERC2 ELKS/RAB6-interacting/CAST family member 2 -0.0359106
TNRC6B trinucleotide repeat containing 6B -0.0350569
ARHGEF12 Rho guanine nucleotide exchange factor (GEF) 12 -0.0340606
IGF2 insulin-like growth factor 2 -0.0340089
MT1X metallothionein 1X -0.0338304
MEMO1 mediator of cell motility 1 -0.033698
IER3 immediate early response 3 -0.03259
NCOR1 nuclear receptor corepressor 1 -0.0317956
DPYD dihydropyrimidine dehydrogenase -0.0311786
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0310696
ZEB1 zinc finger E-box binding homeobox 1 -0.0310245
RAD51B RAD51 paralog B -0.030949
FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) -0.0306165
EXT1 exostosin glycosyltransferase 1 -0.0304635
MON2 MON2 homolog (S. cerevisiae) -0.0303516
CD44 CD44 molecule (Indian blood group) -0.0302998
AKAP13 A kinase (PRKA) anchor protein 13 -0.0300889
MEF2A myocyte enhancer factor 2A -0.0300648
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0298619
ARMH4 armadillo like helical domain containing 4 -0.029823
UBE2K ubiquitin-conjugating enzyme E2K -0.0296878
DERA deoxyribose-phosphate aldolase (putative) -0.0296346
RB1CC1 RB1-inducible coiled-coil 1 -0.0295464
B2M beta-2-microglobulin -0.0294617
NSRP1 nuclear speckle splicing regulatory protein 1 -0.0291897
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) -0.029097
IGF1R insulin-like growth factor 1 receptor -0.0288133
RPS23 ribosomal protein S23 -0.0287512
LIMS1 LIM and senescent cell antigen-like domains 1 -0.0286975
S100A9 S100 calcium binding protein A9 -0.0285638
FMN1 formin 1 -0.0285017
PGK1 phosphoglycerate kinase 1 -0.028458
VCL vinculin -0.0280371
RIN2 Ras and Rab interactor 2 -0.0274335
DOCK4 dedicator of cytokinesis 4 -0.0273702
UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 -0.0271858
RPL23 ribosomal protein L23 -0.0271021
DENND4A DENN/MADD domain containing 4A -0.0270747
DYNC2H1 dynein, cytoplasmic 2, heavy chain 1 -0.0269281
ESYT2 extended synaptotagmin-like protein 2 -0.0268864
OPTN optineurin -0.0268199
AVL9 AVL9 homolog (S. cerevisiase) -0.0267643
GPC6 glypican 6 -0.0267545
AP3B1 adaptor-related protein complex 3, beta 1 subunit -0.0266728
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 -0.0266712
SECISBP2 SECIS binding protein 2 -0.0266517
ARPC2 actin related protein 2/3 complex, subunit 2, 34kDa -0.0266465
SDC4 syndecan 4 -0.026505
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0259002
PARD3 par-3 family cell polarity regulator -0.0259
MAPKAP1 mitogen-activated protein kinase associated protein 1 -0.0258795
BTG1 B-cell translocation gene 1, anti-proliferative -0.0257046
KMT2C lysine (K)-specific methyltransferase 2C -0.02568
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0255785
PBX3 pre-B-cell leukemia homeobox 3 -0.0255619
ATRX alpha thalassemia/mental retardation syndrome X-linked -0.0254909
STARD13 StAR-related lipid transfer (START) domain containing 13 -0.0254716
TRIM56 tripartite motif containing 56 -0.0252693
PRRC2C proline-rich coiled-coil 2C -0.0249291
ANGPTL4 angiopoietin-like 4 -0.024901
ARID2 AT rich interactive domain 2 (ARID, RFX-like) -0.0248627
DSCAM Down syndrome cell adhesion molecule -0.0248247
CWC27 CWC27 spliceosome-associated protein homolog (S. cerevisiae) -0.0247733
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 -0.0247712
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0247565
RPS27A ribosomal protein S27a -0.0245796