Ataluren_LS 180 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ataluren perturbation in LS 180 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ataluren_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
LDHA lactate dehydrogenase A 0.137166
FAT1 FAT atypical cadherin 1 0.12702
ATP1B1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.113702
EEF2 eukaryotic translation elongation factor 2 0.113442
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.109845
CEMIP cell migration inducing protein, hyaluronan binding 0.101169
DSCAM Down syndrome cell adhesion molecule 0.095263
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0912037
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0890609
NDRG1 N-myc downstream regulated 1 0.0865623
EREG epiregulin 0.0864566
DSPP dentin sialophosphoprotein 0.0863792
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0787954
MYH9 myosin, heavy chain 9, non-muscle 0.078202
PGK1 phosphoglycerate kinase 1 0.0774935
EIF1 eukaryotic translation initiation factor 1 0.0768359
EPCAM epithelial cell adhesion molecule 0.0763423
ANXA2 annexin A2 0.0718047
PRELID2 PRELI domain containing 2 0.0717665
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0714048
CALR calreticulin 0.0689957
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0687103
KRT8 keratin 8, type II 0.0685326
ITGA6 integrin, alpha 6 0.0627669
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0609357
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0601269
TNFRSF10B tumor necrosis factor receptor superfamily, member 10b 0.0594994
FAM13A family with sequence similarity 13, member A 0.0579703
MACF1 microtubule-actin crosslinking factor 1 0.0572349
MLEC malectin 0.0553206
LMO7 LIM domain 7 0.0550928
EZR ezrin 0.0548661
KRT18 keratin 18, type I 0.0542468
CSNK1A1 casein kinase 1, alpha 1 0.0542101
H1-0 H1.0 linker histone 0.054001
ACTN4 actinin, alpha 4 0.0527029
ARHGAP5 Rho GTPase activating protein 5 0.0523858
PDIA6 protein disulfide isomerase family A, member 6 0.0503144
KIF5B kinesin family member 5B 0.0502706
PTEN phosphatase and tensin homolog 0.0497078
TMSB4X thymosin beta 4, X-linked 0.0494671
TXNIP thioredoxin interacting protein 0.0492096
ZFAND3 zinc finger, AN1-type domain 3 0.0491904
ITPRID2 ITPR interacting domain containing 2 0.0485405
AREG amphiregulin 0.0484948
AFDN afadin, adherens junction formation factor 0.0454699
EHF ets homologous factor 0.04516
KDM3A lysine (K)-specific demethylase 3A 0.0450726
MUC13 mucin 13, cell surface associated 0.0447859
SRRM2 serine/arginine repetitive matrix 2 0.0447609
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.044059
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 0.0429212
ASPH aspartate beta-hydroxylase 0.042669
CDH17 cadherin 17, LI cadherin (liver-intestine) 0.0420489
MED13 mediator complex subunit 13 0.0416803
KTN1 kinectin 1 (kinesin receptor) 0.0409116
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0408229
RPL7A ribosomal protein L7a 0.0405637
KDM7A lysine (K)-specific demethylase 7A 0.0405381
ANKRD11 ankyrin repeat domain 11 0.0403293
FLNB filamin B, beta 0.0395968
HSPA8 heat shock 70kDa protein 8 0.0393615
TXNRD1 thioredoxin reductase 1 0.0385413
ENO1 enolase 1, (alpha) 0.0384576
B2M beta-2-microglobulin 0.0376593
RBM39 RNA binding motif protein 39 0.0376509
EIF4A2 eukaryotic translation initiation factor 4A2 0.0371738
PLAUR plasminogen activator, urokinase receptor 0.036965
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0369061
GOLGA4 golgin A4 0.036904
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0366909
STT3B STT3B, subunit of the oligosaccharyltransferase complex (catalytic) 0.0366059
MDM2 MDM2 proto-oncogene, E3 ubiquitin protein ligase 0.0365217
OGA O-GlcNAcase 0.0361431
DDIT4 DNA-damage-inducible transcript 4 0.0359191
TPM3 tropomyosin 3 0.0349857
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0335632
TMED2 transmembrane emp24 domain trafficking protein 2 0.0326235
ANXA11 annexin A11 0.0324021
SFTPA2 surfactant protein A2 0.0323812
MCL1 myeloid cell leukemia 1 0.032062
CSDE1 cold shock domain containing E1, RNA-binding 0.0320526
USP9X ubiquitin specific peptidase 9, X-linked 0.0320047
SET SET nuclear proto-oncogene 0.0317647
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 0.0317095
CUL3 cullin 3 0.0315712
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0314849
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0314363
CD46 CD46 molecule, complement regulatory protein 0.031382
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.0311865
CANX calnexin 0.0307986
RPL7 ribosomal protein L7 0.0306722
SOS1 son of sevenless homolog 1 (Drosophila) 0.0305815
FNBP1L formin binding protein 1-like 0.0304467
HELZ helicase with zinc finger 0.0303627
UBE2H ubiquitin-conjugating enzyme E2H 0.0301786
CTSB cathepsin B 0.0301752
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0299224
APP amyloid beta (A4) precursor protein 0.0296444
ZNF292 zinc finger protein 292 0.0293594

decreased expression

Symbol Name Standardized Value
NPSR1 neuropeptide S receptor 1 -0.179015
TMSB10 thymosin beta 10 -0.142614
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0966532
GMDS GDP-mannose 4,6-dehydratase -0.0748614
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0642671
POTEF POTE ankyrin domain family, member F -0.0588564
RPS6 ribosomal protein S6 -0.0588154
MUC6 mucin 6, oligomeric mucus/gel-forming -0.0550892
ACTG1 actin gamma 1 -0.048493
PTMA prothymosin, alpha -0.0454767
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0441809
PTPRK protein tyrosine phosphatase, receptor type, K -0.043185
GPHN gephyrin -0.0420041
BCAT1 branched chain amino-acid transaminase 1, cytosolic -0.0399649
ALCAM activated leukocyte cell adhesion molecule -0.0369745
MUC5B mucin 5B, oligomeric mucus/gel-forming -0.0357203
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0348085
HMGA1 high mobility group AT-hook 1 -0.0332605
MT2A metallothionein 2A -0.0318511
MUC17 mucin 17, cell surface associated -0.0313561
RPL35A ribosomal protein L35a -0.0311465
MYO1E myosin IE -0.0298429
MUC5AC mucin 5AC, oligomeric mucus/gel-forming -0.0290372
P4HB prolyl 4-hydroxylase, beta polypeptide -0.02834
RPL19 ribosomal protein L19 -0.0281838
RPLP1 ribosomal protein, large, P1 -0.0276874
RPLP2 ribosomal protein, large, P2 -0.027335
CCND1 cyclin D1 -0.0268171
HMGB1 high mobility group box 1 -0.0265551
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0262594
NEBL nebulette -0.0260648
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.026044
PDE4D phosphodiesterase 4D, cAMP-specific -0.025747
VCL vinculin -0.0256185
SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 -0.0245928
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0244739
EIF5B eukaryotic translation initiation factor 5B -0.0244415
PHLDA1 pleckstrin homology-like domain, family A, member 1 -0.0239772
SLC35F3 solute carrier family 35, member F3 -0.0237782
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.0235145
CDKAL1 CDK5 regulatory subunit associated protein 1-like 1 -0.0222909
RPS8 ribosomal protein S8 -0.0220982
FHIT fragile histidine triad -0.0216641
RPL27 ribosomal protein L27 -0.0212892
LSAMP limbic system-associated membrane protein -0.0212243
AGR2 anterior gradient 2 -0.0210213
RPS6KA5 ribosomal protein S6 kinase, 90kDa, polypeptide 5 -0.0210111
FTH1 ferritin, heavy polypeptide 1 -0.0206928
SLCO1B3-SLCO1B7 SLCO1B3-SLCO1B7 readthrough -0.0205207
RPL21 ribosomal protein L21 -0.0201028
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0199584
PPARG peroxisome proliferator-activated receptor gamma -0.0193614
MGST1 microsomal glutathione S-transferase 1 -0.0190738
POU2F1 POU class 2 homeobox 1 -0.0189108
RPL9 ribosomal protein L9 -0.0188053
CCDC91 coiled-coil domain containing 91 -0.0186181
RPL35 ribosomal protein L35 -0.0183999
IGFBP4 insulin-like growth factor binding protein 4 -0.0181857
GRIN2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B -0.0181839
CASK calcium/calmodulin-dependent serine protein kinase (MAGUK family) -0.0181079
RNF217 ring finger protein 217 -0.0179199
B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 -0.0173761
NRN1 neuritin 1 -0.0173673
PHLDB2 pleckstrin homology-like domain, family B, member 2 -0.0171422
RPL28 ribosomal protein L28 -0.0171277
PDLIM5 PDZ and LIM domain 5 -0.0170821
GPR39 G protein-coupled receptor 39 -0.016669
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0165751
NALF1 NALCN channel auxiliary factor 1 -0.0164322
EGFR epidermal growth factor receptor -0.0162896
ANTXR2 anthrax toxin receptor 2 -0.016261
MECOM MDS1 and EVI1 complex locus -0.0159538
MT1E metallothionein 1E -0.0157019
BTG1 B-cell translocation gene 1, anti-proliferative -0.0156872
NRXN3 neurexin 3 -0.0156864
EXT1 exostosin glycosyltransferase 1 -0.0154562
HELLS helicase, lymphoid-specific -0.0153763
POF1B premature ovarian failure, 1B -0.0152532
RPS5 ribosomal protein S5 -0.0152232
TUBA1B tubulin, alpha 1b -0.0151523
TFF1 trefoil factor 1 -0.0150853
TUBB tubulin, beta class I -0.0149702
VTI1A vesicle transport through interaction with t-SNAREs 1A -0.014961
RPL34 ribosomal protein L34 -0.0149044
KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) -0.0148647
ARHGAP6 Rho GTPase activating protein 6 -0.0146035
RPL5 ribosomal protein L5 -0.0145498
ERGIC1 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 -0.0145383
LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor -0.0145071
CYB5R3 cytochrome b5 reductase 3 -0.0144839
RTN3 reticulon 3 -0.0143286
PFN1 profilin 1 -0.0141868
SH3BGRL3 SH3 domain binding glutamate-rich protein like 3 -0.0140898
RPL37A ribosomal protein L37a -0.0140589
RNF145 ring finger protein 145 -0.0139496
PKP4 plakophilin 4 -0.0138823
SEC24D SEC24 family member D -0.0136805
FNDC3A fibronectin type III domain containing 3A -0.0136488
RAD51B RAD51 paralog B -0.0135847
KAT6B K(lysine) acetyltransferase 6B -0.0134492