Ataluren_NCI-H2030 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Ataluren perturbation in NCI-H2030 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Ataluren_NCI-H2030 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.110846
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.103089
TM4SF1 transmembrane 4 L six family member 1 0.102711
BIRC3 baculoviral IAP repeat containing 3 0.101738
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0997774
HSPA8 heat shock 70kDa protein 8 0.0917977
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0862436
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0822576
MKI67 marker of proliferation Ki-67 0.0773075
MYH9 myosin, heavy chain 9, non-muscle 0.0724508
PDIA6 protein disulfide isomerase family A, member 6 0.0719102
CALR calreticulin 0.0712399
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0703189
TPM3 tropomyosin 3 0.0678505
MT2A metallothionein 2A 0.0619352
GRAMD1B GRAM domain containing 1B 0.0615113
CFLAR CASP8 and FADD-like apoptosis regulator 0.0609174
EEF2 eukaryotic translation elongation factor 2 0.0575227
ASPH aspartate beta-hydroxylase 0.0555285
IGF2 insulin-like growth factor 2 0.0490524
PFDN2 prefoldin subunit 2 0.0489088
KIF5B kinesin family member 5B 0.0477434
TOP2A topoisomerase (DNA) II alpha 170kDa 0.0474477
RPL23 ribosomal protein L23 0.047139
ERRFI1 ERBB receptor feedback inhibitor 1 0.0469427
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0467173
SFTPA2 surfactant protein A2 0.0455982
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0454667
LANCL1 LanC lantibiotic synthetase component C-like 1 (bacterial) 0.04489
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0445977
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0438315
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0436958
FGB fibrinogen beta chain 0.0432654
MCL1 myeloid cell leukemia 1 0.042471
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0391402
CXCL8 chemokine (C-X-C motif) ligand 8 0.0377582
SET SET nuclear proto-oncogene 0.0373251
CANX calnexin 0.0367847
EIF1 eukaryotic translation initiation factor 1 0.0367047
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0359811
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0333265
RPS12 ribosomal protein S12 0.0332165
SAMD4A sterile alpha motif domain containing 4A 0.0327371
DST dystonin 0.0322487
GOLGA4 golgin A4 0.03223
NCEH1 neutral cholesterol ester hydrolase 1 0.030535
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) 0.030064
CENPF centromere protein F, 350/400kDa 0.0299959
PSMD11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 0.0281898
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0281554
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0281315
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 0.0274767
RPL3 ribosomal protein L3 0.027148
RB1CC1 RB1-inducible coiled-coil 1 0.0270804
ANLN anillin, actin binding protein 0.0269793
NAP1L1 nucleosome assembly protein 1-like 1 0.0263209
HNRNPUL2 heterogeneous nuclear ribonucleoprotein U-like 2 0.0262137
SERINC3 serine incorporator 3 0.0257212
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0255763
TMED2 transmembrane emp24 domain trafficking protein 2 0.0253497
PM20D1 peptidase M20 domain containing 1 0.0253172
ELL2 elongation factor, RNA polymerase II, 2 0.0252346
RAB6A RAB6A, member RAS oncogene family 0.0248895
NUP58 nucleoporin 58 0.0244448
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 0.0242368
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 0.0242234
PSMC6 proteasome (prosome, macropain) 26S subunit, ATPase, 6 0.0240614
NPC1 Niemann-Pick disease, type C1 0.0240152
HNRNPDL heterogeneous nuclear ribonucleoprotein D-like 0.0239006
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0238693
CCT5 chaperonin containing TCP1, subunit 5 (epsilon) 0.0232186
TNPO1 transportin 1 0.0231062
KPNB1 karyopherin (importin) beta 1 0.0229709
APLP2 amyloid beta (A4) precursor-like protein 2 0.0228178
SP3 Sp3 transcription factor 0.0224536
SFPQ splicing factor proline/glutamine-rich 0.0220811
MORF4L2 mortality factor 4 like 2 0.0220438
HYOU1 hypoxia up-regulated 1 0.0218385
SOD2 superoxide dismutase 2, mitochondrial 0.0218039
LAMC1 laminin, gamma 1 (formerly LAMB2) 0.0215706
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta 0.0214182
CSDE1 cold shock domain containing E1, RNA-binding 0.0211949
IER3 immediate early response 3 0.0206832
RICTOR RPTOR independent companion of MTOR, complex 2 0.0204657
DSE dermatan sulfate epimerase 0.0204284
RPL30 ribosomal protein L30 0.0204254
HSPD1 heat shock 60kDa protein 1 (chaperonin) 0.0204071
ZC3HAV1 zinc finger CCCH-type, antiviral 1 0.0203904
RPS15A ribosomal protein S15a 0.0203078
SF3B1 splicing factor 3b, subunit 1, 155kDa 0.0201707
DLGAP5 discs, large (Drosophila) homolog-associated protein 5 0.0200476
RPS7 ribosomal protein S7 0.0199911
CALU calumenin 0.0198973
FTH1 ferritin, heavy polypeptide 1 0.019794
WDR43 WD repeat domain 43 0.0197752
TFG TRK-fused gene 0.0196704
PLEC plectin 0.0196354
FGG fibrinogen gamma chain 0.0194736
CALM2 calmodulin 2 (phosphorylase kinase, delta) 0.0194201
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 0.0191158

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.36906
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.132667
TMSB10 thymosin beta 10 -0.119525
FTL ferritin, light polypeptide -0.0982797
MKLN1 muskelin 1, intracellular mediator containing kelch motifs -0.0604756
CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 -0.0583632
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0577824
ACTG1 actin gamma 1 -0.0557823
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 -0.0542822
POTEF POTE ankyrin domain family, member F -0.0541627
BASP1 brain abundant, membrane attached signal protein 1 -0.052937
RPL19 ribosomal protein L19 -0.0501168
PDE4D phosphodiesterase 4D, cAMP-specific -0.0492133
MAP1LC3B microtubule-associated protein 1 light chain 3 beta -0.0471592
THSD4 thrombospondin, type I, domain containing 4 -0.0465938
PKM pyruvate kinase, muscle -0.0456927
FNDC3B fibronectin type III domain containing 3B -0.0453323
PARD3 par-3 family cell polarity regulator -0.0445984
TRIO trio Rho guanine nucleotide exchange factor -0.0436767
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0428184
SIK3 SIK family kinase 3 -0.0410567
VIM vimentin -0.0408683
HDAC9 histone deacetylase 9 -0.0408677
FMNL2 formin-like 2 -0.0393564
S100A6 S100 calcium binding protein A6 -0.0384833
RNF145 ring finger protein 145 -0.0368492
CNOT1 CCR4-NOT transcription complex, subunit 1 -0.0367507
AKAP13 A kinase (PRKA) anchor protein 13 -0.0360565
PUM2 pumilio RNA-binding family member 2 -0.0358391
RBM25 RNA binding motif protein 25 -0.0349826
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0348604
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase -0.0347846
TBC1D8 TBC1 domain family, member 8 (with GRAM domain) -0.0345622
BABAM2 BRISC and BRCA1 A complex member 2 -0.0333466
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) -0.032678
RPS5 ribosomal protein S5 -0.0323184
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0319597
FOS FBJ murine osteosarcoma viral oncogene homolog -0.0319106
COPA coatomer protein complex, subunit alpha -0.0315592
FNBP1L formin binding protein 1-like -0.0315252
AP2B1 adaptor-related protein complex 2, beta 1 subunit -0.031284
FOSB FBJ murine osteosarcoma viral oncogene homolog B -0.0307002
DOCK4 dedicator of cytokinesis 4 -0.0305695
USP3 ubiquitin specific peptidase 3 -0.0305569
IGFBP4 insulin-like growth factor binding protein 4 -0.0302907
MAP3K5 mitogen-activated protein kinase kinase kinase 5 -0.0299615
MYADM myeloid-associated differentiation marker -0.0299211
KCTD9 potassium channel tetramerization domain containing 9 -0.0298282
SHANK2 SH3 and multiple ankyrin repeat domains 2 -0.0292051
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0291513
TXNRD1 thioredoxin reductase 1 -0.0283553
TPD52 tumor protein D52 -0.0280822
UBASH3B ubiquitin associated and SH3 domain containing B -0.0278222
ARHGEF28 Rho guanine nucleotide exchange factor (GEF) 28 -0.0276856
IGFBP3 insulin-like growth factor binding protein 3 -0.0275332
RBPJ recombination signal binding protein for immunoglobulin kappa J region -0.0274228
AHR aryl hydrocarbon receptor -0.0268601
S100A10 S100 calcium binding protein A10 -0.0267989
BMPR1B bone morphogenetic protein receptor, type IB -0.0267807
RPS16 ribosomal protein S16 -0.0266922
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 -0.0265607
HMGA1 high mobility group AT-hook 1 -0.0261687
KYNU kynureninase -0.0260781
SVIL supervillin -0.0260235
TMEM131 transmembrane protein 131 -0.0258298
EFNA5 ephrin-A5 -0.0257925
ZFAND3 zinc finger, AN1-type domain 3 -0.0256982
UTRN utrophin -0.0256439
PFN1 profilin 1 -0.0254448
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0252337
UGCG UDP-glucose ceramide glucosyltransferase -0.024969
RASAL2 RAS protein activator like 2 -0.0248921
RYK receptor-like tyrosine kinase -0.0248152
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0247881
RPL13A ribosomal protein L13a -0.024597
JMJD1C jumonji domain containing 1C -0.0242784
TPI1 triosephosphate isomerase 1 -0.0240017
PRRC1 proline-rich coiled-coil 1 -0.0238321
VDAC1 voltage-dependent anion channel 1 -0.023633
LGR4 leucine-rich repeat containing G protein-coupled receptor 4 -0.0235572
RPL28 ribosomal protein L28 -0.0235405
PTK2 protein tyrosine kinase 2 -0.0234321
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 -0.0234031
KDM5B lysine (K)-specific demethylase 5B -0.0229859
CHD9 chromodomain helicase DNA binding protein 9 -0.0228065
RPS6 ribosomal protein S6 -0.022795
TNRC6B trinucleotide repeat containing 6B -0.0225222
RPS15 ribosomal protein S15 -0.0220389
IFITM3 interferon induced transmembrane protein 3 -0.0220103
NEBL nebulette -0.0218879
AK1 adenylate kinase 1 -0.0217523
HLA-A major histocompatibility complex, class I, A -0.021752
EGFR epidermal growth factor receptor -0.0215638
SREK1 splicing regulatory glutamine/lysine-rich protein 1 -0.0212745
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive -0.0211409
NQO1 NAD(P)H dehydrogenase, quinone 1 -0.0209611
RPS4Y1 ribosomal protein S4, Y-linked 1 -0.020649
SLC38A2 solute carrier family 38, member 2 -0.020381
KDM2A lysine (K)-specific demethylase 2A -0.0203253
UBE2H ubiquitin-conjugating enzyme E2H -0.0202403