Autophagosome Gene Set

Dataset COMPARTMENTS Curated Protein Localization Evidence Scores 2025
Category structural or functional annotations
Type cellular component
External Link http://amigo.geneontology.org/amigo/term/GO:0005776
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83 proteins localized to the Autophagosome cellular component from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.

Symbol Name Standardized Value
TP53INP2 tumor protein p53 inducible nuclear protein 2 5.0
PIK3C3 phosphatidylinositol 3-kinase, catalytic subunit type 3 5.0
ATG14 autophagy related 14 5.0
FTH1 ferritin, heavy polypeptide 1 5.0
UBQLN1 ubiquilin 1 5.0
UBQLN4 ubiquilin 4 5.0
DAPK2 death-associated protein kinase 2 5.0
ULK1 unc-51 like autophagy activating kinase 1 5.0
FYCO1 FYVE and coiled-coil domain containing 1 5.0
RAB23 RAB23, member RAS oncogene family 5.0
UVRAG UV radiation resistance associated 5.0
TP53INP1 tumor protein p53 inducible nuclear protein 1 5.0
TBC1D5 TBC1 domain family, member 5 5.0
RUFY4 RUN and FYVE domain containing 4 5.0
MAPK15 mitogen-activated protein kinase 15 5.0
TBC1D25 TBC1 domain family, member 25 5.0
GABARAP GABA(A) receptor-associated protein 5.0
JMY junction mediating and regulatory protein, p53 cofactor 5.0
ZFYVE1 zinc finger, FYVE domain containing 1 5.0
WDR81 WD repeat domain 81 5.0
RUBCNL rubicon like autophagy enhancer 5.0
STING1 stimulator of interferon response cGAMP interactor 1 5.0
ATG5 autophagy related 5 5.0
PLEKHM1 pleckstrin homology domain containing, family M (with RUN domain) member 1 5.0
FTL ferritin, light polypeptide 5.0
GABARAPL2 GABA(A) receptor-associated protein-like 2 5.0
MAP1LC3B microtubule-associated protein 1 light chain 3 beta 5.0
NCOA4 nuclear receptor coactivator 4 5.0
AUP1 ancient ubiquitous protein 1 5.0
TECPR1 tectonin beta-propeller repeat containing 1 5.0
SH3GLB1 SH3-domain GRB2-like endophilin B1 5.0
WIPI1 WD repeat domain, phosphoinositide interacting 1 5.0
SLC6A4 solute carrier family 6 (neurotransmitter transporter), member 4 5.0
STX17 syntaxin 17 4.0
SQSTM1 sequestosome 1 4.0
PEG3 paternally expressed 3 4.0
TRIM32 tripartite motif containing 32 4.0
RNF103-CHMP3 RNF103-CHMP3 readthrough 4.0
OSBPL7 oxysterol binding protein-like 7 4.0
ATG4B autophagy related 4B, cysteine peptidase 4.0
VPS33A vacuolar protein sorting 33 homolog A (S. cerevisiae) 4.0
TEX264 testis expressed 264 4.0
ATP13A2 ATPase type 13A2 4.0
SNAP29 synaptosomal-associated protein, 29kDa 4.0
ATG16L1 autophagy related 16-like 1 (S. cerevisiae) 4.0
CLN3 ceroid-lipofuscinosis, neuronal 3 4.0
IRGM immunity-related GTPase family, M 4.0
ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 4.0
CHMP1A charged multivesicular body protein 1A 4.0
VTI1A vesicle transport through interaction with t-SNAREs 1A 4.0
LRRK2 leucine-rich repeat kinase 2 4.0
CHMP6 charged multivesicular body protein 6 4.0
CHMP4C charged multivesicular body protein 4C 4.0
CHMP4B charged multivesicular body protein 4B 4.0
CHMP5 charged multivesicular body protein 5 4.0
CHMP7 charged multivesicular body protein 7 4.0
VMP1 vacuole membrane protein 1 4.0
CHMP1B charged multivesicular body protein 1B 4.0
PRKD1 protein kinase D1 4.0
CHMP2A charged multivesicular body protein 2A 4.0
CALCOCO2 calcium binding and coiled-coil domain 2 4.0
WDFY3 WD repeat and FYVE domain containing 3 4.0
TBC1D14 TBC1 domain family, member 14 4.0
CHMP2B charged multivesicular body protein 2B 4.0
GABARAPL1 GABA(A) receptor-associated protein like 1 3.0
MAP1LC3B2 microtubule-associated protein 1 light chain 3 beta 2 3.0
LAMP2 lysosomal-associated membrane protein 2 3.0
PIP4K2A phosphatidylinositol-5-phosphate 4-kinase, type II, alpha 3.0
RAB3GAP2 RAB3 GTPase activating protein subunit 2 (non-catalytic) 3.0
PIP4K2C phosphatidylinositol-5-phosphate 4-kinase, type II, gamma 3.0
PIP4K2B phosphatidylinositol-5-phosphate 4-kinase, type II, beta 3.0
ATG9A autophagy related 9A 3.0
ATG13 autophagy related 13 3.0
TBC1D12 TBC1 domain family, member 12 3.0
ATG12 autophagy related 12 3.0
BECN1 beclin 1, autophagy related 3.0
ATG9B autophagy related 9B 3.0
ULK2 unc-51 like autophagy activating kinase 2 3.0
ULK3 unc-51 like kinase 3 3.0
RAB24 RAB24, member RAS oncogene family 3.0
MAP1LC3A microtubule-associated protein 1 light chain 3 alpha 3.0
MAP1LC3C microtubule-associated protein 1 light chain 3 gamma 3.0
WASHC1 WASH complex subunit 1 3.0