BECKER Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
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Genes

61 genes with high or low copy number in BECKER relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
GK2 glycerol kinase 2 4.51153
ANTXR2 anthrax toxin receptor 2 4.51153
PCAT4 prostate cancer associated transcript 4 (non-protein coding) 4.51153
TMEM165 transmembrane protein 165 2.93899
SRD5A3 steroid 5 alpha-reductase 3 2.93899
KDR kinase insert domain receptor 2.93899
SRD5A3-AS1 SRD5A3 antisense RNA 1 2.93899
CLOCK clock circadian regulator 2.93899
SNORA26 small nucleolar RNA, H/ACA box 26 2.76305
DANCR differentiation antagonizing non-protein coding RNA 2.76305
RASL11B RAS-like, family 11, member B 2.76305
ERVMER34-1 endogenous retrovirus group MER34, member 1 2.76305
MIR4449 microRNA 4449 2.76305
LOC152578 uncharacterized LOC152578 2.76305
FIP1L1 factor interacting with PAPOLA and CPSF1 2.64759
SGCB sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 2.64759
LNX1 ligand of numb-protein X 1, E3 ubiquitin protein ligase 2.64759
LNX1-AS1 LNX1 antisense RNA 1 2.64759
LRRC66 leucine rich repeat containing 66 2.64759
LNX1-AS2 LNX1 antisense RNA 2 2.64759
USP46 ubiquitin specific peptidase 46 2.64759
SPATA18 spermatogenesis associated 18 2.59653
KIT v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 2.59653
SCFD2 sec1 family domain containing 2 2.59653
GSX2 GS homeobox 2 2.44392
RPL21P44 ribosomal protein L21 pseudogene 44 2.44392
LOC100130673 phosphoribosyl pyrophosphate synthetase 2 pseudogene 2.44392
CHIC2 cysteine-rich hydrophobic domain 2 2.44392
RP9P retinitis pigmentosa 9 pseudogene 2.44392
LSM5 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2.44392
ZNRF2P1 zinc and ring finger 2 pseudogene 1 2.41451
MIR550A2 microRNA 550a-2 2.41451
PDE1C phosphodiesterase 1C, calmodulin-dependent 70kDa 2.41451
KBTBD2 kelch repeat and BTB (POZ) domain containing 2 2.41451
PDGFRA platelet-derived growth factor receptor, alpha polypeptide 2.41451
MIR550B2 microRNA 550b-2 2.41451
DPY19L1P2 DPY19L1 pseudogene 2 2.41451
OPA1 optic atrophy 1 (autosomal dominant) 2.3178
OPA1-AS1 OPA1 antisense RNA 1 2.3178
ATP13A5 ATPase type 13A5 2.30944
ATP13A4 ATPase type 13A4 2.30944
HRASLS HRAS-like suppressor 2.30944
MGC2889 uncharacterized protein MGC2889 2.30944
LRRC4C leucine rich repeat containing 4C 2.09431
FKBP9 FK506 binding protein 9, 63 kDa 2.08712
NT5C3A 5'-nucleotidase, cytosolic IIIA 2.08712
BBS9 Bardet-Biedl syndrome 9 2.08712
RP9 retinitis pigmentosa 9 (autosomal dominant) 2.08712
DPY19L1P1 DPY19L1 pseudogene 1 2.08712
AVL9 AVL9 homolog (S. cerevisiase) 2.08391
TPRG1 tumor protein p63 regulated 1 2.07558
MB21D2 Mab-21 domain containing 2 2.0752
LPP LIM domain containing preferred translocation partner in lipoma 2.07346
FGF12 fibroblast growth factor 12 2.0731

low copy number

Symbol Name Standardized Value
C2ORF82 chromosome 2 open reading frame 82 -3.24687
GIGYF2 GRB10 interacting GYF protein 2 -3.24687
NGEF neuronal guanine nucleotide exchange factor -3.24687
FAF1 Fas (TNFRSF6) associated factor 1 -2.86003
CDKN2C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) -2.85279
CFHR3 complement factor H-related 3 -2.76621
CFHR1 complement factor H-related 1 -2.76621