BEN Gene Set

Dataset COSMIC Cell Line Gene CNV Profiles
Category genomics
Type cell line
Description Human lung carcinoma; established from the supraclavicular tumor cells-containing lymph node of a 71-year-old man with poorly differentiated carcinoma of the lung. (BRENDA Tissue and Enzyme Source Ontology, BTO_0000253)
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Genes

76 genes with high or low copy number in BEN relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.

high copy number

Symbol Name Standardized Value
VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) 3.12177
HDIP1 HDAC and MIER1 interacting protein 1 3.12177
ORC6 origin recognition complex, subunit 6 3.12177
MYLK3 myosin light chain kinase 3 3.12177
NMNAT3 nicotinamide nucleotide adenylyltransferase 3 2.93899
C3ORF58 chromosome 3 open reading frame 58 2.93899
DNAJA2 DnaJ (Hsp40) homolog, subfamily A, member 2 2.93899
GPT2 glutamic pyruvate transaminase (alanine aminotransferase) 2 2.93899
RBP2 retinol binding protein 2, cellular 2.93899
RBP1 retinol binding protein 1, cellular 2.93899
PLS1 plastin 1 2.76305
COPB2 coatomer protein complex, subunit beta 2 (beta prime) 2.76305
U2SURP U2 snRNP-associated SURP domain containing 2.76305
TRPC1 transient receptor potential cation channel, subfamily C, member 1 2.76305
LOC100507389 uncharacterized LOC100507389 2.76305
ATR ATR serine/threonine kinase 2.76305
PCOLCE2 procollagen C-endopeptidase enhancer 2 2.76305
LOC100289361 uncharacterized LOC100289361 2.76305
PAQR9 progestin and adipoQ receptor family member IX 2.76305
PRR23C proline rich 23C 2.64759
PRR23B proline rich 23B 2.64759
BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) 2.64759
FOXL2 forkhead box L2 2.64759
FAIM Fas apoptotic inhibitory molecule 2.64759
CEP70 centrosomal protein 70kDa 2.64759
PISRT1 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) 2.64759
PRR23A proline rich 23A 2.64759
MRPS22 mitochondrial ribosomal protein S22 2.64759
PLSCR5 phospholipid scramblase family, member 5 2.64759
ESYT3 extended synaptotagmin-like protein 3 2.59653
PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta 2.59653
PLSCR2 phospholipid scramblase 2 2.59653
PLSCR1 phospholipid scramblase 1 2.59653
PLSCR4 phospholipid scramblase 4 2.59653
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 2.59653
PCBP3 poly(rC) binding protein 3 2.15316
LRP1B low density lipoprotein receptor-related protein 1B 2.14731
PDE3A phosphodiesterase 3A, cGMP-inhibited 2.07558
LOC100506393 uncharacterized LOC100506393 2.07558
MANSC4 MANSC domain containing 4 2.06061
CCDC91 coiled-coil domain containing 91 2.06061
KLHL42 kelch-like family member 42 2.06061
REP15 RAB15 effector protein 2.06061
MRPS35 mitochondrial ribosomal protein S35 2.06061
PTHLH parathyroid hormone-like hormone 2.05965
PPFIBP1 PTPRF interacting protein, binding protein 1 (liprin beta 1) 2.05965
SMCO2 single-pass membrane protein with coiled-coil domains 2 2.05942
C12ORF71 chromosome 12 open reading frame 71 2.05864
TM7SF3 transmembrane 7 superfamily member 3 2.05864
FGFR1OP2 FGFR1 oncogene partner 2 2.05864
MED21 mediator complex subunit 21 2.05864
ARNTL2 aryl hydrocarbon receptor nuclear translocator-like 2 2.05864
STK38L serine/threonine kinase 38 like 2.05778
ASUN asunder spermatogenesis regulator 2.05778
BHLHE41 basic helix-loop-helix family, member e41 2.05778
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 2.05661
RASSF8-AS1 RASSF8 atnisense RNA 1 2.05661
MIR4302 microRNA 4302 2.05635
SSPN sarcospan 2.05635
ITPR2 inositol 1,4,5-trisphosphate receptor, type 2 2.0557
BCAT1 branched chain amino-acid transaminase 1, cytosolic 2.05311
C12ORF77 chromosome 12 open reading frame 77 2.05311
LRMP lymphoid-restricted membrane protein 2.05242
CASC1 cancer susceptibility candidate 1 2.0521
LYRM5 LYR motif containing 5 2.0521
KRAS Kirsten rat sarcoma viral oncogene homolog 2.05093

low copy number

Symbol Name Standardized Value
MIR1305 microRNA 1305 -3.61078
MGC45800 -3.57558
TENM3 teneurin transmembrane protein 3 -3.56449
LINC00290 long intergenic non-protein coding RNA 290 -3.49112
VCX variable charge, X-linked -2.85607
PNPLA4 patatin-like phospholipase domain containing 4 -2.85607
AMY1A amylase, alpha 1A (salivary) -2.81685
AMY2A amylase, alpha 2A (pancreatic) -2.81685
STS steroid sulfatase (microsomal), isozyme S -2.7778
HCG4B HLA complex group 4B (non-protein coding) -2.75184