BI-78D3_SW 1088 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description BI-78D3 perturbation in SW 1088 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the BI-78D3_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
COL6A3 collagen, type VI, alpha 3 0.146429
ERRFI1 ERBB receptor feedback inhibitor 1 0.087004
SOD2 superoxide dismutase 2, mitochondrial 0.0777027
CXCL8 chemokine (C-X-C motif) ligand 8 0.0726877
IGFBP3 insulin-like growth factor binding protein 3 0.0692724
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 0.0671525
B2M beta-2-microglobulin 0.0656091
TRIO trio Rho guanine nucleotide exchange factor 0.0635896
ELL2 elongation factor, RNA polymerase II, 2 0.0609395
FTH1 ferritin, heavy polypeptide 1 0.0560814
MAP1B microtubule-associated protein 1B 0.0552445
FN1 fibronectin 1 0.0538936
FAM13A family with sequence similarity 13, member A 0.0522142
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0507618
ZNF395 zinc finger protein 395 0.0501912
CD44 CD44 molecule (Indian blood group) 0.0498842
ARRDC3 arrestin domain containing 3 0.044387
STC1 stanniocalcin 1 0.0435758
ZSWIM6 zinc finger, SWIM-type containing 6 0.0414595
MT2A metallothionein 2A 0.0410078
FNDC3B fibronectin type III domain containing 3B 0.0407026
GLS2 glutaminase 2 (liver, mitochondrial) 0.0394552
PKM pyruvate kinase, muscle 0.0388166
ATP13A3 ATPase type 13A3 0.0386729
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0379984
PDIA3 protein disulfide isomerase family A, member 3 0.0371046
CALD1 caldesmon 1 0.037093
PHLDA1 pleckstrin homology-like domain, family A, member 1 0.0357633
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase 0.034067
MYO10 myosin X 0.0336169
LDHA lactate dehydrogenase A 0.033192
IL6ST interleukin 6 signal transducer 0.0330441
MSN moesin 0.0326915
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 0.0325637
MYH9 myosin, heavy chain 9, non-muscle 0.0322656
IL6 interleukin 6 0.0313317
FRMD6 FERM domain containing 6 0.0305248
IGFBP7 insulin-like growth factor binding protein 7 0.0304169
KYNU kynureninase 0.0304031
SMAD3 SMAD family member 3 0.0303302
AKAP12 A kinase (PRKA) anchor protein 12 0.0301554
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0294576
TNS3 tensin 3 0.0292345
VEGFC vascular endothelial growth factor C 0.0289815
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta 0.0288701
TRA2A transformer 2 alpha homolog (Drosophila) 0.0286768
GOLGA4 golgin A4 0.0279574
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0275279
ANXA2 annexin A2 0.0274589
CDK6 cyclin-dependent kinase 6 0.0269121
MATR3 matrin 3 0.0259037
WNT5A wingless-type MMTV integration site family, member 5A 0.0258228
ESYT2 extended synaptotagmin-like protein 2 0.0256599
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0254417
MEF2A myocyte enhancer factor 2A 0.0253989
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0251894
RAB8B RAB8B, member RAS oncogene family 0.0251484
NAV1 neuron navigator 1 0.0245729
RTN4 reticulon 4 0.024528
LOX lysyl oxidase 0.0244862
COL1A2 collagen, type I, alpha 2 0.0244693
KMT2E lysine (K)-specific methyltransferase 2E 0.0243524
ANO6 anoctamin 6 0.0240008
NAMPT nicotinamide phosphoribosyltransferase 0.0238488
GLIS3 GLIS family zinc finger 3 0.0237875
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0234989
UBE2H ubiquitin-conjugating enzyme E2H 0.0233391
RUNX1 runt-related transcription factor 1 0.0231495
CALU calumenin 0.0231397
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 0.023123
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 0.0228997
LOXL2 lysyl oxidase-like 2 0.0226843
ATP2B1 ATPase, Ca++ transporting, plasma membrane 1 0.0226285
JUN jun proto-oncogene 0.0225555
SERINC3 serine incorporator 3 0.0220796
RLF rearranged L-myc fusion 0.0218653
IFRD1 interferon-related developmental regulator 1 0.0216504
SYNJ2 synaptojanin 2 0.0215749
TGFBR1 transforming growth factor, beta receptor 1 0.0215585
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 0.0211386
ROBO1 roundabout, axon guidance receptor, homolog 1 (Drosophila) 0.0211131
PALM2AKAP2 PALM2 and AKAP2 fusion 0.0209898
NRXN3 neurexin 3 0.0209118
FAT1 FAT atypical cadherin 1 0.0207733
LPP LIM domain containing preferred translocation partner in lipoma 0.0207328
ITGA5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide) 0.0205963
ENO1 enolase 1, (alpha) 0.0202107
AKAP13 A kinase (PRKA) anchor protein 13 0.0201482
TIMP3 TIMP metallopeptidase inhibitor 3 0.0196189
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0193455
MYO1E myosin IE 0.0191871
AUTS2 autism susceptibility candidate 2 0.0191651
RND3 Rho family GTPase 3 0.0191372
RNF145 ring finger protein 145 0.0190399
LIMS1 LIM and senescent cell antigen-like domains 1 0.0188799
CAV1 caveolin 1, caveolae protein, 22kDa 0.0188741
ETS1 v-ets avian erythroblastosis virus E26 oncogene homolog 1 0.0187145
AFF4 AF4/FMR2 family, member 4 0.018696
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0185282
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0183672

decreased expression

Symbol Name Standardized Value
HLA-B major histocompatibility complex, class I, B -0.0695511
PTMA prothymosin, alpha -0.0563099
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0560946
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.0534886
TPT1 tumor protein, translationally-controlled 1 -0.0385504
VIM vimentin -0.0317535
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0315532
FTL ferritin, light polypeptide -0.0285482
TGFBI transforming growth factor, beta-induced, 68kDa -0.026857
RRBP1 ribosome binding protein 1 -0.0251403
S100A10 S100 calcium binding protein A10 -0.0249216
HM13 histocompatibility (minor) 13 -0.0246099
COL1A1 collagen, type I, alpha 1 -0.0234736
RPS23 ribosomal protein S23 -0.02281
FKBP10 FK506 binding protein 10, 65 kDa -0.020959
CAVIN1 caveolae associated protein 1 -0.0199499
VDAC1 voltage-dependent anion channel 1 -0.0195407
P4HA2 prolyl 4-hydroxylase, alpha polypeptide II -0.0194181
WSB1 WD repeat and SOCS box containing 1 -0.018239
RPL19 ribosomal protein L19 -0.0178111
ANKHD1 ankyrin repeat and KH domain containing 1 -0.0176542
SPDYA speedy/RINGO cell cycle regulator family member A -0.0176218
RPS13 ribosomal protein S13 -0.0175989
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0173751
GCC2 GRIP and coiled-coil domain containing 2 -0.0171711
RPLP1 ribosomal protein, large, P1 -0.0170502
RPL37 ribosomal protein L37 -0.0168107
COL7A1 collagen, type VII, alpha 1 -0.0167741
RPS6KC1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 -0.0164032
THOC2 THO complex 2 -0.0160915
NKTR natural killer cell triggering receptor -0.0159325
COL6A2 collagen, type VI, alpha 2 -0.0158269
RPL27A ribosomal protein L27a -0.0157464
TPM4 tropomyosin 4 -0.0157166
RPL31 ribosomal protein L31 -0.0150312
TMSB10 thymosin beta 10 -0.0149896
OGA O-GlcNAcase -0.0148659
RPL35A ribosomal protein L35a -0.014676
ANKRD11 ankyrin repeat domain 11 -0.0146701
MAP4 microtubule-associated protein 4 -0.0146259
HLA-C major histocompatibility complex, class I, C -0.0146052
TMEM41B transmembrane protein 41B -0.0143795
AOPEP aminopeptidase O (putative) -0.0143611
TTC17 tetratricopeptide repeat domain 17 -0.014178
IFIT2 interferon-induced protein with tetratricopeptide repeats 2 -0.0141593
CAPN2 calpain 2, (m/II) large subunit -0.0140593
TBCA tubulin folding cofactor A -0.0138975
LMNA lamin A/C -0.0138649
TRPC4AP transient receptor potential cation channel, subfamily C, member 4 associated protein -0.0137386
COL6A1 collagen, type VI, alpha 1 -0.0136307
COL5A1 collagen, type V, alpha 1 -0.0134414
SELENOK selenoprotein K -0.0130484
SNX14 sorting nexin 14 -0.0128054
RPS24 ribosomal protein S24 -0.0126303
AEBP2 AE binding protein 2 -0.0125669
RPS3 ribosomal protein S3 -0.0125648
PCNX4 pecanex 4 -0.0125531
CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 -0.0125108
FLOT1 flotillin 1 -0.0124591
SRBD1 S1 RNA binding domain 1 -0.0123883
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0123805
NOP56 NOP56 ribonucleoprotein -0.0123694
VCP valosin containing protein -0.0123133
CWF19L2 CWF19-like 2, cell cycle control (S. pombe) -0.0122961
TNPO1 transportin 1 -0.0122705
FNBP4 formin binding protein 4 -0.0122483
MAP3K2 mitogen-activated protein kinase kinase kinase 2 -0.0122392
STC2 stanniocalcin 2 -0.0121515
RPL13A ribosomal protein L13a -0.012146
STAU1 staufen double-stranded RNA binding protein 1 -0.0120903
RPS29 ribosomal protein S29 -0.0120735
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0120605
SAR1A secretion associated, Ras related GTPase 1A -0.0120395
AK1 adenylate kinase 1 -0.0118555
RALY RALY heterogeneous nuclear ribonucleoprotein -0.0118421
ERC1 ELKS/RAB6-interacting/CAST family member 1 -0.0117402
PTPRN2 protein tyrosine phosphatase, receptor type, N polypeptide 2 -0.0117095
COG5 component of oligomeric golgi complex 5 -0.0116449
CEP290 centrosomal protein 290kDa -0.01164
PUM3 pumilio RNA binding family member 3 -0.0116075
LUC7L3 LUC7-like 3 (S. cerevisiae) -0.0115675
FAF1 Fas (TNFRSF6) associated factor 1 -0.0114671
POTEF POTE ankyrin domain family, member F -0.0114252
NUP98 nucleoporin 98kDa -0.0113731
SHLD2 shieldin complex subunit 2 -0.0113319
MYL12A myosin, light chain 12A, regulatory, non-sarcomeric -0.0112975
XPOT exportin, tRNA -0.0112699
ARL6IP1 ADP-ribosylation factor-like 6 interacting protein 1 -0.0112651
CAP1 CAP, adenylate cyclase-associated protein 1 (yeast) -0.0112363
GPR173 G protein-coupled receptor 173 -0.0111805
RPL38 ribosomal protein L38 -0.0110947
TMEM14B transmembrane protein 14B -0.0110791
PHKB phosphorylase kinase, beta -0.0109386
RPS8 ribosomal protein S8 -0.0108904
DIP2A DIP2 disco-interacting protein 2 homolog A (Drosophila) -0.0108386
SPAG16 sperm associated antigen 16 -0.0107782
CFAP73 cilia and flagella associated protein 73 -0.0106399
MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase -0.0105959
PACS1 phosphofurin acidic cluster sorting protein 1 -0.0105598
SPARC secreted protein, acidic, cysteine-rich (osteonectin) -0.0105461