Baicalin_NCI-H460 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Baicalin perturbation in NCI-H460 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Baicalin_NCI-H460 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
PM20D1 peptidase M20 domain containing 1 0.20887
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.106591
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0861902
DST dystonin 0.0852511
SMOC1 SPARC related modular calcium binding 1 0.084416
INTS6 integrator complex subunit 6 0.0804192
VCL vinculin 0.0762931
PDE3A phosphodiesterase 3A, cGMP-inhibited 0.0757688
PRELID2 PRELI domain containing 2 0.0598616
SMAD2 SMAD family member 2 0.0534472
ZSWIM6 zinc finger, SWIM-type containing 6 0.0517722
SPOCK1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 0.0517695
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide 0.0503381
PLEKHA5 pleckstrin homology domain containing, family A member 5 0.0501189
CTIF CBP80/20-dependent translation initiation factor 0.0500323
PTPRM protein tyrosine phosphatase, receptor type, M 0.0490631
NALF1 NALCN channel auxiliary factor 1 0.0474383
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.0466204
MAML3 mastermind-like 3 (Drosophila) 0.0423025
DNER delta/notch-like EGF repeat containing 0.0421976
COL8A1 collagen, type VIII, alpha 1 0.0420681
CTBP2 C-terminal binding protein 2 0.0419446
FNDC3A fibronectin type III domain containing 3A 0.0419214
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.0398147
DENND1A DENN/MADD domain containing 1A 0.0395478
FLNA filamin A, alpha 0.0380093
FMNL2 formin-like 2 0.0377258
LSAMP limbic system-associated membrane protein 0.037344
EPHA4 EPH receptor A4 0.0367979
PCBP2 poly(rC) binding protein 2 0.0344629
GRB10 growth factor receptor-bound protein 10 0.0337955
CREB3L2 cAMP responsive element binding protein 3-like 2 0.0329127
NHS Nance-Horan syndrome (congenital cataracts and dental anomalies) 0.032493
PDE10A phosphodiesterase 10A 0.0319732
ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 0.0309578
SDK1 sidekick cell adhesion molecule 1 0.0297873
CAMTA1 calmodulin binding transcription activator 1 0.0293459
FNDC3B fibronectin type III domain containing 3B 0.0286117
OGDH oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 0.0277201
GPC6 glypican 6 0.0272338
AUTS2 autism susceptibility candidate 2 0.0270486
UNC5D unc-5 homolog D (C. elegans) 0.0266966
AEBP2 AE binding protein 2 0.0264628
NCOR2 nuclear receptor corepressor 2 0.0261501
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0261411
MARCHF1 membrane associated ring-CH-type finger 1 0.0259767
PDLIM5 PDZ and LIM domain 5 0.0258692
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 0.0250179
DOCK4 dedicator of cytokinesis 4 0.0245108
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0243366
PTEN phosphatase and tensin homolog 0.0241684
HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 0.0240055
RAD51B RAD51 paralog B 0.0238334
ADARB2 adenosine deaminase, RNA-specific, B2 (non-functional) 0.0237021
MCL1 myeloid cell leukemia 1 0.0236098
BMP6 bone morphogenetic protein 6 0.0232534
AKAP13 A kinase (PRKA) anchor protein 13 0.0232297
TRA2A transformer 2 alpha homolog (Drosophila) 0.0231696
SPAG9 sperm associated antigen 9 0.0227774
XYLT1 xylosyltransferase I 0.0227493
SQSTM1 sequestosome 1 0.0226997
RYR2 ryanodine receptor 2 (cardiac) 0.0225682
GLRX glutaredoxin (thioltransferase) 0.0224699
CDH13 cadherin 13 0.0224237
CNOT1 CCR4-NOT transcription complex, subunit 1 0.0222757
IRS2 insulin receptor substrate 2 0.0222142
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.0221376
NRXN3 neurexin 3 0.02177
TOP1 topoisomerase (DNA) I 0.0217621
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0217504
PMEPA1 prostate transmembrane protein, androgen induced 1 0.0217373
B4GALT1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 0.0216707
ADARB1 adenosine deaminase, RNA-specific, B1 0.0215568
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0214189
PGM2L1 phosphoglucomutase 2-like 1 0.0213893
GMDS GDP-mannose 4,6-dehydratase 0.0212578
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 0.0211418
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0211111
MYH9 myosin, heavy chain 9, non-muscle 0.0208288
ITPK1 inositol-tetrakisphosphate 1-kinase 0.0207453
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 0.0206463
COPA coatomer protein complex, subunit alpha 0.0205959
CADM2 cell adhesion molecule 2 0.0205801
MAFK v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K 0.020259
SOD2 superoxide dismutase 2, mitochondrial 0.0200718
RCOR1 REST corepressor 1 0.0200367
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 0.0200086
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0199392
HYCC1 hyccin PI4KA lipid kinase complex subunit 1 0.0199142
MKLN1 muskelin 1, intracellular mediator containing kelch motifs 0.019886
HDAC4 histone deacetylase 4 0.0198769
ZNF644 zinc finger protein 644 0.0195546
DSCAM Down syndrome cell adhesion molecule 0.019279
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 0.0190024
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 0.0187983
SLC38A2 solute carrier family 38, member 2 0.0183768
TMSB10 thymosin beta 10 0.0180041
RPSA ribosomal protein SA 0.0179356
CUX1 cut-like homeobox 1 0.0177483
LRPPRC leucine-rich pentatricopeptide repeat containing 0.0177127

decreased expression

Symbol Name Standardized Value
NAMPT nicotinamide phosphoribosyltransferase -0.20623
TXNRD1 thioredoxin reductase 1 -0.123461
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.114659
GDA guanine deaminase -0.105979
EFNA5 ephrin-A5 -0.105765
ASPH aspartate beta-hydroxylase -0.0954344
ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif, 6 -0.0899383
VIM vimentin -0.0806006
FN1 fibronectin 1 -0.0776515
TFPI2 tissue factor pathway inhibitor 2 -0.0769149
CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) -0.0746246
CD109 CD109 molecule -0.0745127
TMX4 thioredoxin-related transmembrane protein 4 -0.0700096
TM4SF1 transmembrane 4 L six family member 1 -0.0699674
PSD3 pleckstrin and Sec7 domain containing 3 -0.0674797
PCBP3 poly(rC) binding protein 3 -0.0631138
PLCB1 phospholipase C, beta 1 (phosphoinositide-specific) -0.0572795
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.0566502
SLC7A11 solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 -0.0565399
PTGR1 prostaglandin reductase 1 -0.0548844
PYGL phosphorylase, glycogen, liver -0.0545614
NEK7 NIMA-related kinase 7 -0.0529268
MFF mitochondrial fission factor -0.0518464
OSMR oncostatin M receptor -0.0518234
EPB41L3 erythrocyte membrane protein band 4.1-like 3 -0.0509646
SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 -0.0504071
PTPN12 protein tyrosine phosphatase, non-receptor type 12 -0.0501749
RASSF8 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 -0.0499824
SMYD3 SET and MYND domain containing 3 -0.049074
NRCAM neuronal cell adhesion molecule -0.0452194
RPS6 ribosomal protein S6 -0.0424354
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0423616
SLC39A8 solute carrier family 39 (zinc transporter), member 8 -0.042246
RTN4 reticulon 4 -0.0407538
LAMC1 laminin, gamma 1 (formerly LAMB2) -0.0403251
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.040096
TNPO1 transportin 1 -0.0396409
BMERB1 bMERB domain containing 1 -0.0369541
CTSL cathepsin L -0.0364708
PGK1 phosphoglycerate kinase 1 -0.0363689
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I -0.0350346
AKR1C1 aldo-keto reductase family 1, member C1 -0.0348274
INHBA inhibin, beta A -0.0346356
ZEB2 zinc finger E-box binding homeobox 2 -0.0345681
GRAMD1B GRAM domain containing 1B -0.0332836
ENAH enabled homolog (Drosophila) -0.0332646
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.0330311
TGFBI transforming growth factor, beta-induced, 68kDa -0.0327824
PJA2 praja ring finger 2, E3 ubiquitin protein ligase -0.0317501
LAMB1 laminin, beta 1 -0.0317257
GPAT3 glycerol-3-phosphate acyltransferase 3 -0.0311935
ZMYND8 zinc finger, MYND-type containing 8 -0.0308591
SAMD4A sterile alpha motif domain containing 4A -0.0306864
CTSC cathepsin C -0.0304038
TNFRSF19 tumor necrosis factor receptor superfamily, member 19 -0.0302352
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) -0.0300052
MKI67 marker of proliferation Ki-67 -0.0296788
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0295752
MAP3K20 mitogen-activated protein kinase kinase kinase 20 -0.0294826
CENPF centromere protein F, 350/400kDa -0.0294272
RPL36A ribosomal protein L36a -0.0293771
AGFG1 ArfGAP with FG repeats 1 -0.0291374
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 -0.0288903
ENO1 enolase 1, (alpha) -0.0287942
ANKRD28 ankyrin repeat domain 28 -0.0285276
ZBTB38 zinc finger and BTB domain containing 38 -0.0284213
IGFBP3 insulin-like growth factor binding protein 3 -0.0283468
RPL12 ribosomal protein L12 -0.0275481
ABCC2 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 -0.0274864
CDC42BPA CDC42 binding protein kinase alpha (DMPK-like) -0.0271158
S100A6 S100 calcium binding protein A6 -0.0266126
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0264618
IGF2BP3 insulin-like growth factor 2 mRNA binding protein 3 -0.0264499
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0264475
LPGAT1 lysophosphatidylglycerol acyltransferase 1 -0.0262795
NPAS2 neuronal PAS domain protein 2 -0.0257659
MT2A metallothionein 2A -0.0253324
EIF1 eukaryotic translation initiation factor 1 -0.0248029
ITPRID2 ITPR interacting domain containing 2 -0.0246277
CRLF2 cytokine receptor-like factor 2 -0.0245288
SLC44A1 solute carrier family 44 (choline transporter), member 1 -0.0240378
ESM1 endothelial cell-specific molecule 1 -0.0236473
MSANTD3 Myb/SANT-like DNA-binding domain containing 3 -0.0232013
RPS2 ribosomal protein S2 -0.0231298
CARD16 caspase recruitment domain family, member 16 -0.0230594
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) -0.0229936
PALLD palladin, cytoskeletal associated protein -0.0228141
CFLAR CASP8 and FADD-like apoptosis regulator -0.0226146
MYOF myoferlin -0.0225839
SCAF11 SR-related CTD-associated factor 11 -0.0225494
UBXN4 UBX domain protein 4 -0.0223702
RAI1 retinoic acid induced 1 -0.0223582
STC1 stanniocalcin 1 -0.0222374
SRGN serglycin -0.0222111
PRRC2C proline-rich coiled-coil 2C -0.0221711
KPNB1 karyopherin (importin) beta 1 -0.022121
SLC25A37 solute carrier family 25 (mitochondrial iron transporter), member 37 -0.0221147
SEPTIN10 septin 10 -0.0220098
PHF20 PHD finger protein 20 -0.0220085
UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked -0.0219808