Belinostat_A-427 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Belinostat perturbation in A-427 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Belinostat_A-427 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AREG amphiregulin 0.133141
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0945785
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0748411
SLC2A3 solute carrier family 2 (facilitated glucose transporter), member 3 0.0729806
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0480324
ANXA1 annexin A1 0.0462188
BIRC3 baculoviral IAP repeat containing 3 0.0455988
PCBP2 poly(rC) binding protein 2 0.0440498
YBX1 Y box binding protein 1 0.0406439
BIRC6 baculoviral IAP repeat containing 6 0.0362508
KIF5B kinesin family member 5B 0.0359507
CPOX coproporphyrinogen oxidase 0.035183
PDK4 pyruvate dehydrogenase kinase, isozyme 4 0.0351606
RPS2 ribosomal protein S2 0.0340276
EIF4A2 eukaryotic translation initiation factor 4A2 0.0325066
TPI1 triosephosphate isomerase 1 0.0323915
YBX3 Y box binding protein 3 0.0314551
KDM3A lysine (K)-specific demethylase 3A 0.0299996
NIPBL Nipped-B homolog (Drosophila) 0.0289935
FXR1 fragile X mental retardation, autosomal homolog 1 0.0289326
MARCHF6 membrane associated ring-CH-type finger 6 0.0281844
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0252731
KLHL24 kelch-like family member 24 0.0251809
PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 0.0251595
NCKAP1 NCK-associated protein 1 0.0250213
EEF1G eukaryotic translation elongation factor 1 gamma 0.0247847
TPR translocated promoter region, nuclear basket protein 0.024135
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 0.0219981
MEMO1 mediator of cell motility 1 0.0205795
P4HA1 prolyl 4-hydroxylase, alpha polypeptide I 0.0199831
ZNF292 zinc finger protein 292 0.0198841
GABARAPL1 GABA(A) receptor-associated protein like 1 0.0198248
PCM1 pericentriolar material 1 0.0197069
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0196585
PLK2 polo-like kinase 2 0.0193574
OGA O-GlcNAcase 0.0193201
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0192643
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0191702
SEC31A SEC31 homolog A (S. cerevisiae) 0.0189635
CCNL1 cyclin L1 0.0189449
NEK7 NIMA-related kinase 7 0.0188787
RPL12 ribosomal protein L12 0.0187615
MED13L mediator complex subunit 13-like 0.018736
NCOR1 nuclear receptor corepressor 1 0.018615
EDN1 endothelin 1 0.018491
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 0.018456
RPL26 ribosomal protein L26 0.0178137
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0176961
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.0176808
ADAM17 ADAM metallopeptidase domain 17 0.0175449
HMGB2 high mobility group box 2 0.0174392
SERINC1 serine incorporator 1 0.0174046
HSPA4 heat shock 70kDa protein 4 0.017321
BRWD3 bromodomain and WD repeat domain containing 3 0.017187
PPP3R1 protein phosphatase 3, regulatory subunit B, alpha 0.0171605
DSPP dentin sialophosphoprotein 0.0170834
AKAP9 A kinase (PRKA) anchor protein 9 0.0169928
PHF21A PHD finger protein 21A 0.0169899
GPBP1 GC-rich promoter binding protein 1 0.0169805
CLDND1 claudin domain containing 1 0.0168729
RB1CC1 RB1-inducible coiled-coil 1 0.0168271
UBA6 ubiquitin-like modifier activating enzyme 6 0.0168107
SPTBN1 spectrin, beta, non-erythrocytic 1 0.0167987
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) 0.0166967
ARRDC3 arrestin domain containing 3 0.0166228
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0165257
RPL7 ribosomal protein L7 0.0163536
VAPA VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa 0.0162934
CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 0.0161239
RAB1A RAB1A, member RAS oncogene family 0.0159177
USP53 ubiquitin specific peptidase 53 0.0158203
RLF rearranged L-myc fusion 0.0157834
SPAG9 sperm associated antigen 9 0.0156538
RPL13A ribosomal protein L13a 0.0156215
RAD21 RAD21 homolog (S. pombe) 0.0155354
PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha 0.0154299
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0154039
WAC WW domain containing adaptor with coiled-coil 0.0152849
KTN1 kinectin 1 (kinesin receptor) 0.0152664
TM4SF1 transmembrane 4 L six family member 1 0.0152563
BRWD1 bromodomain and WD repeat domain containing 1 0.0150969
KMT2E lysine (K)-specific methyltransferase 2E 0.0149606
RPLP0 ribosomal protein, large, P0 0.0146281
TAF1D TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa 0.0146053
RICTOR RPTOR independent companion of MTOR, complex 2 0.0145576
CXADR coxsackie virus and adenovirus receptor 0.0145375
YEATS2 YEATS domain containing 2 0.0145302
LPIN2 lipin 2 0.0144704
GSK3B glycogen synthase kinase 3 beta 0.0144521
FBXO11 F-box protein 11 0.0143206
ARHGAP12 Rho GTPase activating protein 12 0.014276
PTGES3 prostaglandin E synthase 3 (cytosolic) 0.0142362
SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 0.01423
MBD5 methyl-CpG binding domain protein 5 0.0140711
TENT2 terminal nucleotidyltransferase 2 0.0139413
NAMPT nicotinamide phosphoribosyltransferase 0.0139404
SFTPA2 surfactant protein A2 0.0139356
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0138818
TAX1BP1 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.0138652
YTHDC1 YTH domain containing 1 0.0137895

decreased expression

Symbol Name Standardized Value
TMSB10 thymosin beta 10 -0.140578
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.127427
NLGN1 neuroligin 1 -0.122751
HMGA2 high mobility group AT-hook 2 -0.0783884
VIM vimentin -0.0750519
SMURF2 SMAD specific E3 ubiquitin protein ligase 2 -0.0725883
SCD stearoyl-CoA desaturase (delta-9-desaturase) -0.0652336
YAP1 Yes-associated protein 1 -0.0580059
MMP12 matrix metallopeptidase 12 -0.05454
ACTG1 actin gamma 1 -0.0537749
NHSL1 NHS-like 1 -0.0524309
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.048273
LRRTM4 leucine rich repeat transmembrane neuronal 4 -0.0465276
PDE4D phosphodiesterase 4D, cAMP-specific -0.0447427
DLC1 DLC1 Rho GTPase activating protein -0.0402726
EGR1 early growth response 1 -0.0397688
RPL35A ribosomal protein L35a -0.0389461
JMJD1C jumonji domain containing 1C -0.0376718
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0361564
RASAL2 RAS protein activator like 2 -0.034428
CMIP c-Maf inducing protein -0.0341154
ROBO2 roundabout, axon guidance receptor, homolog 2 (Drosophila) -0.0339534
ZNF804A zinc finger protein 804A -0.033224
NR5A2 nuclear receptor subfamily 5, group A, member 2 -0.0315618
SLC38A2 solute carrier family 38, member 2 -0.0315026
CUX1 cut-like homeobox 1 -0.0305456
DPYD dihydropyrimidine dehydrogenase -0.0299149
SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -0.0287204
ITGBL1 integrin, beta-like 1 (with EGF-like repeat domains) -0.027838
RPS19 ribosomal protein S19 -0.0278209
EDARADD EDAR-associated death domain -0.0276657
RIMS2 regulating synaptic membrane exocytosis 2 -0.0273461
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.027261
PCDH7 protocadherin 7 -0.0271937
RERE arginine-glutamic acid dipeptide (RE) repeats -0.0268975
PDGFC platelet derived growth factor C -0.0263916
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 -0.0251788
EHBP1 EH domain binding protein 1 -0.0248854
MSRB3 methionine sulfoxide reductase B3 -0.0242698
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0230961
RAB7A RAB7A, member RAS oncogene family -0.0228861
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0220271
BCHE butyrylcholinesterase -0.0216597
L3MBTL4 l(3)mbt-like 4 (Drosophila) -0.0215915
MKI67 marker of proliferation Ki-67 -0.0210974
SPIDR scaffolding protein involved in DNA repair -0.0206437
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.020422
PMEPA1 prostate transmembrane protein, androgen induced 1 -0.0203921
NEBL nebulette -0.020102
AKAP12 A kinase (PRKA) anchor protein 12 -0.0198819
KIF18B kinesin family member 18B -0.0198115
NAV3 neuron navigator 3 -0.0196758
ERC1 ELKS/RAB6-interacting/CAST family member 1 -0.0191472
LOC102724023 ES1 protein homolog, mitochondrial -0.0185055
PFN1 profilin 1 -0.0183785
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0181045
VCL vinculin -0.0180601
KPNB1 karyopherin (importin) beta 1 -0.0178679
ZSWIM6 zinc finger, SWIM-type containing 6 -0.0178374
CEP112 centrosomal protein 112kDa -0.0178364
RPL37A ribosomal protein L37a -0.0177245
TUBA1B tubulin, alpha 1b -0.0174578
SERPINB2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 -0.0173185
IFIH1 interferon induced with helicase C domain 1 -0.0172525
S100A10 S100 calcium binding protein A10 -0.0171858
EGFR epidermal growth factor receptor -0.0170002
ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 -0.0169705
PRIM2 primase, DNA, polypeptide 2 (58kDa) -0.0166009
DIAPH2 diaphanous-related formin 2 -0.0165432
ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B -0.0164375
DNAH14 dynein, axonemal, heavy chain 14 -0.0161115
GNB1 guanine nucleotide binding protein (G protein), beta polypeptide 1 -0.0160993
OSMR oncostatin M receptor -0.016044
NPC1 Niemann-Pick disease, type C1 -0.0158561
TAS2R14 taste receptor, type 2, member 14 -0.0158242
R3HDM2 R3H domain containing 2 -0.0157948
STARD4 StAR-related lipid transfer (START) domain containing 4 -0.0154703
UBE2E2 ubiquitin-conjugating enzyme E2E 2 -0.0154282
COMMD10 COMM domain containing 10 -0.0152842
PDIA3 protein disulfide isomerase family A, member 3 -0.0151826
PHACTR4 phosphatase and actin regulator 4 -0.0151045
ANKRD12 ankyrin repeat domain 12 -0.0150337
LRMDA leucine rich melanocyte differentiation associated -0.0149011
SRRM2 serine/arginine repetitive matrix 2 -0.0145996
VTI1A vesicle transport through interaction with t-SNAREs 1A -0.0145696
FAF1 Fas (TNFRSF6) associated factor 1 -0.014419
ETV6 ets variant 6 -0.014391
ANKRD28 ankyrin repeat domain 28 -0.0142792
MAP1B microtubule-associated protein 1B -0.014048
RSU1 Ras suppressor protein 1 -0.0140311
SETX senataxin -0.0139909
MTAP methylthioadenosine phosphorylase -0.0139888
CENPF centromere protein F, 350/400kDa -0.0138264
P3H2 prolyl 3-hydroxylase 2 -0.013793
RPS6 ribosomal protein S6 -0.0136889
BRD4 bromodomain containing 4 -0.0136533
AK1 adenylate kinase 1 -0.0134935
HMGA1 high mobility group AT-hook 1 -0.0134195
DOCK1 dedicator of cytokinesis 1 -0.0134107
CDK6 cyclin-dependent kinase 6 -0.013382