Belinostat_NCI-H23 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Belinostat perturbation in NCI-H23 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Belinostat_NCI-H23 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
AKAP12 A kinase (PRKA) anchor protein 12 0.203245
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.184877
MCL1 myeloid cell leukemia 1 0.136718
YBX3 Y box binding protein 3 0.106524
PCBP2 poly(rC) binding protein 2 0.080198
EGR1 early growth response 1 0.074183
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.07136
RAD51B RAD51 paralog B 0.0658962
GAPDH glyceraldehyde-3-phosphate dehydrogenase 0.058922
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.055997
CANX calnexin 0.0549114
ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0.0520656
EXT1 exostosin glycosyltransferase 1 0.0511202
KPNA4 karyopherin alpha 4 (importin alpha 3) 0.0509317
TPM3 tropomyosin 3 0.050363
NCAPD2 non-SMC condensin I complex, subunit D2 0.0498796
ZBTB20 zinc finger and BTB domain containing 20 0.0496798
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0483217
BRD2 bromodomain containing 2 0.0481595
ACTR2 ARP2 actin-related protein 2 homolog (yeast) 0.0472384
TPI1 triosephosphate isomerase 1 0.0449753
GOLGB1 golgin B1 0.0440317
CSNK1A1 casein kinase 1, alpha 1 0.0439228
BPTF bromodomain PHD finger transcription factor 0.0435034
PRKDC protein kinase, DNA-activated, catalytic polypeptide 0.0434105
RRM2 ribonucleotide reductase M2 0.042863
KDM2A lysine (K)-specific demethylase 2A 0.0419696
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0418087
DNAJC5 DnaJ (Hsp40) homolog, subfamily C, member 5 0.0415612
EXOC4 exocyst complex component 4 0.0409831
PCLO piccolo presynaptic cytomatrix protein 0.0393795
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0389473
STK4 serine/threonine kinase 4 0.0386676
COPA coatomer protein complex, subunit alpha 0.0384737
CLTC clathrin, heavy chain (Hc) 0.0380043
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.0373727
EIF4G3 eukaryotic translation initiation factor 4 gamma, 3 0.0371101
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0362971
NABP1 nucleic acid binding protein 1 0.035269
SETD5 SET domain containing 5 0.0351664
ATRX alpha thalassemia/mental retardation syndrome X-linked 0.0350227
PYGL phosphorylase, glycogen, liver 0.0350043
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 0.0348576
BCLAF1 BCL2-associated transcription factor 1 0.0347795
WNK1 WNK lysine deficient protein kinase 1 0.0347354
EEF2 eukaryotic translation elongation factor 2 0.0338549
APLP2 amyloid beta (A4) precursor-like protein 2 0.0334133
ADIPOR2 adiponectin receptor 2 0.0330826
PTPN12 protein tyrosine phosphatase, non-receptor type 12 0.033033
CEP250 centrosomal protein 250kDa 0.0326571
RSF1 remodeling and spacing factor 1 0.0322902
ASH1L ash1 (absent, small, or homeotic)-like (Drosophila) 0.0320559
ZNF638 zinc finger protein 638 0.0318953
ERC1 ELKS/RAB6-interacting/CAST family member 1 0.0316935
FOS FBJ murine osteosarcoma viral oncogene homolog 0.0315096
PTK2 protein tyrosine kinase 2 0.0308292
STAG2 stromal antigen 2 0.0305609
UBR4 ubiquitin protein ligase E3 component n-recognin 4 0.0302772
ELL2 elongation factor, RNA polymerase II, 2 0.0301666
HDGF hepatoma-derived growth factor 0.0300549
UBC ubiquitin C 0.030049
ADAR adenosine deaminase, RNA-specific 0.0299987
WSB1 WD repeat and SOCS box containing 1 0.0299803
CDK19 cyclin-dependent kinase 19 0.029661
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 0.0296085
HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 0.0295833
TPM4 tropomyosin 4 0.0292145
PPME1 protein phosphatase methylesterase 1 0.0290679
YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon 0.029016
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 0.0289208
MSN moesin 0.028907
WDR70 WD repeat domain 70 0.0287507
EEF1G eukaryotic translation elongation factor 1 gamma 0.0284672
UBN2 ubinuclein 2 0.0280822
KTN1 kinectin 1 (kinesin receptor) 0.0280616
ANO6 anoctamin 6 0.0280222
DENR density-regulated protein 0.0278244
AFF3 AF4/FMR2 family, member 3 0.027635
GSK3B glycogen synthase kinase 3 beta 0.0273604
MKI67 marker of proliferation Ki-67 0.0269299
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0266999
RAPGEF6 Rap guanine nucleotide exchange factor (GEF) 6 0.0266756
GDI2 GDP dissociation inhibitor 2 0.026371
SUPT6H suppressor of Ty 6 homolog (S. cerevisiae) 0.0263671
HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) 0.0261301
SYNE2 spectrin repeat containing, nuclear envelope 2 0.0260463
CCNL1 cyclin L1 0.0259632
SPTAN1 spectrin, alpha, non-erythrocytic 1 0.0258539
MYH9 myosin, heavy chain 9, non-muscle 0.0256709
DIAPH3 diaphanous-related formin 3 0.0255445
GBE1 glucan (1,4-alpha-), branching enzyme 1 0.0252155
JMJD1C jumonji domain containing 1C 0.0250747
PRKN parkin RBR E3 ubiquitin protein ligase 0.0249543
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 0.0249104
SFTPA2 surfactant protein A2 0.0248135
DSPP dentin sialophosphoprotein 0.0247032
WASF2 WAS protein family, member 2 0.0246943
ZKSCAN1 zinc finger with KRAB and SCAN domains 1 0.0246609
TFPI2 tissue factor pathway inhibitor 2 0.0245931
FNIP1 folliculin interacting protein 1 0.0245468

decreased expression

Symbol Name Standardized Value
EIF5B eukaryotic translation initiation factor 5B -0.0896021
TRIO trio Rho guanine nucleotide exchange factor -0.0753101
MT2A metallothionein 2A -0.0717674
TMSB10 thymosin beta 10 -0.0676064
PTMA prothymosin, alpha -0.0565387
IGF1R insulin-like growth factor 1 receptor -0.0534598
RPS8 ribosomal protein S8 -0.051405
RPLP1 ribosomal protein, large, P1 -0.0490902
ATP11A ATPase, class VI, type 11A -0.047046
CAVIN1 caveolae associated protein 1 -0.0466156
RPS21 ribosomal protein S21 -0.045707
RPL26 ribosomal protein L26 -0.0431847
EFNA5 ephrin-A5 -0.0417564
RPL38 ribosomal protein L38 -0.040873
SLC16A1 solute carrier family 16 (monocarboxylate transporter), member 1 -0.0386403
RPL36 ribosomal protein L36 -0.0384333
PA2G4 proliferation-associated 2G4, 38kDa -0.038372
MYL12B myosin, light chain 12B, regulatory -0.0383193
LRRFIP1 leucine rich repeat (in FLII) interacting protein 1 -0.0378874
VIM vimentin -0.0378224
RPL35A ribosomal protein L35a -0.037558
FSCN1 fascin actin-bundling protein 1 -0.0375476
RPL9 ribosomal protein L9 -0.0354478
RPL17-C18ORF32 RPL17-C18orf32 readthrough -0.0351951
RPL27 ribosomal protein L27 -0.0346482
PDE10A phosphodiesterase 10A -0.0345989
RPL12 ribosomal protein L12 -0.0341215
TMEM165 transmembrane protein 165 -0.0338635
HMGA1 high mobility group AT-hook 1 -0.0335719
TOP1 topoisomerase (DNA) I -0.0332925
ATP5F1E ATP synthase F1 subunit epsilon -0.032272
RPL18 ribosomal protein L18 -0.0321632
KCNQ5 potassium channel, voltage gated KQT-like subfamily Q, member 5 -0.0320738
ACTG1 actin gamma 1 -0.0319614
NPR2 natriuretic peptide receptor 2 -0.0316223
PPM1L protein phosphatase, Mg2+/Mn2+ dependent, 1L -0.0309654
NFIA nuclear factor I/A -0.0306749
ATP1B3 ATPase, Na+/K+ transporting, beta 3 polypeptide -0.0306146
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) -0.0305192
RPS27A ribosomal protein S27a -0.0302859
ERRFI1 ERBB receptor feedback inhibitor 1 -0.0296906
RPL23 ribosomal protein L23 -0.0293251
BASP1 brain abundant, membrane attached signal protein 1 -0.0289639
RNF38 ring finger protein 38 -0.0288957
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 -0.0285912
SEMA3C sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C -0.0285911
DCUN1D4 DCN1, defective in cullin neddylation 1, domain containing 4 -0.0282769
RPS10 ribosomal protein S10 -0.0278284
SBNO1 strawberry notch homolog 1 (Drosophila) -0.0278178
LDHB lactate dehydrogenase B -0.0277768
HM13 histocompatibility (minor) 13 -0.0275527
RPLP2 ribosomal protein, large, P2 -0.0275354
SRSF11 serine/arginine-rich splicing factor 11 -0.0275041
LMNA lamin A/C -0.0273442
PPM1G protein phosphatase, Mg2+/Mn2+ dependent, 1G -0.0270941
SMAD3 SMAD family member 3 -0.0269457
NCOA7 nuclear receptor coactivator 7 -0.026768
KMT2C lysine (K)-specific methyltransferase 2C -0.0264741
ALCAM activated leukocyte cell adhesion molecule -0.0260772
SSH2 slingshot protein phosphatase 2 -0.0258025
RPL13A ribosomal protein L13a -0.0257995
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0257943
TM4SF1 transmembrane 4 L six family member 1 -0.0251835
RPL34 ribosomal protein L34 -0.0251793
NAP1L1 nucleosome assembly protein 1-like 1 -0.0251267
TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 -0.0249894
RPS19 ribosomal protein S19 -0.0248882
SINHCAF SIN3-HDAC complex associated factor -0.0247122
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0243999
S100A11 S100 calcium binding protein A11 -0.0242525
U2SURP U2 snRNP-associated SURP domain containing -0.0242088
GPHN gephyrin -0.0238354
RPL32 ribosomal protein L32 -0.0237933
RUSC2 RUN and SH3 domain containing 2 -0.0236954
EML4 echinoderm microtubule associated protein like 4 -0.0234117
TPM2 tropomyosin 2 (beta) -0.0233758
BSG basigin (Ok blood group) -0.0233517
CDK6 cyclin-dependent kinase 6 -0.0233181
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0232979
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0230508
CCL20 chemokine (C-C motif) ligand 20 -0.0230268
SLMAP sarcolemma associated protein -0.0228805
RBM25 RNA binding motif protein 25 -0.0226094
SEMA4B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B -0.0225814
DAAM1 dishevelled associated activator of morphogenesis 1 -0.0224818
COTL1 coactosin-like F-actin binding protein 1 -0.0223741
DCAF5 DDB1 and CUL4 associated factor 5 -0.0223041
RASAL2 RAS protein activator like 2 -0.0222067
RPL31 ribosomal protein L31 -0.0221512
GNAS GNAS complex locus -0.0221027
DNAJC2 DnaJ (Hsp40) homolog, subfamily C, member 2 -0.0220832
SYT1 synaptotagmin I -0.0219862
B2M beta-2-microglobulin -0.0219455
PDE8A phosphodiesterase 8A -0.0218503
RAI14 retinoic acid induced 14 -0.0217709
PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) -0.0217471
NXN nucleoredoxin -0.0216046
GPRC5A G protein-coupled receptor, class C, group 5, member A -0.0214298
FMNL2 formin-like 2 -0.021423
CHST11 carbohydrate (chondroitin 4) sulfotransferase 11 -0.0214042