Belinostat_SNU-1 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Belinostat perturbation in SNU-1 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Belinostat_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) 0.108937
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 0.107084
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 0.0929524
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0888954
SCD stearoyl-CoA desaturase (delta-9-desaturase) 0.0831749
MINDY2 MINDY lysine 48 deubiquitinase 2 0.0797026
ADAM10 ADAM metallopeptidase domain 10 0.0778355
GOLGA4 golgin A4 0.0674357
TMSB4X thymosin beta 4, X-linked 0.0593313
ZNF292 zinc finger protein 292 0.0534211
ZFAND3 zinc finger, AN1-type domain 3 0.0509365
EZR ezrin 0.0496681
PABPC1 poly(A) binding protein, cytoplasmic 1 0.0495265
KDM3A lysine (K)-specific demethylase 3A 0.0484516
NUP58 nucleoporin 58 0.0470718
EIF4A2 eukaryotic translation initiation factor 4A2 0.0458924
NAMPT nicotinamide phosphoribosyltransferase 0.0447246
AHNAK AHNAK nucleoprotein 0.0443573
RTN4 reticulon 4 0.04382
FLNB filamin B, beta 0.0432658
ECT2 epithelial cell transforming 2 0.0430665
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0427172
PGK1 phosphoglycerate kinase 1 0.0416132
EML4 echinoderm microtubule associated protein like 4 0.0412365
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0409815
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0409256
ELOVL5 ELOVL fatty acid elongase 5 0.0406567
NBAS neuroblastoma amplified sequence 0.0404054
P4HB prolyl 4-hydroxylase, beta polypeptide 0.0399053
HDLBP high density lipoprotein binding protein 0.0398772
HSPA9 heat shock 70kDa protein 9 (mortalin) 0.0388196
QKI QKI, KH domain containing, RNA binding 0.0378747
LDHA lactate dehydrogenase A 0.0363475
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0356434
GARS1 glycyl-tRNA synthetase 1 0.0355525
RBM39 RNA binding motif protein 39 0.0355072
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0352663
LOC112694756 uncharaterized LOC112694756 0.0351826
S100A6 S100 calcium binding protein A6 0.0350986
TMEM41B transmembrane protein 41B 0.0350237
CAMTA1 calmodulin binding transcription activator 1 0.0349602
DSCAM Down syndrome cell adhesion molecule 0.0347836
ROCK1 Rho-associated, coiled-coil containing protein kinase 1 0.0345605
NCKAP1 NCK-associated protein 1 0.0342446
TXNIP thioredoxin interacting protein 0.0339305
BIRC6 baculoviral IAP repeat containing 6 0.0335849
PPP2R2A protein phosphatase 2, regulatory subunit B, alpha 0.0335643
RNF145 ring finger protein 145 0.0334005
FBXO11 F-box protein 11 0.033122
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.0331003
GFPT1 glutamine--fructose-6-phosphate transaminase 1 0.0326785
CDC73 cell division cycle 73 0.0326671
KMT2E lysine (K)-specific methyltransferase 2E 0.0317973
CANX calnexin 0.0315617
RLF rearranged L-myc fusion 0.0310615
EEF2 eukaryotic translation elongation factor 2 0.0308453
TBL1XR1 transducin (beta)-like 1 X-linked receptor 1 0.0300836
WAC WW domain containing adaptor with coiled-coil 0.0291754
ZEB1 zinc finger E-box binding homeobox 1 0.0289507
NCOR1 nuclear receptor corepressor 1 0.0289159
ANK2 ankyrin 2, neuronal 0.0287563
SSBP2 single-stranded DNA binding protein 2 0.0287089
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0286765
SLMAP sarcolemma associated protein 0.0285545
CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) 0.0283201
USP3 ubiquitin specific peptidase 3 0.0278552
CALU calumenin 0.027701
CNOT6L CCR4-NOT transcription complex, subunit 6-like 0.0273678
EPRS1 glutamyl-prolyl-tRNA synthetase 1 0.0271908
UBA6 ubiquitin-like modifier activating enzyme 6 0.0270154
PTMA prothymosin, alpha 0.0268072
SPAG9 sperm associated antigen 9 0.0267034
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.0266869
ARID4B AT rich interactive domain 4B (RBP1-like) 0.026426
TTC3 tetratricopeptide repeat domain 3 0.026411
PARD3 par-3 family cell polarity regulator 0.026297
YTHDC1 YTH domain containing 1 0.0262825
OGA O-GlcNAcase 0.0261324
PCBP2 poly(rC) binding protein 2 0.0261276
COG5 component of oligomeric golgi complex 5 0.0260905
SMNDC1 survival motor neuron domain containing 1 0.0257428
PNISR PNN-interacting serine/arginine-rich protein 0.0256984
CALR calreticulin 0.0255825
GSK3B glycogen synthase kinase 3 beta 0.0255507
TXNRD1 thioredoxin reductase 1 0.0252963
ZMYM2 zinc finger, MYM-type 2 0.0252243
GNPDA1 glucosamine-6-phosphate deaminase 1 0.0251093
PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform 0.0250903
TFG TRK-fused gene 0.0250631
ADAM9 ADAM metallopeptidase domain 9 0.0246672
XPO1 exportin 1 0.024488
PICALM phosphatidylinositol binding clathrin assembly protein 0.0241876
RAB6A RAB6A, member RAS oncogene family 0.0240649
BRWD1 bromodomain and WD repeat domain containing 1 0.0239921
TOP2B topoisomerase (DNA) II beta 180kDa 0.0237277
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0236863
PPP3CA protein phosphatase 3, catalytic subunit, alpha isozyme 0.0236836
CD47 CD47 molecule 0.0235791
EEF1G eukaryotic translation elongation factor 1 gamma 0.0235554
SREBF2 sterol regulatory element binding transcription factor 2 0.0235042

decreased expression

Symbol Name Standardized Value
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.0871084
PDE4B phosphodiesterase 4B, cAMP-specific -0.0740387
RPL35A ribosomal protein L35a -0.0704551
B3GALT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 -0.0643228
TPT1 tumor protein, translationally-controlled 1 -0.0584017
FOXP1 forkhead box P1 -0.0527857
BMP10 bone morphogenetic protein 10 -0.051344
RPS8 ribosomal protein S8 -0.0450557
RPL31 ribosomal protein L31 -0.0439439
RPS6 ribosomal protein S6 -0.0400506
RPL37A ribosomal protein L37a -0.0371215
TMSB10 thymosin beta 10 -0.0330996
PKM pyruvate kinase, muscle -0.0326706
DIAPH3 diaphanous-related formin 3 -0.0310111
RPL9 ribosomal protein L9 -0.030505
MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like -0.0283002
RPS25 ribosomal protein S25 -0.0275135
CPED1 cadherin-like and PC-esterase domain containing 1 -0.0273919
LOC102724023 ES1 protein homolog, mitochondrial -0.0272448
IGF2 insulin-like growth factor 2 -0.0268103
VIM vimentin -0.026621
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 -0.0263053
DLG1 discs, large homolog 1 (Drosophila) -0.0260483
TOP2A topoisomerase (DNA) II alpha 170kDa -0.0248289
GLI3 GLI family zinc finger 3 -0.0239438
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0238945
RPS12 ribosomal protein S12 -0.0236646
RPLP1 ribosomal protein, large, P1 -0.0234933
MKI67 marker of proliferation Ki-67 -0.0228123
RPS19 ribosomal protein S19 -0.0226851
SMC4 structural maintenance of chromosomes 4 -0.0215416
RPS23 ribosomal protein S23 -0.0212769
INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa -0.020671
TUBA1B tubulin, alpha 1b -0.0206448
NPAS2 neuronal PAS domain protein 2 -0.020624
RPS14 ribosomal protein S14 -0.0203597
GSE1 Gse1 coiled-coil protein -0.0203527
RPLP2 ribosomal protein, large, P2 -0.0201144
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0200404
CUX1 cut-like homeobox 1 -0.0198985
RPL36A ribosomal protein L36a -0.0198554
S100A4 S100 calcium binding protein A4 -0.0198553
RPS17 ribosomal protein S17 -0.0198095
NUCKS1 nuclear casein kinase and cyclin-dependent kinase substrate 1 -0.019639
NAV2 neuron navigator 2 -0.0195819
HSPB1 heat shock 27kDa protein 1 -0.0193543
RPL7A ribosomal protein L7a -0.0191302
CRPPA CDP-L-ribitol pyrophosphorylase A -0.0188867
RPL34 ribosomal protein L34 -0.0182707
EMP3 epithelial membrane protein 3 -0.0182127
UNC13A unc-13 homolog A (C. elegans) -0.0182104
FTL ferritin, light polypeptide -0.0179167
ARL4C ADP-ribosylation factor-like 4C -0.0178158
RPS13 ribosomal protein S13 -0.0175127
RPS24 ribosomal protein S24 -0.0171676
YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta -0.0169321
TUBB4B tubulin, beta 4B class IVb -0.0168333
PPDPF pancreatic progenitor cell differentiation and proliferation factor -0.0161819
POTEF POTE ankyrin domain family, member F -0.01546
S100A10 S100 calcium binding protein A10 -0.0154484
RPS3 ribosomal protein S3 -0.0153555
CENPF centromere protein F, 350/400kDa -0.0151812
TMEM158 transmembrane protein 158 (gene/pseudogene) -0.0150581
RPL23 ribosomal protein L23 -0.0149455
CALM1 calmodulin 1 (phosphorylase kinase, delta) -0.0148678
RPL37 ribosomal protein L37 -0.014827
MACROD2 MACRO domain containing 2 -0.0147357
EGFR epidermal growth factor receptor -0.0146753
STMN1 stathmin 1 -0.0146013
PCNX4 pecanex 4 -0.0145576
ITGA10 integrin, alpha 10 -0.0144073
CCND1 cyclin D1 -0.0138348
TMBIM1 transmembrane BAX inhibitor motif containing 1 -0.0137087
NDRG1 N-myc downstream regulated 1 -0.0135933
FHIT fragile histidine triad -0.0135366
DHRSX dehydrogenase/reductase (SDR family) X-linked -0.0133597
TNFRSF11B tumor necrosis factor receptor superfamily, member 11b -0.0133386
UQCRB ubiquinol-cytochrome c reductase binding protein -0.0131841
AKAP12 A kinase (PRKA) anchor protein 12 -0.0131417
CEP112 centrosomal protein 112kDa -0.0130206
S100A9 S100 calcium binding protein A9 -0.0128933
RPL30 ribosomal protein L30 -0.0127657
GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 -0.0126504
SLC1A3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 -0.0126078
ZMYND8 zinc finger, MYND-type containing 8 -0.0125809
AEBP2 AE binding protein 2 -0.0125367
SERPINE1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 -0.0124988
IFITM3 interferon induced transmembrane protein 3 -0.0124238
TAS2R14 taste receptor, type 2, member 14 -0.0124144
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 -0.0123737
PMEPA1 prostate transmembrane protein, androgen induced 1 -0.0123732
RPS15 ribosomal protein S15 -0.0122756
PFN1 profilin 1 -0.012254
HMGB1 high mobility group box 1 -0.0122159
NFE2L2 nuclear factor, erythroid 2-like 2 -0.0121792
RPL28 ribosomal protein L28 -0.0121484
FER1L6 fer-1-like family member 6 -0.0121279
N4BP2L2 NEDD4 binding protein 2-like 2 -0.0120732
RPL10A ribosomal protein L10a -0.0120178
BABAM2 BRISC and BRCA1 A complex member 2 -0.0119969