Bendamustine_NCI-H1792 Gene Set

Dataset Tahoe Therapeutics Tahoe 100M Perturbation Atlas
Category transcriptomics
Type cell type
Description Bendamustine perturbation in NCI-H1792 cell line (Tahoe Therapeutics)
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Genes

200 genes differentially expressed following the Bendamustine_NCI-H1792 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.

increased expression

Symbol Name Standardized Value
POTEF POTE ankyrin domain family, member F 0.0898878
PCBP2 poly(rC) binding protein 2 0.0865821
HSP90AB1 heat shock protein 90kDa alpha (cytosolic), class B member 1 0.0810847
ITPR1 inositol 1,4,5-trisphosphate receptor, type 1 0.0772003
CAMK1D calcium/calmodulin-dependent protein kinase ID 0.0730739
FTH1 ferritin, heavy polypeptide 1 0.0715451
CDH13 cadherin 13 0.0555508
FN1 fibronectin 1 0.054986
HSP90AA1 heat shock protein 90kDa alpha (cytosolic), class A member 1 0.053553
ATP13A3 ATPase type 13A3 0.0484579
WAC WW domain containing adaptor with coiled-coil 0.0467868
MEF2A myocyte enhancer factor 2A 0.0462436
RBPJ recombination signal binding protein for immunoglobulin kappa J region 0.0453477
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 0.0430805
FAM20C family with sequence similarity 20, member C 0.0419407
UBA6 ubiquitin-like modifier activating enzyme 6 0.0398961
PTK2 protein tyrosine kinase 2 0.0393262
CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa 0.0392496
PGK1 phosphoglycerate kinase 1 0.0383903
QKI QKI, KH domain containing, RNA binding 0.0356416
MYH9 myosin, heavy chain 9, non-muscle 0.0354035
TNIP1 TNFAIP3 interacting protein 1 0.0344803
RNF145 ring finger protein 145 0.0344009
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 0.0343378
GPRC5A G protein-coupled receptor, class C, group 5, member A 0.0342039
YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma 0.0330527
ANKRD11 ankyrin repeat domain 11 0.0330463
RAB8B RAB8B, member RAS oncogene family 0.0319326
KTN1 kinectin 1 (kinesin receptor) 0.0314467
KDM1A lysine (K)-specific demethylase 1A 0.0314459
ARL8B ADP-ribosylation factor-like 8B 0.031382
PICALM phosphatidylinositol binding clathrin assembly protein 0.0313156
PKM pyruvate kinase, muscle 0.0312913
NAP1L1 nucleosome assembly protein 1-like 1 0.0312781
BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa 0.03106
RNASE1 ribonuclease, RNase A family, 1 (pancreatic) 0.0310445
DHX15 DEAH (Asp-Glu-Ala-His) box helicase 15 0.0310314
ICAM1 intercellular adhesion molecule 1 0.0303226
BHLHE40 basic helix-loop-helix family, member e40 0.0297716
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 0.0296542
XPO1 exportin 1 0.0293804
UBR5 ubiquitin protein ligase E3 component n-recognin 5 0.0292835
NFKBIA nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.0287264
PPP1R15A protein phosphatase 1, regulatory subunit 15A 0.0286364
CCNY cyclin Y 0.0285522
GRB10 growth factor receptor-bound protein 10 0.0284025
ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 0.0282368
PDK3 pyruvate dehydrogenase kinase, isozyme 3 0.0281358
NUP58 nucleoporin 58 0.0279921
ENO1 enolase 1, (alpha) 0.0279863
RPL3 ribosomal protein L3 0.0278501
AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.027357
NFAT5 nuclear factor of activated T-cells 5, tonicity-responsive 0.0272607
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 0.0269584
BCAT1 branched chain amino-acid transaminase 1, cytosolic 0.0267294
ADM adrenomedullin 0.0263579
EIF3B eukaryotic translation initiation factor 3, subunit B 0.026343
MAP2K1 mitogen-activated protein kinase kinase 1 0.0262506
RAB21 RAB21, member RAS oncogene family 0.0261431
MATR3 matrin 3 0.0255733
ANO6 anoctamin 6 0.0254479
FAM13A family with sequence similarity 13, member A 0.0251821
TMTC1 transmembrane and tetratricopeptide repeat containing 1 0.0251259
CTNNBL1 catenin, beta like 1 0.0248838
ERO1A endoplasmic reticulum oxidoreductase 1 alpha 0.0248026
CHD1L chromodomain helicase DNA binding protein 1-like 0.0247548
EIF2AK2 eukaryotic translation initiation factor 2-alpha kinase 2 0.0247394
HILPDA hypoxia inducible lipid droplet-associated 0.0244695
HELZ helicase with zinc finger 0.024393
DST dystonin 0.024327
ECPAS Ecm29 proteasome adaptor and scaffold 0.0243019
INSIG2 insulin induced gene 2 0.024171
UBA2 ubiquitin-like modifier activating enzyme 2 0.0239607
MYO1B myosin IB 0.0238151
HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 0.023408
AKAP13 A kinase (PRKA) anchor protein 13 0.0232371
PARP8 poly (ADP-ribose) polymerase family, member 8 0.0229961
GPBP1 GC-rich promoter binding protein 1 0.0228885
COL7A1 collagen, type VII, alpha 1 0.0227504
CA12 carbonic anhydrase XII 0.0227393
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 0.0226194
FBN1 fibrillin 1 0.0225348
ITGB3 integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) 0.0224014
BNIP3L BCL2/adenovirus E1B 19kDa interacting protein 3-like 0.0223667
HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3 0.0223594
HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) 0.0222032
HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase 0.022164
GARS1 glycyl-tRNA synthetase 1 0.0218686
SLC5A3 solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 0.0218394
RIOK3 RIO kinase 3 0.0215949
SERPINE2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 0.0215839
PIAS2 protein inhibitor of activated STAT, 2 0.0214827
SKIC3 SKI3 subunit of superkiller complex 0.0214779
MSN moesin 0.0214212
FMNL2 formin-like 2 0.0214032
TIMP3 TIMP metallopeptidase inhibitor 3 0.0213824
LRRFIP2 leucine rich repeat (in FLII) interacting protein 2 0.0213554
CXCL5 chemokine (C-X-C motif) ligand 5 0.021088
TRIO trio Rho guanine nucleotide exchange factor 0.0210819
HNRNPR heterogeneous nuclear ribonucleoprotein R 0.0209976

decreased expression

Symbol Name Standardized Value
GAPDH glyceraldehyde-3-phosphate dehydrogenase -0.224834
CD55 CD55 molecule, decay accelerating factor for complement (Cromer blood group) -0.147212
CD44 CD44 molecule (Indian blood group) -0.137263
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 -0.126945
NAMPT nicotinamide phosphoribosyltransferase -0.122549
TMSB10 thymosin beta 10 -0.100211
OSMR oncostatin M receptor -0.091256
EFNA5 ephrin-A5 -0.0772019
NCOA7 nuclear receptor coactivator 7 -0.0677107
BASP1 brain abundant, membrane attached signal protein 1 -0.0664623
GLCCI1 glucocorticoid induced 1 -0.0661976
RBMS3 RNA binding motif, single stranded interacting protein 3 -0.063666
SIPA1L1 signal-induced proliferation-associated 1 like 1 -0.0610158
RBM39 RNA binding motif protein 39 -0.0575912
MT2A metallothionein 2A -0.056598
PDE4D phosphodiesterase 4D, cAMP-specific -0.0554631
CANX calnexin -0.0530382
KLF6 Kruppel-like factor 6 -0.0506534
H1-0 H1.0 linker histone -0.0502133
SEC31A SEC31 homolog A (S. cerevisiae) -0.0483872
ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase -0.0478173
HSPA5 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) -0.0467526
AKAP9 A kinase (PRKA) anchor protein 9 -0.0460267
ZMYND8 zinc finger, MYND-type containing 8 -0.0449633
SPRED2 sprouty-related, EVH1 domain containing 2 -0.0444967
ZBTB20 zinc finger and BTB domain containing 20 -0.0444271
USP34 ubiquitin specific peptidase 34 -0.0441506
BPTF bromodomain PHD finger transcription factor -0.0434958
TMEM263 transmembrane protein 263 -0.0433751
NPC1 Niemann-Pick disease, type C1 -0.0426935
NTN4 netrin 4 -0.0425398
GOLGA4 golgin A4 -0.041657
RPS19 ribosomal protein S19 -0.0414195
PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 -0.0412216
TFPI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) -0.0411991
SBF2 SET binding factor 2 -0.0395783
RPLP1 ribosomal protein, large, P1 -0.0391689
LMAN1 lectin, mannose-binding, 1 -0.0386189
IER3 immediate early response 3 -0.0382432
FTL ferritin, light polypeptide -0.0375169
AHNAK AHNAK nucleoprotein -0.0369876
C15ORF48 chromosome 15 open reading frame 48 -0.0365133
IMMP2L IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) -0.0364614
CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 -0.0363869
NRP1 neuropilin 1 -0.0363254
IQGAP1 IQ motif containing GTPase activating protein 1 -0.0353451
KDM2A lysine (K)-specific demethylase 2A -0.0351676
EGR1 early growth response 1 -0.0350803
CXCL8 chemokine (C-X-C motif) ligand 8 -0.0340562
RAB1A RAB1A, member RAS oncogene family -0.0337691
ELL2 elongation factor, RNA polymerase II, 2 -0.0337146
HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) -0.0334849
EIF1 eukaryotic translation initiation factor 1 -0.0334644
KYNU kynureninase -0.0333648
RAD51B RAD51 paralog B -0.0332139
GCC2 GRIP and coiled-coil domain containing 2 -0.0323381
ARHGAP5 Rho GTPase activating protein 5 -0.0320288
EXT1 exostosin glycosyltransferase 1 -0.0319586
RB1CC1 RB1-inducible coiled-coil 1 -0.0312828
P4HB prolyl 4-hydroxylase, beta polypeptide -0.0310466
IFI16 interferon, gamma-inducible protein 16 -0.030296
DAAM1 dishevelled associated activator of morphogenesis 1 -0.0302608
ANKRD17 ankyrin repeat domain 17 -0.0302216
RAB5A RAB5A, member RAS oncogene family -0.0296847
MYO9A myosin IXA -0.0294779
SYAP1 synapse associated protein 1 -0.0293946
ZEB2 zinc finger E-box binding homeobox 2 -0.0292751
RPL35A ribosomal protein L35a -0.0291386
BRIP1 BRCA1 interacting protein C-terminal helicase 1 -0.0291191
SDK1 sidekick cell adhesion molecule 1 -0.0289743
TM4SF1 transmembrane 4 L six family member 1 -0.0283648
PRELID2 PRELI domain containing 2 -0.0283229
CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1 -0.0281845
ZSWIM6 zinc finger, SWIM-type containing 6 -0.027816
PABPC1 poly(A) binding protein, cytoplasmic 1 -0.0273568
ANKRD28 ankyrin repeat domain 28 -0.0269782
RPL32 ribosomal protein L32 -0.0267662
MAML2 mastermind-like 2 (Drosophila) -0.0266533
MORF4L2 mortality factor 4 like 2 -0.0264637
OGA O-GlcNAcase -0.0257549
NIPBL Nipped-B homolog (Drosophila) -0.0257151
ZFP91 ZFP91 zinc finger protein -0.0254397
ZC3H12C zinc finger CCCH-type containing 12C -0.0251941
CCDC88A coiled-coil domain containing 88A -0.0251173
LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 -0.0250849
SERPINB9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 -0.025064
BTG1 B-cell translocation gene 1, anti-proliferative -0.0250387
HEG1 heart development protein with EGF-like domains 1 -0.0249518
MON2 MON2 homolog (S. cerevisiae) -0.0249505
SEMA3A sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A -0.0249135
MYO1E myosin IE -0.0248661
ZBTB38 zinc finger and BTB domain containing 38 -0.0248611
AOPEP aminopeptidase O (putative) -0.024796
AKAP12 A kinase (PRKA) anchor protein 12 -0.0247691
CSNK1A1 casein kinase 1, alpha 1 -0.024391
RPS24 ribosomal protein S24 -0.0243572
RPL23 ribosomal protein L23 -0.0243404
NDRG1 N-myc downstream regulated 1 -0.0242446
SEC22A SEC22 vesicle trafficking protein homolog A (S. cerevisiae) -0.0242
MARCKS myristoylated alanine-rich protein kinase C substrate -0.0240019