| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine (dihydrochloride) perturbation in LOX-IMVI cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine (dihydrochloride)_LOX-IMVI drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| DTNA | dystrobrevin, alpha | 0.113952 |
| EFNA5 | ephrin-A5 | 0.0943054 |
| PLEC | plectin | 0.0385463 |
| FLNA | filamin A, alpha | 0.0374377 |
| PRKCE | protein kinase C, epsilon | 0.0363537 |
| SAMD4A | sterile alpha motif domain containing 4A | 0.0336726 |
| TEAD1 | TEA domain family member 1 (SV40 transcriptional enhancer factor) | 0.0319829 |
| LOC112694756 | uncharaterized LOC112694756 | 0.0286834 |
| TRIO | trio Rho guanine nucleotide exchange factor | 0.0278077 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0275547 |
| RUNX1 | runt-related transcription factor 1 | 0.0260553 |
| EXT1 | exostosin glycosyltransferase 1 | 0.0243303 |
| LSAMP | limbic system-associated membrane protein | 0.0242854 |
| MGAT5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | 0.0221966 |
| PRKG1 | protein kinase, cGMP-dependent, type I | 0.0212569 |
| HIVEP2 | human immunodeficiency virus type I enhancer binding protein 2 | 0.0207013 |
| LIMCH1 | LIM and calponin homology domains 1 | 0.0197751 |
| PHACTR1 | phosphatase and actin regulator 1 | 0.0189648 |
| PRRC2A | proline-rich coiled-coil 2A | 0.0189112 |
| EEF2 | eukaryotic translation elongation factor 2 | 0.0186389 |
| ZCCHC7 | zinc finger, CCHC domain containing 7 | 0.0181445 |
| MARCHF4 | membrane associated ring-CH-type finger 4 | 0.017612 |
| HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | 0.0170697 |
| FGFR1 | fibroblast growth factor receptor 1 | 0.0168454 |
| PPFIA1 | protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 | 0.016698 |
| SLC8A1 | solute carrier family 8 (sodium/calcium exchanger), member 1 | 0.0164636 |
| ADAMTS6 | ADAM metallopeptidase with thrombospondin type 1 motif, 6 | 0.0154919 |
| INTS6 | integrator complex subunit 6 | 0.0153933 |
| NBAS | neuroblastoma amplified sequence | 0.015073 |
| BNIP3 | BCL2/adenovirus E1B 19kDa interacting protein 3 | 0.0149289 |
| YEATS2 | YEATS domain containing 2 | 0.0146108 |
| SUPT3H | suppressor of Ty 3 homolog (S. cerevisiae) | 0.0144911 |
| KDM3A | lysine (K)-specific demethylase 3A | 0.0143164 |
| KDM4B | lysine (K)-specific demethylase 4B | 0.0140961 |
| PPP1R15A | protein phosphatase 1, regulatory subunit 15A | 0.0140746 |
| HOOK2 | hook microtubule-tethering protein 2 | 0.0137737 |
| FMNL2 | formin-like 2 | 0.0136111 |
| WDR45B | WD repeat domain 45B | 0.0135779 |
| HSPA8 | heat shock 70kDa protein 8 | 0.0134449 |
| CTIF | CBP80/20-dependent translation initiation factor | 0.0130255 |
| MSI2 | musashi RNA-binding protein 2 | 0.0127267 |
| ZNF638 | zinc finger protein 638 | 0.0126974 |
| MYO10 | myosin X | 0.0126821 |
| AGO2 | argonaute RISC catalytic component 2 | 0.012551 |
| RPL3 | ribosomal protein L3 | 0.0125343 |
| AEBP2 | AE binding protein 2 | 0.0125125 |
| CFAP251 | cilia and flagella associated protein 251 | 0.0123583 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0123529 |
| IGF2BP2 | insulin-like growth factor 2 mRNA binding protein 2 | 0.0123421 |
| FLNC | filamin C, gamma | 0.0123302 |
| EIF4H | eukaryotic translation initiation factor 4H | 0.0122965 |
| ADAM32 | ADAM metallopeptidase domain 32 | 0.0121572 |
| CCDC200 | coiled-coil domain containing 200 | 0.0121296 |
| RPTOR | regulatory associated protein of MTOR, complex 1 | 0.0121147 |
| PRELID2 | PRELI domain containing 2 | 0.0118819 |
| SAFB2 | scaffold attachment factor B2 | 0.0118237 |
| IRS2 | insulin receptor substrate 2 | 0.0116172 |
| PPP6R3 | protein phosphatase 6, regulatory subunit 3 | 0.0115728 |
| PFKP | phosphofructokinase, platelet | 0.0111216 |
| KLHL29 | kelch-like family member 29 | 0.0109858 |
| ARHGAP32 | Rho GTPase activating protein 32 | 0.0107168 |
| ARHGEF10 | Rho guanine nucleotide exchange factor (GEF) 10 | 0.0105273 |
| PFKFB3 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 | 0.0105016 |
| CTBP2 | C-terminal binding protein 2 | 0.0104469 |
| GRAMD1B | GRAM domain containing 1B | 0.0102154 |
| SLC6A6 | solute carrier family 6 (neurotransmitter transporter), member 6 | 0.0101987 |
| FOXO3 | forkhead box O3 | 0.0101819 |
| AFDN | afadin, adherens junction formation factor | 0.0100801 |
| SAMD3 | sterile alpha motif domain containing 3 | 0.0100057 |
| OGT | O-linked N-acetylglucosamine (GlcNAc) transferase | 0.00976999 |
| TRIM44 | tripartite motif containing 44 | 0.00974167 |
| DOCK1 | dedicator of cytokinesis 1 | 0.0097103 |
| DGKI | diacylglycerol kinase, iota | 0.00964764 |
| PBX3 | pre-B-cell leukemia homeobox 3 | 0.00962818 |
| ITPR2 | inositol 1,4,5-trisphosphate receptor, type 2 | 0.00955805 |
| MAD1L1 | MAD1 mitotic arrest deficient-like 1 (yeast) | 0.00932358 |
| AGAP1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | 0.00929945 |
| SDCCAG8 | serologically defined colon cancer antigen 8 | 0.00928964 |
| PDIA5 | protein disulfide isomerase family A, member 5 | 0.0091997 |
| NCOR2 | nuclear receptor corepressor 2 | 0.00907341 |
| BACE2 | beta-site APP-cleaving enzyme 2 | 0.00904796 |
| NTM | neurotrimin | 0.00899045 |
| KDM4C | lysine (K)-specific demethylase 4C | 0.00898221 |
| KMT2D | lysine (K)-specific methyltransferase 2D | 0.00895956 |
| UBE3C | ubiquitin protein ligase E3C | 0.00888919 |
| CHD7 | chromodomain helicase DNA binding protein 7 | 0.0088822 |
| GNPDA1 | glucosamine-6-phosphate deaminase 1 | 0.00860537 |
| KMT2C | lysine (K)-specific methyltransferase 2C | 0.00855895 |
| RASA3 | RAS p21 protein activator 3 | 0.00855685 |
| EPG5 | ectopic P-granules autophagy protein 5 homolog (C. elegans) | 0.00848068 |
| TFRC | transferrin receptor | 0.00844982 |
| DENND1A | DENN/MADD domain containing 1A | 0.00828963 |
| EP400 | E1A binding protein p400 | 0.00826632 |
| LRCH1 | leucine-rich repeats and calponin homology (CH) domain containing 1 | 0.00819422 |
| PFKFB4 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 | 0.00817665 |
| TIAM2 | T-cell lymphoma invasion and metastasis 2 | 0.00799443 |
| USP34 | ubiquitin specific peptidase 34 | 0.00797504 |
| SND1 | staphylococcal nuclease and tudor domain containing 1 | 0.00791452 |
| KCNMA1 | potassium channel, calcium activated large conductance subfamily M alpha, member 1 | 0.00788524 |
| MPRIP | myosin phosphatase Rho interacting protein | 0.00771246 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.440661 |
| VIM | vimentin | -0.333293 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | -0.142616 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | -0.125356 |
| RPS6 | ribosomal protein S6 | -0.105531 |
| TMSB10 | thymosin beta 10 | -0.102109 |
| PTMA | prothymosin, alpha | -0.0905224 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0676925 |
| ALCAM | activated leukocyte cell adhesion molecule | -0.064486 |
| RTN4 | reticulon 4 | -0.063101 |
| TPT1 | tumor protein, translationally-controlled 1 | -0.0618889 |
| CD44 | CD44 molecule (Indian blood group) | -0.060808 |
| CALM1 | calmodulin 1 (phosphorylase kinase, delta) | -0.0538084 |
| RPLP0 | ribosomal protein, large, P0 | -0.0520612 |
| PLEKHA5 | pleckstrin homology domain containing, family A member 5 | -0.0513583 |
| HMGA1 | high mobility group AT-hook 1 | -0.049297 |
| VCL | vinculin | -0.0492575 |
| JMJD1C | jumonji domain containing 1C | -0.0448602 |
| MMP12 | matrix metallopeptidase 12 | -0.0437733 |
| ACTG1 | actin gamma 1 | -0.0432937 |
| YWHAZ | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta | -0.0421371 |
| FTL | ferritin, light polypeptide | -0.0418289 |
| NUCKS1 | nuclear casein kinase and cyclin-dependent kinase substrate 1 | -0.0411314 |
| TPM4 | tropomyosin 4 | -0.0404641 |
| EGR1 | early growth response 1 | -0.0402261 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0394269 |
| FNDC3B | fibronectin type III domain containing 3B | -0.0389063 |
| UGCG | UDP-glucose ceramide glucosyltransferase | -0.0378313 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | -0.0376445 |
| TOP2A | topoisomerase (DNA) II alpha 170kDa | -0.0373246 |
| LIMS1 | LIM and senescent cell antigen-like domains 1 | -0.0372158 |
| MAP1B | microtubule-associated protein 1B | -0.0370762 |
| RPS8 | ribosomal protein S8 | -0.0366119 |
| ELL2 | elongation factor, RNA polymerase II, 2 | -0.0335765 |
| SMURF2 | SMAD specific E3 ubiquitin protein ligase 2 | -0.0326153 |
| ENO1 | enolase 1, (alpha) | -0.0322166 |
| TM4SF1 | transmembrane 4 L six family member 1 | -0.0321116 |
| PKM | pyruvate kinase, muscle | -0.0316358 |
| LDHA | lactate dehydrogenase A | -0.0311481 |
| RPS24 | ribosomal protein S24 | -0.0307361 |
| YBX3 | Y box binding protein 3 | -0.0304821 |
| RAB7A | RAB7A, member RAS oncogene family | -0.030472 |
| ANXA2 | annexin A2 | -0.0304533 |
| ANKRD28 | ankyrin repeat domain 28 | -0.030375 |
| POTEF | POTE ankyrin domain family, member F | -0.0300403 |
| RPS25 | ribosomal protein S25 | -0.0299471 |
| FN1 | fibronectin 1 | -0.029732 |
| TNNC1 | troponin C type 1 (slow) | -0.0296872 |
| SERPINE1 | serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 | -0.0292868 |
| ITGB1 | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | -0.0292336 |
| RPS23 | ribosomal protein S23 | -0.0291973 |
| TXNIP | thioredoxin interacting protein | -0.0291148 |
| AHNAK | AHNAK nucleoprotein | -0.0287827 |
| ABL2 | ABL proto-oncogene 2, non-receptor tyrosine kinase | -0.0287473 |
| MT2A | metallothionein 2A | -0.0280504 |
| RAD21 | RAD21 homolog (S. pombe) | -0.0279514 |
| IFI16 | interferon, gamma-inducible protein 16 | -0.0276533 |
| EIF1 | eukaryotic translation initiation factor 1 | -0.0275073 |
| ERBIN | erbb2 interacting protein | -0.0272797 |
| EMP1 | epithelial membrane protein 1 | -0.0270289 |
| RPL23 | ribosomal protein L23 | -0.0265716 |
| KPNB1 | karyopherin (importin) beta 1 | -0.0264319 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | -0.0263018 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.025828 |
| PFN1 | profilin 1 | -0.0257395 |
| MDM2 | MDM2 proto-oncogene, E3 ubiquitin protein ligase | -0.025675 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | -0.0253995 |
| RPL19 | ribosomal protein L19 | -0.0253176 |
| RPL8 | ribosomal protein L8 | -0.025096 |
| ETS1 | v-ets avian erythroblastosis virus E26 oncogene homolog 1 | -0.025016 |
| GPC6 | glypican 6 | -0.0250145 |
| JUN | jun proto-oncogene | -0.024886 |
| RPS27A | ribosomal protein S27a | -0.0247532 |
| KLF6 | Kruppel-like factor 6 | -0.024572 |
| STC1 | stanniocalcin 1 | -0.0240956 |
| RPS13 | ribosomal protein S13 | -0.0236985 |
| MAP3K20 | mitogen-activated protein kinase kinase kinase 20 | -0.0235425 |
| PGK1 | phosphoglycerate kinase 1 | -0.0233672 |
| RPL35A | ribosomal protein L35a | -0.0232506 |
| BTG1 | B-cell translocation gene 1, anti-proliferative | -0.0231879 |
| TXNRD1 | thioredoxin reductase 1 | -0.0231322 |
| NAP1L1 | nucleosome assembly protein 1-like 1 | -0.0229778 |
| CDK17 | cyclin-dependent kinase 17 | -0.0229662 |
| NEDD4L | neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase | -0.0229469 |
| ZFP36L1 | ZFP36 ring finger protein-like 1 | -0.0228083 |
| FRMD6 | FERM domain containing 6 | -0.0226607 |
| HAS2 | hyaluronan synthase 2 | -0.0225574 |
| MARCKS | myristoylated alanine-rich protein kinase C substrate | -0.0224757 |
| H1-0 | H1.0 linker histone | -0.0224159 |
| HSPD1 | heat shock 60kDa protein 1 (chaperonin) | -0.0223598 |
| RPS19 | ribosomal protein S19 | -0.0222911 |
| RPLP1 | ribosomal protein, large, P1 | -0.0222613 |
| RPL12 | ribosomal protein L12 | -0.0218752 |
| NAMPT | nicotinamide phosphoribosyltransferase | -0.0218542 |
| ARPC2 | actin related protein 2/3 complex, subunit 2, 34kDa | -0.0218261 |
| PTBP3 | polypyrimidine tract binding protein 3 | -0.0215536 |
| MKI67 | marker of proliferation Ki-67 | -0.0214659 |
| YWHAB | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta | -0.0211197 |
| ACTR3 | ARP3 actin-related protein 3 homolog (yeast) | -0.0210526 |
| CTSB | cathepsin B | -0.0209155 |
