| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine (dihydrochloride) perturbation in RKO cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine (dihydrochloride)_RKO drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| ITGB1 | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 0.15263 |
| LAMB3 | laminin, beta 3 | 0.106886 |
| RPS3 | ribosomal protein S3 | 0.100913 |
| LPP | LIM domain containing preferred translocation partner in lipoma | 0.0867883 |
| SET | SET nuclear proto-oncogene | 0.0858576 |
| EEF2 | eukaryotic translation elongation factor 2 | 0.075846 |
| UBR5 | ubiquitin protein ligase E3 component n-recognin 5 | 0.0680782 |
| PRRC2A | proline-rich coiled-coil 2A | 0.065098 |
| RPS12 | ribosomal protein S12 | 0.0628388 |
| CALD1 | caldesmon 1 | 0.0622568 |
| DNAJC5 | DnaJ (Hsp40) homolog, subfamily C, member 5 | 0.0604509 |
| EIF3H | eukaryotic translation initiation factor 3, subunit H | 0.0599211 |
| FMNL2 | formin-like 2 | 0.059691 |
| EIF4H | eukaryotic translation initiation factor 4H | 0.0594999 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0560407 |
| WDR43 | WD repeat domain 43 | 0.0549778 |
| PPP1R15A | protein phosphatase 1, regulatory subunit 15A | 0.0546478 |
| NDRG1 | N-myc downstream regulated 1 | 0.0546076 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0543478 |
| HUWE1 | HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase | 0.0530357 |
| CHD1 | chromodomain helicase DNA binding protein 1 | 0.0529018 |
| OGA | O-GlcNAcase | 0.0528938 |
| SF3B1 | splicing factor 3b, subunit 1, 155kDa | 0.0524931 |
| RPL3 | ribosomal protein L3 | 0.0524454 |
| NUP58 | nucleoporin 58 | 0.0520329 |
| ANO6 | anoctamin 6 | 0.0501982 |
| BHLHE40 | basic helix-loop-helix family, member e40 | 0.0497561 |
| TRIO | trio Rho guanine nucleotide exchange factor | 0.0497505 |
| EEF1A1 | eukaryotic translation elongation factor 1 alpha 1 | 0.0494217 |
| PTMA | prothymosin, alpha | 0.0490033 |
| WAC | WW domain containing adaptor with coiled-coil | 0.0481884 |
| STAT1 | signal transducer and activator of transcription 1, 91kDa | 0.0479498 |
| PRRC2C | proline-rich coiled-coil 2C | 0.0478376 |
| RBM26 | RNA binding motif protein 26 | 0.0454257 |
| CALR | calreticulin | 0.0453762 |
| MACF1 | microtubule-actin crosslinking factor 1 | 0.0451229 |
| HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | 0.0446515 |
| SFPQ | splicing factor proline/glutamine-rich | 0.0443809 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.0439715 |
| RPL7 | ribosomal protein L7 | 0.0434367 |
| MCL1 | myeloid cell leukemia 1 | 0.0429582 |
| ACTN1 | actinin, alpha 1 | 0.0429229 |
| TTR | transthyretin | 0.042842 |
| EIF4B | eukaryotic translation initiation factor 4B | 0.0426893 |
| ZNF292 | zinc finger protein 292 | 0.0426536 |
| RSRC2 | arginine/serine-rich coiled-coil 2 | 0.0425625 |
| CAMTA1 | calmodulin binding transcription activator 1 | 0.0421932 |
| RACK1 | receptor for activated C kinase 1 | 0.0421247 |
| FHL2 | four and a half LIM domains 2 | 0.0418144 |
| IGF2BP2 | insulin-like growth factor 2 mRNA binding protein 2 | 0.0403685 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | 0.0403164 |
| FNDC3B | fibronectin type III domain containing 3B | 0.0396358 |
| CNOT1 | CCR4-NOT transcription complex, subunit 1 | 0.0392956 |
| BIRC6 | baculoviral IAP repeat containing 6 | 0.039277 |
| ATP13A3 | ATPase type 13A3 | 0.0388778 |
| HSPA8 | heat shock 70kDa protein 8 | 0.0387492 |
| NCKAP1 | NCK-associated protein 1 | 0.0382709 |
| PSME4 | proteasome (prosome, macropain) activator subunit 4 | 0.0377589 |
| SBF2 | SET binding factor 2 | 0.0376701 |
| VCL | vinculin | 0.0371874 |
| PIAS2 | protein inhibitor of activated STAT, 2 | 0.0371013 |
| CUL3 | cullin 3 | 0.0370453 |
| PCBP2 | poly(rC) binding protein 2 | 0.0369652 |
| KDM6A | lysine (K)-specific demethylase 6A | 0.0365089 |
| CLTC | clathrin, heavy chain (Hc) | 0.0359546 |
| IQCJ-SCHIP1 | IQCJ-SCHIP1 readthrough | 0.0356756 |
| AP2B1 | adaptor-related protein complex 2, beta 1 subunit | 0.0355954 |
| ERO1A | endoplasmic reticulum oxidoreductase 1 alpha | 0.0355724 |
| RPS2 | ribosomal protein S2 | 0.0355087 |
| KIF5B | kinesin family member 5B | 0.0352176 |
| ASXL1 | additional sex combs like transcriptional regulator 1 | 0.0350972 |
| HIVEP2 | human immunodeficiency virus type I enhancer binding protein 2 | 0.0346045 |
| GAPVD1 | GTPase activating protein and VPS9 domains 1 | 0.0342692 |
| RPL37A | ribosomal protein L37a | 0.0335365 |
| NAMPT | nicotinamide phosphoribosyltransferase | 0.0335302 |
| FOXO3 | forkhead box O3 | 0.0335003 |
| CEP250 | centrosomal protein 250kDa | 0.0331325 |
| RPS17 | ribosomal protein S17 | 0.0330884 |
| SPTAN1 | spectrin, alpha, non-erythrocytic 1 | 0.0328473 |
| SAMD4A | sterile alpha motif domain containing 4A | 0.0324492 |
| KMT2E | lysine (K)-specific methyltransferase 2E | 0.0324235 |
| YTHDC1 | YTH domain containing 1 | 0.0320557 |
| CELF1 | CUGBP, Elav-like family member 1 | 0.0320414 |
| NR6A1 | nuclear receptor subfamily 6, group A, member 1 | 0.0320179 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0319277 |
| PRPF40A | PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) | 0.0317076 |
| USP9X | ubiquitin specific peptidase 9, X-linked | 0.0315844 |
| NPM1 | nucleophosmin (nucleolar phosphoprotein B23, numatrin) | 0.0314655 |
| SRSF11 | serine/arginine-rich splicing factor 11 | 0.0314131 |
| BIRC2 | baculoviral IAP repeat containing 2 | 0.0312019 |
| FHIP1A | FHF complex subunit HOOK interacting protein 1A | 0.0311993 |
| FAM91A1 | family with sequence similarity 91, member A1 | 0.0311988 |
| SMTN | smoothelin | 0.0309184 |
| CSNK2A2 | casein kinase 2, alpha prime polypeptide | 0.0309077 |
| PHC2 | polyhomeotic homolog 2 (Drosophila) | 0.0307237 |
| RBPJ | recombination signal binding protein for immunoglobulin kappa J region | 0.030703 |
| YBX1 | Y box binding protein 1 | 0.0306077 |
| PDIA6 | protein disulfide isomerase family A, member 6 | 0.0305669 |
| LRBA | LPS-responsive vesicle trafficking, beach and anchor containing | 0.0303484 |
| USP24 | ubiquitin specific peptidase 24 | 0.0303281 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.181391 |
| ACTG1 | actin gamma 1 | -0.119201 |
| SMURF2 | SMAD specific E3 ubiquitin protein ligase 2 | -0.0984787 |
| ZNF438 | zinc finger protein 438 | -0.0973389 |
| NAV3 | neuron navigator 3 | -0.0905868 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | -0.0774344 |
| RPS6 | ribosomal protein S6 | -0.0720796 |
| ABL2 | ABL proto-oncogene 2, non-receptor tyrosine kinase | -0.0601689 |
| EXT1 | exostosin glycosyltransferase 1 | -0.0570148 |
| TIMP1 | TIMP metallopeptidase inhibitor 1 | -0.0566554 |
| POTEF | POTE ankyrin domain family, member F | -0.0561765 |
| UPP1 | uridine phosphorylase 1 | -0.0551065 |
| ANTXR2 | anthrax toxin receptor 2 | -0.0530099 |
| EGR1 | early growth response 1 | -0.0509618 |
| RPL7A | ribosomal protein L7a | -0.0507535 |
| IMMP2L | IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) | -0.0504836 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0468235 |
| FUS | FUS RNA binding protein | -0.0465928 |
| RPL8 | ribosomal protein L8 | -0.0460966 |
| C2CD2 | C2 calcium-dependent domain containing 2 | -0.0457627 |
| NABP1 | nucleic acid binding protein 1 | -0.0452556 |
| RPL28 | ribosomal protein L28 | -0.0448663 |
| MAP1LC3B | microtubule-associated protein 1 light chain 3 beta | -0.0431594 |
| ASNS | asparagine synthetase (glutamine-hydrolyzing) | -0.041147 |
| FRMD4A | FERM domain containing 4A | -0.0407961 |
| ITPR2 | inositol 1,4,5-trisphosphate receptor, type 2 | -0.0405116 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.0400956 |
| TXNRD1 | thioredoxin reductase 1 | -0.0393052 |
| IFI16 | interferon, gamma-inducible protein 16 | -0.0387843 |
| IARS1 | isoleucyl-tRNA synthetase 1 | -0.0385746 |
| MSANTD3 | Myb/SANT-like DNA-binding domain containing 3 | -0.0377733 |
| SUPT3H | suppressor of Ty 3 homolog (S. cerevisiae) | -0.0370294 |
| FUBP3 | far upstream element (FUSE) binding protein 3 | -0.0364294 |
| FKBP15 | FK506 binding protein 15, 133kDa | -0.0360236 |
| SHANK1 | SH3 and multiple ankyrin repeat domains 1 | -0.0352541 |
| ERC2 | ELKS/RAB6-interacting/CAST family member 2 | -0.0348089 |
| FAF1 | Fas (TNFRSF6) associated factor 1 | -0.0338983 |
| ARHGAP22 | Rho GTPase activating protein 22 | -0.0328351 |
| RPLP2 | ribosomal protein, large, P2 | -0.0314602 |
| PFN1 | profilin 1 | -0.0314355 |
| HMGA1 | high mobility group AT-hook 1 | -0.0313704 |
| CALM1 | calmodulin 1 (phosphorylase kinase, delta) | -0.031081 |
| RPL38 | ribosomal protein L38 | -0.0307841 |
| IRF2BP2 | interferon regulatory factor 2 binding protein 2 | -0.0302326 |
| TAF15 | TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa | -0.0298517 |
| SHC1 | SHC (Src homology 2 domain containing) transforming protein 1 | -0.0298421 |
| MAPKAP1 | mitogen-activated protein kinase associated protein 1 | -0.0296176 |
| CHCHD2 | coiled-coil-helix-coiled-coil-helix domain containing 2 | -0.0295706 |
| TMSB10 | thymosin beta 10 | -0.0293229 |
| ADAMTS6 | ADAM metallopeptidase with thrombospondin type 1 motif, 6 | -0.0288526 |
| PPP1CC | protein phosphatase 1, catalytic subunit, gamma isozyme | -0.0288027 |
| RRBP1 | ribosome binding protein 1 | -0.028629 |
| MYL12A | myosin, light chain 12A, regulatory, non-sarcomeric | -0.028579 |
| UAP1 | UDP-N-acetylglucosamine pyrophosphorylase 1 | -0.0285696 |
| UBXN4 | UBX domain protein 4 | -0.0281373 |
| RBBP6 | retinoblastoma binding protein 6 | -0.0277147 |
| AK1 | adenylate kinase 1 | -0.0276511 |
| PDIA3 | protein disulfide isomerase family A, member 3 | -0.0273784 |
| VPS13B | vacuolar protein sorting 13 homolog B (yeast) | -0.0267829 |
| CAMK1D | calcium/calmodulin-dependent protein kinase ID | -0.0265003 |
| RALGAPA1 | Ral GTPase activating protein, alpha subunit 1 (catalytic) | -0.0257154 |
| ZBTB38 | zinc finger and BTB domain containing 38 | -0.0254291 |
| CSNK1E | casein kinase 1, epsilon | -0.0252822 |
| MON2 | MON2 homolog (S. cerevisiae) | -0.0252133 |
| ANKIB1 | ankyrin repeat and IBR domain containing 1 | -0.0251417 |
| RAB7A | RAB7A, member RAS oncogene family | -0.0249999 |
| ZNF638 | zinc finger protein 638 | -0.0247635 |
| DGKH | diacylglycerol kinase, eta | -0.0244668 |
| ARHGEF10 | Rho guanine nucleotide exchange factor (GEF) 10 | -0.0244167 |
| LY6E | lymphocyte antigen 6 complex, locus E | -0.024391 |
| PKM | pyruvate kinase, muscle | -0.0241318 |
| DDX18 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 | -0.0241215 |
| FTL | ferritin, light polypeptide | -0.0240094 |
| GPHN | gephyrin | -0.0238717 |
| STAU2 | staufen double-stranded RNA binding protein 2 | -0.0238435 |
| RPLP1 | ribosomal protein, large, P1 | -0.0236932 |
| RPS15 | ribosomal protein S15 | -0.0236201 |
| SPRY4 | sprouty homolog 4 (Drosophila) | -0.0233126 |
| RPLP0 | ribosomal protein, large, P0 | -0.0232856 |
| AHI1 | Abelson helper integration site 1 | -0.0231849 |
| LARS1 | leucyl-tRNA synthetase 1 | -0.022917 |
| G0S2 | G0/G1 switch 2 | -0.0229103 |
| CRK | v-crk avian sarcoma virus CT10 oncogene homolog | -0.0226397 |
| TAOK1 | TAO kinase 1 | -0.0225461 |
| AAK1 | AP2 associated kinase 1 | -0.0224715 |
| RPL39 | ribosomal protein L39 | -0.0223964 |
| ITFG1 | integrin alpha FG-GAP repeat containing 1 | -0.0220753 |
| MX2 | MX dynamin-like GTPase 2 | -0.022016 |
| VTI1A | vesicle transport through interaction with t-SNAREs 1A | -0.0219424 |
| FNDC3A | fibronectin type III domain containing 3A | -0.0218993 |
| CASP4 | caspase 4, apoptosis-related cysteine peptidase | -0.0217146 |
| EIF4G3 | eukaryotic translation initiation factor 4 gamma, 3 | -0.0215725 |
| CACNA2D1 | calcium channel, voltage-dependent, alpha 2/delta subunit 1 | -0.0214242 |
| HLA-A | major histocompatibility complex, class I, A | -0.0213994 |
| CD44 | CD44 molecule (Indian blood group) | -0.0213835 |
| ANKLE2 | ankyrin repeat and LEM domain containing 2 | -0.0212972 |
| DLC1 | DLC1 Rho GTPase activating protein | -0.0211645 |
| POLR2A | polymerase (RNA) II (DNA directed) polypeptide A, 220kDa | -0.0210373 |
| S100A11 | S100 calcium binding protein A11 | -0.0209043 |
| SIPA1L1 | signal-induced proliferation-associated 1 like 1 | -0.0208816 |
