| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine (dihydrochloride) perturbation in SNU-423 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine (dihydrochloride)_SNU-423 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| FN1 | fibronectin 1 | 0.3505 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.142135 |
| NAMPT | nicotinamide phosphoribosyltransferase | 0.117747 |
| UGCG | UDP-glucose ceramide glucosyltransferase | 0.0927559 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | 0.0886651 |
| ELL2 | elongation factor, RNA polymerase II, 2 | 0.085299 |
| SOD2 | superoxide dismutase 2, mitochondrial | 0.0845224 |
| OGA | O-GlcNAcase | 0.0718447 |
| ANXA2 | annexin A2 | 0.0717044 |
| HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | 0.0696898 |
| HLA-C | major histocompatibility complex, class I, C | 0.0696104 |
| ITGB1 | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | 0.0687659 |
| ARRDC3 | arrestin domain containing 3 | 0.0675552 |
| TENT5A | terminal nucleotidyltransferase 5A | 0.0636243 |
| CADM1 | cell adhesion molecule 1 | 0.0577473 |
| TOP2A | topoisomerase (DNA) II alpha 170kDa | 0.0566398 |
| DCBLD2 | discoidin, CUB and LCCL domain containing 2 | 0.0565386 |
| HUWE1 | HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase | 0.0562327 |
| EIF4H | eukaryotic translation initiation factor 4H | 0.0504446 |
| ZNF292 | zinc finger protein 292 | 0.0504144 |
| VCAN | versican | 0.049703 |
| OPTN | optineurin | 0.0469748 |
| MYOF | myoferlin | 0.0463219 |
| COL6A3 | collagen, type VI, alpha 3 | 0.0460465 |
| SPTBN1 | spectrin, beta, non-erythrocytic 1 | 0.0448491 |
| IGFN1 | immunoglobulin-like and fibronectin type III domain containing 1 | 0.0446044 |
| DST | dystonin | 0.0445484 |
| RTN4 | reticulon 4 | 0.0434604 |
| NAV2 | neuron navigator 2 | 0.0417958 |
| USP9X | ubiquitin specific peptidase 9, X-linked | 0.0416817 |
| BICC1 | BicC family RNA binding protein 1 | 0.04141 |
| WDFY1 | WD repeat and FYVE domain containing 1 | 0.0413846 |
| AFF4 | AF4/FMR2 family, member 4 | 0.0413223 |
| FNDC3B | fibronectin type III domain containing 3B | 0.0409932 |
| BASP1 | brain abundant, membrane attached signal protein 1 | 0.040766 |
| YWHAZ | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta | 0.0402347 |
| LOC112694756 | uncharaterized LOC112694756 | 0.0393732 |
| ANLN | anillin, actin binding protein | 0.0383939 |
| TNIP1 | TNFAIP3 interacting protein 1 | 0.0381493 |
| MKI67 | marker of proliferation Ki-67 | 0.037669 |
| THBS1 | thrombospondin 1 | 0.0376483 |
| CEP250 | centrosomal protein 250kDa | 0.0372912 |
| ATP13A3 | ATPase type 13A3 | 0.0365054 |
| FLNA | filamin A, alpha | 0.0360505 |
| SMAD3 | SMAD family member 3 | 0.0347138 |
| ADM | adrenomedullin | 0.0336391 |
| KLF7 | Kruppel-like factor 7 (ubiquitous) | 0.0332949 |
| EEF2 | eukaryotic translation elongation factor 2 | 0.0331769 |
| NPEPPS | aminopeptidase puromycin sensitive | 0.0329438 |
| AFDN | afadin, adherens junction formation factor | 0.0328932 |
| STAG2 | stromal antigen 2 | 0.0324518 |
| EDIL3 | EGF-like repeats and discoidin I-like domains 3 | 0.0320198 |
| MXI1 | MAX interactor 1, dimerization protein | 0.0319974 |
| UBA6 | ubiquitin-like modifier activating enzyme 6 | 0.0313634 |
| BRWD3 | bromodomain and WD repeat domain containing 3 | 0.0309777 |
| ARL6IP1 | ADP-ribosylation factor-like 6 interacting protein 1 | 0.0309324 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | 0.0301401 |
| PJA2 | praja ring finger 2, E3 ubiquitin protein ligase | 0.0301039 |
| LAMP2 | lysosomal-associated membrane protein 2 | 0.0296305 |
| PRRC2A | proline-rich coiled-coil 2A | 0.0288523 |
| PHLDB2 | pleckstrin homology-like domain, family B, member 2 | 0.0286187 |
| FRMD4A | FERM domain containing 4A | 0.0285139 |
| COL8A1 | collagen, type VIII, alpha 1 | 0.0276715 |
| WDR45B | WD repeat domain 45B | 0.0274017 |
| TUBB | tubulin, beta class I | 0.0271857 |
| STARD4 | StAR-related lipid transfer (START) domain containing 4 | 0.0271291 |
| PHF21A | PHD finger protein 21A | 0.0270097 |
| P4HA1 | prolyl 4-hydroxylase, alpha polypeptide I | 0.0269991 |
| CEP95 | centrosomal protein 95kDa | 0.0267573 |
| BCLAF1 | BCL2-associated transcription factor 1 | 0.0266817 |
| NUP153 | nucleoporin 153kDa | 0.0264548 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | 0.0261279 |
| RUNX2 | runt-related transcription factor 2 | 0.0254992 |
| CDK19 | cyclin-dependent kinase 19 | 0.0254441 |
| CKAP5 | cytoskeleton associated protein 5 | 0.0253786 |
| ZMIZ1 | zinc finger, MIZ-type containing 1 | 0.0248861 |
| LRRC7 | leucine rich repeat containing 7 | 0.024836 |
| AP2B1 | adaptor-related protein complex 2, beta 1 subunit | 0.0247541 |
| FHIP1A | FHF complex subunit HOOK interacting protein 1A | 0.0246432 |
| ERO1A | endoplasmic reticulum oxidoreductase 1 alpha | 0.024603 |
| CSDE1 | cold shock domain containing E1, RNA-binding | 0.024448 |
| NPM1 | nucleophosmin (nucleolar phosphoprotein B23, numatrin) | 0.0243327 |
| SPAG9 | sperm associated antigen 9 | 0.0243082 |
| TENM2 | teneurin transmembrane protein 2 | 0.0242898 |
| KDM3A | lysine (K)-specific demethylase 3A | 0.0242336 |
| COL4A2 | collagen, type IV, alpha 2 | 0.0240558 |
| IL6ST | interleukin 6 signal transducer | 0.0236515 |
| ZMYND8 | zinc finger, MYND-type containing 8 | 0.0234405 |
| SNX9 | sorting nexin 9 | 0.0233791 |
| SF3B1 | splicing factor 3b, subunit 1, 155kDa | 0.0232938 |
| AHR | aryl hydrocarbon receptor | 0.0232807 |
| AHNAK | AHNAK nucleoprotein | 0.0232556 |
| PAG1 | phosphoprotein membrane anchor with glycosphingolipid microdomains 1 | 0.0232096 |
| BNIP3 | BCL2/adenovirus E1B 19kDa interacting protein 3 | 0.0230563 |
| HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | 0.0230106 |
| ARFGEF2 | ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) | 0.0229485 |
| SFTPA2 | surfactant protein A2 | 0.0227264 |
| PIK3C2A | phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha | 0.0227086 |
| YEATS2 | YEATS domain containing 2 | 0.0226493 |
| DIAPH3 | diaphanous-related formin 3 | 0.0225424 |
| Symbol | Name | Standardized Value |
|---|---|---|
| MT2A | metallothionein 2A | -0.195661 |
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.173447 |
| HLA-B | major histocompatibility complex, class I, B | -0.149611 |
| TMSB10 | thymosin beta 10 | -0.128173 |
| FTL | ferritin, light polypeptide | -0.110523 |
| IQCJ-SCHIP1 | IQCJ-SCHIP1 readthrough | -0.102282 |
| RPS6 | ribosomal protein S6 | -0.082328 |
| ZSWIM6 | zinc finger, SWIM-type containing 6 | -0.0787273 |
| AGAP1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | -0.0768443 |
| HMGA2 | high mobility group AT-hook 2 | -0.0761287 |
| INTS6 | integrator complex subunit 6 | -0.070387 |
| HDAC9 | histone deacetylase 9 | -0.0677247 |
| IMMP2L | IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) | -0.0669131 |
| MAGI2 | membrane associated guanylate kinase, WW and PDZ domain containing 2 | -0.0660675 |
| KCNMA1 | potassium channel, calcium activated large conductance subfamily M alpha, member 1 | -0.0658936 |
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.065843 |
| FTH1 | ferritin, heavy polypeptide 1 | -0.0586399 |
| B2M | beta-2-microglobulin | -0.057403 |
| CDH13 | cadherin 13 | -0.0563364 |
| RPLP1 | ribosomal protein, large, P1 | -0.0547059 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | -0.0541325 |
| ASPH | aspartate beta-hydroxylase | -0.0540316 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | -0.0524007 |
| RPS19 | ribosomal protein S19 | -0.0484774 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.047004 |
| RPL37A | ribosomal protein L37a | -0.0465643 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | -0.0465559 |
| TPT1 | tumor protein, translationally-controlled 1 | -0.046531 |
| RPL35A | ribosomal protein L35a | -0.0465044 |
| RPS23 | ribosomal protein S23 | -0.0464904 |
| VIM | vimentin | -0.0456273 |
| RPL23 | ribosomal protein L23 | -0.0455476 |
| IFIT2 | interferon-induced protein with tetratricopeptide repeats 2 | -0.0453525 |
| VEGFA | vascular endothelial growth factor A | -0.0452607 |
| RAB7A | RAB7A, member RAS oncogene family | -0.0452375 |
| RPLP2 | ribosomal protein, large, P2 | -0.0441938 |
| KYNU | kynureninase | -0.0413882 |
| IER3 | immediate early response 3 | -0.0399856 |
| MT1X | metallothionein 1X | -0.0397665 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.0393453 |
| NAV1 | neuron navigator 1 | -0.0390299 |
| LDHA | lactate dehydrogenase A | -0.0376908 |
| RIGI | RNA sensor RIG-I | -0.0374823 |
| RPS8 | ribosomal protein S8 | -0.0372122 |
| RPL5 | ribosomal protein L5 | -0.0370982 |
| RPL9 | ribosomal protein L9 | -0.0369064 |
| ZBTB20 | zinc finger and BTB domain containing 20 | -0.0364172 |
| PAPPA | pregnancy-associated plasma protein A, pappalysin 1 | -0.0362717 |
| CD44 | CD44 molecule (Indian blood group) | -0.036149 |
| PITPNC1 | phosphatidylinositol transfer protein, cytoplasmic 1 | -0.035922 |
| RND3 | Rho family GTPase 3 | -0.0352605 |
| EFNA5 | ephrin-A5 | -0.0351511 |
| BPTF | bromodomain PHD finger transcription factor | -0.0342295 |
| ATRX | alpha thalassemia/mental retardation syndrome X-linked | -0.0341677 |
| TIMP2 | TIMP metallopeptidase inhibitor 2 | -0.0338703 |
| ZCCHC7 | zinc finger, CCHC domain containing 7 | -0.0335127 |
| RPL7A | ribosomal protein L7a | -0.0321832 |
| GNB1 | guanine nucleotide binding protein (G protein), beta polypeptide 1 | -0.0320946 |
| RPL31 | ribosomal protein L31 | -0.0317546 |
| RPL28 | ribosomal protein L28 | -0.0311954 |
| IFITM3 | interferon induced transmembrane protein 3 | -0.0307582 |
| IL1RAPL1 | interleukin 1 receptor accessory protein-like 1 | -0.0306213 |
| RPS24 | ribosomal protein S24 | -0.030555 |
| RPS13 | ribosomal protein S13 | -0.0303681 |
| RPL36 | ribosomal protein L36 | -0.0302555 |
| ISG15 | ISG15 ubiquitin-like modifier | -0.0299073 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | -0.0291981 |
| RPS21 | ribosomal protein S21 | -0.0291381 |
| S100A9 | S100 calcium binding protein A9 | -0.0286076 |
| RPL19 | ribosomal protein L19 | -0.0284074 |
| PTMA | prothymosin, alpha | -0.0280376 |
| IFI6 | interferon, alpha-inducible protein 6 | -0.028033 |
| MARCKS | myristoylated alanine-rich protein kinase C substrate | -0.0279451 |
| GRIN2A | glutamate receptor, ionotropic, N-methyl D-aspartate 2A | -0.0278469 |
| AFF3 | AF4/FMR2 family, member 3 | -0.0275402 |
| TBCA | tubulin folding cofactor A | -0.0274713 |
| RPL38 | ribosomal protein L38 | -0.0273465 |
| RPL26 | ribosomal protein L26 | -0.0271774 |
| IARS1 | isoleucyl-tRNA synthetase 1 | -0.0270223 |
| P4HB | prolyl 4-hydroxylase, beta polypeptide | -0.0269677 |
| C3 | complement component 3 | -0.0269619 |
| NAP1L1 | nucleosome assembly protein 1-like 1 | -0.0269584 |
| PTK2 | protein tyrosine kinase 2 | -0.0269078 |
| HLA-A | major histocompatibility complex, class I, A | -0.0268624 |
| RPS10 | ribosomal protein S10 | -0.0267295 |
| RPS14 | ribosomal protein S14 | -0.0267205 |
| IFIH1 | interferon induced with helicase C domain 1 | -0.0266871 |
| RPS29 | ribosomal protein S29 | -0.0263985 |
| RPL36A | ribosomal protein L36a | -0.0263922 |
| WWOX | WW domain containing oxidoreductase | -0.0262123 |
| SVIL | supervillin | -0.0260773 |
| SP100 | SP100 nuclear antigen | -0.0260764 |
| MAP1B | microtubule-associated protein 1B | -0.0260507 |
| SIPA1L1 | signal-induced proliferation-associated 1 like 1 | -0.0258133 |
| SEPTIN9 | septin 9 | -0.0255714 |
| GOLGB1 | golgin B1 | -0.0254126 |
| TANC2 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 | -0.0253592 |
| RAD51B | RAD51 paralog B | -0.0247603 |
| SPARC | secreted protein, acidic, cysteine-rich (osteonectin) | -0.0247296 |
| RBMS3 | RNA binding motif, single stranded interacting protein 3 | -0.0247169 |
