| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine (dihydrochloride) perturbation in SW 1088 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine (dihydrochloride)_SW 1088 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| COL6A3 | collagen, type VI, alpha 3 | 0.224828 |
| VIM | vimentin | 0.194672 |
| IGFBP3 | insulin-like growth factor binding protein 3 | 0.185614 |
| CXCL8 | chemokine (C-X-C motif) ligand 8 | 0.126128 |
| ZC3HAV1 | zinc finger CCCH-type, antiviral 1 | 0.0800306 |
| B2M | beta-2-microglobulin | 0.0782332 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | 0.0771198 |
| TRIO | trio Rho guanine nucleotide exchange factor | 0.0762897 |
| SPARC | secreted protein, acidic, cysteine-rich (osteonectin) | 0.0752734 |
| PLOD2 | procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 | 0.0727867 |
| F3 | coagulation factor III (thromboplastin, tissue factor) | 0.0695423 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | 0.0686774 |
| COL1A1 | collagen, type I, alpha 1 | 0.0665771 |
| MAP4K4 | mitogen-activated protein kinase kinase kinase kinase 4 | 0.0648708 |
| ERRFI1 | ERBB receptor feedback inhibitor 1 | 0.063288 |
| ANXA5 | annexin A5 | 0.0578648 |
| PKM | pyruvate kinase, muscle | 0.0564357 |
| ASPH | aspartate beta-hydroxylase | 0.0544279 |
| RASAL2 | RAS protein activator like 2 | 0.0527084 |
| FN1 | fibronectin 1 | 0.051304 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | 0.0506844 |
| PCBP2 | poly(rC) binding protein 2 | 0.0495982 |
| COL1A2 | collagen, type I, alpha 2 | 0.0495437 |
| FAM13A | family with sequence similarity 13, member A | 0.0491882 |
| AGAP1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | 0.0490384 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | 0.0489724 |
| CALU | calumenin | 0.0487161 |
| KLF7 | Kruppel-like factor 7 (ubiquitous) | 0.048279 |
| ARRDC3 | arrestin domain containing 3 | 0.0471832 |
| ERBIN | erbb2 interacting protein | 0.0471287 |
| RTN4 | reticulon 4 | 0.0458354 |
| JMJD1C | jumonji domain containing 1C | 0.0440429 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | 0.0431951 |
| DLG1 | discs, large homolog 1 (Drosophila) | 0.0425327 |
| IGF2BP3 | insulin-like growth factor 2 mRNA binding protein 3 | 0.0417249 |
| MAP1B | microtubule-associated protein 1B | 0.0412783 |
| NCOR1 | nuclear receptor corepressor 1 | 0.0412731 |
| YWHAE | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon | 0.040737 |
| MAP4 | microtubule-associated protein 4 | 0.040713 |
| ATP13A3 | ATPase type 13A3 | 0.0401525 |
| DDIT4 | DNA-damage-inducible transcript 4 | 0.0396309 |
| SEPTIN7 | septin 7 | 0.0390231 |
| RAP1B | RAP1B, member of RAS oncogene family | 0.0386455 |
| HSPD1 | heat shock 60kDa protein 1 (chaperonin) | 0.0379991 |
| POTEF | POTE ankyrin domain family, member F | 0.0379658 |
| UGCG | UDP-glucose ceramide glucosyltransferase | 0.0375483 |
| KTN1 | kinectin 1 (kinesin receptor) | 0.0372276 |
| ENO1 | enolase 1, (alpha) | 0.0371416 |
| SEPTIN9 | septin 9 | 0.0370256 |
| TFPI | tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) | 0.0368375 |
| EGFR | epidermal growth factor receptor | 0.0367475 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0361296 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | 0.0360761 |
| HYCC1 | hyccin PI4KA lipid kinase complex subunit 1 | 0.0360447 |
| FNDC3B | fibronectin type III domain containing 3B | 0.0360224 |
| PDIA3 | protein disulfide isomerase family A, member 3 | 0.0357682 |
| ASAP1 | ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 | 0.035711 |
| TAX1BP1 | Tax1 (human T-cell leukemia virus type I) binding protein 1 | 0.0352436 |
| KIF13A | kinesin family member 13A | 0.0342292 |
| HUWE1 | HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase | 0.0341725 |
| TENT2 | terminal nucleotidyltransferase 2 | 0.0341034 |
| COPA | coatomer protein complex, subunit alpha | 0.0337778 |
| DST | dystonin | 0.0331842 |
| RSRC2 | arginine/serine-rich coiled-coil 2 | 0.0331495 |
| FOSL1 | FOS-like antigen 1 | 0.0329148 |
| MKLN1 | muskelin 1, intracellular mediator containing kelch motifs | 0.0324466 |
| MYOF | myoferlin | 0.0321068 |
| RAB8B | RAB8B, member RAS oncogene family | 0.031997 |
| HELZ | helicase with zinc finger | 0.0318611 |
| NAMPT | nicotinamide phosphoribosyltransferase | 0.0317781 |
| PDIA6 | protein disulfide isomerase family A, member 6 | 0.0316207 |
| RIOK3 | RIO kinase 3 | 0.0314734 |
| WDR41 | WD repeat domain 41 | 0.0313897 |
| RPS12 | ribosomal protein S12 | 0.0313464 |
| MAP4K5 | mitogen-activated protein kinase kinase kinase kinase 5 | 0.031002 |
| CLASP1 | cytoplasmic linker associated protein 1 | 0.0308882 |
| ADM | adrenomedullin | 0.0308495 |
| RAB1A | RAB1A, member RAS oncogene family | 0.0306156 |
| ARPC2 | actin related protein 2/3 complex, subunit 2, 34kDa | 0.0302403 |
| CLIC4 | chloride intracellular channel 4 | 0.0302173 |
| RND3 | Rho family GTPase 3 | 0.0301015 |
| CDK6 | cyclin-dependent kinase 6 | 0.0299921 |
| FLNA | filamin A, alpha | 0.0299444 |
| CTNNA1 | catenin (cadherin-associated protein), alpha 1, 102kDa | 0.0299413 |
| EMP1 | epithelial membrane protein 1 | 0.0294922 |
| PPP1R15A | protein phosphatase 1, regulatory subunit 15A | 0.029436 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0293348 |
| PTMA | prothymosin, alpha | 0.0292002 |
| OPTN | optineurin | 0.0291096 |
| MARCKS | myristoylated alanine-rich protein kinase C substrate | 0.0289879 |
| VPS54 | vacuolar protein sorting 54 homolog (S. cerevisiae) | 0.0289059 |
| CALD1 | caldesmon 1 | 0.0289056 |
| MMAB | methylmalonic aciduria (cobalamin deficiency) cblB type | 0.0287779 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | 0.0287211 |
| CYP51A1 | cytochrome P450, family 51, subfamily A, polypeptide 1 | 0.0286132 |
| GNAI3 | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 | 0.0285307 |
| PACS1 | phosphofurin acidic cluster sorting protein 1 | 0.0285043 |
| RBFOX2 | RNA binding protein, fox-1 homolog (C. elegans) 2 | 0.0284461 |
| ATP2B1 | ATPase, Ca++ transporting, plasma membrane 1 | 0.0283629 |
| ZC3H11A | zinc finger CCCH-type containing 11A | 0.0283332 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.198667 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | -0.127104 |
| MT2A | metallothionein 2A | -0.114307 |
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.103184 |
| TMSB10 | thymosin beta 10 | -0.0717245 |
| SMYD3 | SET and MYND domain containing 3 | -0.0714118 |
| TGFBI | transforming growth factor, beta-induced, 68kDa | -0.065794 |
| SDC4 | syndecan 4 | -0.0643042 |
| ZMYND8 | zinc finger, MYND-type containing 8 | -0.0541698 |
| PRELID2 | PRELI domain containing 2 | -0.0541343 |
| ITPR1 | inositol 1,4,5-trisphosphate receptor, type 1 | -0.0534109 |
| ANKIB1 | ankyrin repeat and IBR domain containing 1 | -0.0526425 |
| CANX | calnexin | -0.0521432 |
| HMGA2 | high mobility group AT-hook 2 | -0.050704 |
| COG6 | component of oligomeric golgi complex 6 | -0.0506874 |
| RAD51B | RAD51 paralog B | -0.0502043 |
| ERC2 | ELKS/RAB6-interacting/CAST family member 2 | -0.0495266 |
| MT1X | metallothionein 1X | -0.0460762 |
| CALR | calreticulin | -0.0443356 |
| BTBD9 | BTB (POZ) domain containing 9 | -0.0441398 |
| HLA-B | major histocompatibility complex, class I, B | -0.043802 |
| WDPCP | WD repeat containing planar cell polarity effector | -0.0427312 |
| STC1 | stanniocalcin 1 | -0.0424884 |
| AHNAK | AHNAK nucleoprotein | -0.0410921 |
| ARL6IP1 | ADP-ribosylation factor-like 6 interacting protein 1 | -0.0397741 |
| SOD2 | superoxide dismutase 2, mitochondrial | -0.0397415 |
| P4HA2 | prolyl 4-hydroxylase, alpha polypeptide II | -0.0380949 |
| FNIP1 | folliculin interacting protein 1 | -0.0380718 |
| UMAD1 | UBAP1-MVB12-associated (UMA) domain containing 1 | -0.0380101 |
| ALK | anaplastic lymphoma receptor tyrosine kinase | -0.0374998 |
| TPT1 | tumor protein, translationally-controlled 1 | -0.0368177 |
| PTGES2 | prostaglandin E synthase 2 | -0.0357595 |
| LOX | lysyl oxidase | -0.0354941 |
| CA12 | carbonic anhydrase XII | -0.0353562 |
| ELL2 | elongation factor, RNA polymerase II, 2 | -0.0351748 |
| TMEM263 | transmembrane protein 263 | -0.0351199 |
| COL6A1 | collagen, type VI, alpha 1 | -0.034878 |
| AP3B1 | adaptor-related protein complex 3, beta 1 subunit | -0.0339528 |
| SLC4A7 | solute carrier family 4, sodium bicarbonate cotransporter, member 7 | -0.033576 |
| RPL34 | ribosomal protein L34 | -0.033245 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | -0.0332289 |
| PDCD6IP | programmed cell death 6 interacting protein | -0.0326971 |
| ZBTB20 | zinc finger and BTB domain containing 20 | -0.0316738 |
| BBS9 | Bardet-Biedl syndrome 9 | -0.0314893 |
| PAFAH1B1 | platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) | -0.0310298 |
| JPH2 | junctophilin 2 | -0.0305676 |
| RALY | RALY heterogeneous nuclear ribonucleoprotein | -0.0305289 |
| BDP1 | B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB | -0.0303941 |
| MORF4L2 | mortality factor 4 like 2 | -0.0302327 |
| ANKRD17 | ankyrin repeat domain 17 | -0.0300229 |
| GFPT2 | glutamine-fructose-6-phosphate transaminase 2 | -0.0294265 |
| ITFG1 | integrin alpha FG-GAP repeat containing 1 | -0.0294196 |
| ZC3H13 | zinc finger CCCH-type containing 13 | -0.0293786 |
| GOLGB1 | golgin B1 | -0.0289552 |
| NFX1 | nuclear transcription factor, X-box binding 1 | -0.0286192 |
| ANKHD1 | ankyrin repeat and KH domain containing 1 | -0.0284462 |
| GPR107 | G protein-coupled receptor 107 | -0.0279074 |
| SPDYA | speedy/RINGO cell cycle regulator family member A | -0.0278045 |
| CEMIP | cell migration inducing protein, hyaluronan binding | -0.0277119 |
| PDLIM5 | PDZ and LIM domain 5 | -0.0275939 |
| AGO3 | argonaute RISC catalytic component 3 | -0.0273724 |
| PRRC1 | proline-rich coiled-coil 1 | -0.0273316 |
| HIVEP3 | human immunodeficiency virus type I enhancer binding protein 3 | -0.0269716 |
| COG5 | component of oligomeric golgi complex 5 | -0.0269446 |
| MYSM1 | Myb-like, SWIRM and MPN domains 1 | -0.0269039 |
| EXOC4 | exocyst complex component 4 | -0.0267771 |
| COL6A2 | collagen, type VI, alpha 2 | -0.0266858 |
| PDIA4 | protein disulfide isomerase family A, member 4 | -0.0263964 |
| HIPK2 | homeodomain interacting protein kinase 2 | -0.026387 |
| FAM13B | family with sequence similarity 13, member B | -0.0262996 |
| NSD3 | nuclear receptor binding SET domain protein 3 | -0.0259976 |
| TIMP3 | TIMP metallopeptidase inhibitor 3 | -0.0259317 |
| SUB1 | SUB1 homolog (S. cerevisiae) | -0.025656 |
| HDLBP | high density lipoprotein binding protein | -0.0254709 |
| NDFIP1 | Nedd4 family interacting protein 1 | -0.0253899 |
| STAG2 | stromal antigen 2 | -0.0253433 |
| FTL | ferritin, light polypeptide | -0.0249218 |
| TTC3 | tetratricopeptide repeat domain 3 | -0.0248137 |
| VEZT | vezatin, adherens junctions transmembrane protein | -0.0244586 |
| HPCAL1 | hippocalcin-like 1 | -0.024119 |
| P4HA1 | prolyl 4-hydroxylase, alpha polypeptide I | -0.0241066 |
| TMED9 | transmembrane emp24 protein transport domain containing 9 | -0.0240418 |
| PMM2 | phosphomannomutase 2 | -0.0240043 |
| CSMD2 | CUB and Sushi multiple domains 2 | -0.0238673 |
| XPO1 | exportin 1 | -0.0238143 |
| RPL35A | ribosomal protein L35a | -0.0237506 |
| SCLT1 | sodium channel and clathrin linker 1 | -0.0237455 |
| EIF2A | eukaryotic translation initiation factor 2A, 65kDa | -0.0237318 |
| TOMM7 | translocase of outer mitochondrial membrane 7 homolog (yeast) | -0.0237081 |
| ELP4 | elongator acetyltransferase complex subunit 4 | -0.0236626 |
| BRAF | B-Raf proto-oncogene, serine/threonine kinase | -0.0232574 |
| PLEKHA8 | pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 | -0.0232061 |
| PFKFB4 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 | -0.0230513 |
| MICAL3 | microtubule associated monooxygenase, calponin and LIM domain containing 3 | -0.0229592 |
| HECTD4 | HECT domain containing E3 ubiquitin protein ligase 4 | -0.0229229 |
| STK17A | serine/threonine kinase 17a | -0.0228308 |
| PPFIBP1 | PTPRF interacting protein, binding protein 1 (liprin beta 1) | -0.0227771 |
| APOLD1 | apolipoprotein L domain containing 1 | -0.0227531 |
| MAPK8 | mitogen-activated protein kinase 8 | -0.0227478 |
| SETD5 | SET domain containing 5 | -0.0226411 |
