| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine (dihydrochloride) perturbation in SW 900 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine (dihydrochloride)_SW 900 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| CXCL8 | chemokine (C-X-C motif) ligand 8 | 0.079441 |
| RBPJ | recombination signal binding protein for immunoglobulin kappa J region | 0.0402504 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | 0.0341258 |
| CD109 | CD109 molecule | 0.0340597 |
| FLNA | filamin A, alpha | 0.0318505 |
| PDIA3 | protein disulfide isomerase family A, member 3 | 0.0290557 |
| UBR5 | ubiquitin protein ligase E3 component n-recognin 5 | 0.027606 |
| ERO1A | endoplasmic reticulum oxidoreductase 1 alpha | 0.0275886 |
| HUWE1 | HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase | 0.0269805 |
| SEC23A | Sec23 homolog A (S. cerevisiae) | 0.0261805 |
| HMGB3 | high mobility group box 3 | 0.024901 |
| HILPDA | hypoxia inducible lipid droplet-associated | 0.0245339 |
| WDFY1 | WD repeat and FYVE domain containing 1 | 0.0236463 |
| LOC112694756 | uncharaterized LOC112694756 | 0.0235209 |
| EIF4H | eukaryotic translation initiation factor 4H | 0.0231187 |
| SPTBN1 | spectrin, beta, non-erythrocytic 1 | 0.0225179 |
| BIRC6 | baculoviral IAP repeat containing 6 | 0.0220938 |
| SF3B1 | splicing factor 3b, subunit 1, 155kDa | 0.0216894 |
| RNF145 | ring finger protein 145 | 0.0214928 |
| SOD2 | superoxide dismutase 2, mitochondrial | 0.020682 |
| PLEC | plectin | 0.0204838 |
| MIS18BP1 | MIS18 binding protein 1 | 0.0200383 |
| UBA6 | ubiquitin-like modifier activating enzyme 6 | 0.0199114 |
| AFDN | afadin, adherens junction formation factor | 0.0194245 |
| SRP54 | signal recognition particle 54kDa | 0.019281 |
| XPO1 | exportin 1 | 0.0192269 |
| WDR26 | WD repeat domain 26 | 0.0191864 |
| SMOX | spermine oxidase | 0.0190489 |
| AHR | aryl hydrocarbon receptor | 0.0188945 |
| WDR45B | WD repeat domain 45B | 0.0186616 |
| HYCC1 | hyccin PI4KA lipid kinase complex subunit 1 | 0.018659 |
| HELZ | helicase with zinc finger | 0.0185039 |
| AP2B1 | adaptor-related protein complex 2, beta 1 subunit | 0.0182509 |
| SEC31A | SEC31 homolog A (S. cerevisiae) | 0.0181588 |
| KMT2E | lysine (K)-specific methyltransferase 2E | 0.0180917 |
| RPL3 | ribosomal protein L3 | 0.0179557 |
| MARK3 | MAP/microtubule affinity-regulating kinase 3 | 0.0178877 |
| EPS8 | epidermal growth factor receptor pathway substrate 8 | 0.01781 |
| NUP58 | nucleoporin 58 | 0.0175864 |
| DNAJC3 | DnaJ (Hsp40) homolog, subfamily C, member 3 | 0.0173857 |
| HNRNPU | heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) | 0.0173749 |
| PPP1R15B | protein phosphatase 1, regulatory subunit 15B | 0.0172324 |
| SIRT1 | sirtuin 1 | 0.0172007 |
| YTHDF3 | YTH N(6)-methyladenosine RNA binding protein 3 | 0.0170733 |
| CLTC | clathrin, heavy chain (Hc) | 0.0170345 |
| RAB1A | RAB1A, member RAS oncogene family | 0.0167437 |
| FXR1 | fragile X mental retardation, autosomal homolog 1 | 0.0166876 |
| HLA-C | major histocompatibility complex, class I, C | 0.0164989 |
| GFPT1 | glutamine--fructose-6-phosphate transaminase 1 | 0.0163589 |
| DDIT4 | DNA-damage-inducible transcript 4 | 0.0163445 |
| SEC24C | SEC24 family member C | 0.0162133 |
| RPRD2 | regulation of nuclear pre-mRNA domain containing 2 | 0.016112 |
| TBC1D22A | TBC1 domain family, member 22A | 0.0160846 |
| NEK7 | NIMA-related kinase 7 | 0.0160675 |
| IRAK3 | interleukin-1 receptor-associated kinase 3 | 0.0159365 |
| FHIP1A | FHF complex subunit HOOK interacting protein 1A | 0.0157847 |
| RPS2 | ribosomal protein S2 | 0.0156865 |
| ZNRF1 | zinc and ring finger 1, E3 ubiquitin protein ligase | 0.0155954 |
| CDC73 | cell division cycle 73 | 0.0155895 |
| EIF2AK3 | eukaryotic translation initiation factor 2-alpha kinase 3 | 0.015585 |
| ARRDC3 | arrestin domain containing 3 | 0.0155128 |
| MLEC | malectin | 0.0153684 |
| MARCHF7 | membrane associated ring-CH-type finger 7 | 0.0153116 |
| HIVEP2 | human immunodeficiency virus type I enhancer binding protein 2 | 0.0152987 |
| RAB6A | RAB6A, member RAS oncogene family | 0.0152181 |
| BNIP3L | BCL2/adenovirus E1B 19kDa interacting protein 3-like | 0.0151536 |
| TFG | TRK-fused gene | 0.015018 |
| KDM3B | lysine (K)-specific demethylase 3B | 0.0149104 |
| CALR | calreticulin | 0.0148447 |
| PPP2R2A | protein phosphatase 2, regulatory subunit B, alpha | 0.0147816 |
| GDNF | glial cell derived neurotrophic factor | 0.0146842 |
| NDEL1 | nudE neurodevelopment protein 1-like 1 | 0.014566 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | 0.0144875 |
| ARL6IP1 | ADP-ribosylation factor-like 6 interacting protein 1 | 0.0144824 |
| TNFAIP2 | tumor necrosis factor, alpha-induced protein 2 | 0.0144202 |
| TRA2A | transformer 2 alpha homolog (Drosophila) | 0.0143742 |
| DHX15 | DEAH (Asp-Glu-Ala-His) box helicase 15 | 0.0143701 |
| ADD3 | adducin 3 (gamma) | 0.014361 |
| SLAIN2 | SLAIN motif family, member 2 | 0.0142011 |
| RNMT | RNA (guanine-7-) methyltransferase | 0.0141517 |
| FAT1 | FAT atypical cadherin 1 | 0.0138951 |
| CRIM1 | cysteine rich transmembrane BMP regulator 1 (chordin-like) | 0.0138923 |
| ATXN2L | ataxin 2-like | 0.0137446 |
| TRPC4AP | transient receptor potential cation channel, subfamily C, member 4 associated protein | 0.0136845 |
| GATAD2B | GATA zinc finger domain containing 2B | 0.013627 |
| GOLT1B | golgi transport 1B | 0.0134505 |
| TENT2 | terminal nucleotidyltransferase 2 | 0.0133426 |
| RSRP1 | arginine/serine-rich protein 1 | 0.0132339 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.01321 |
| SURF4 | surfeit 4 | 0.0131601 |
| PRRC1 | proline-rich coiled-coil 1 | 0.0131411 |
| MAP4K3 | mitogen-activated protein kinase kinase kinase kinase 3 | 0.0129278 |
| ACADVL | acyl-CoA dehydrogenase, very long chain | 0.0128278 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | 0.012778 |
| AHCTF1 | AT hook containing transcription factor 1 | 0.0127545 |
| SHB | Src homology 2 domain containing adaptor protein B | 0.0127456 |
| KLHL28 | kelch-like family member 28 | 0.0125828 |
| CALU | calumenin | 0.012582 |
| ATL2 | atlastin GTPase 2 | 0.0125779 |
| CTBP2 | C-terminal binding protein 2 | 0.0125665 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.387688 |
| CYP1B1 | cytochrome P450, family 1, subfamily B, polypeptide 1 | -0.212868 |
| MT2A | metallothionein 2A | -0.203876 |
| FN1 | fibronectin 1 | -0.142414 |
| ASPH | aspartate beta-hydroxylase | -0.131538 |
| TMSB10 | thymosin beta 10 | -0.131381 |
| NRG1 | neuregulin 1 | -0.124304 |
| FTL | ferritin, light polypeptide | -0.10188 |
| B2M | beta-2-microglobulin | -0.0912199 |
| HLA-B | major histocompatibility complex, class I, B | -0.0851512 |
| IFI27 | interferon, alpha-inducible protein 27 | -0.0808741 |
| HMGA2 | high mobility group AT-hook 2 | -0.0690094 |
| ZC3HAV1 | zinc finger CCCH-type, antiviral 1 | -0.0598112 |
| TMEM156 | transmembrane protein 156 | -0.0582795 |
| CCNL1 | cyclin L1 | -0.0572609 |
| MAP1B | microtubule-associated protein 1B | -0.0549189 |
| TMSB4X | thymosin beta 4, X-linked | -0.0532451 |
| S100A6 | S100 calcium binding protein A6 | -0.0523805 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0513474 |
| SYT1 | synaptotagmin I | -0.0499894 |
| SOX4 | SRY (sex determining region Y)-box 4 | -0.0498741 |
| LOC102724023 | ES1 protein homolog, mitochondrial | -0.0479781 |
| ITGA1 | integrin, alpha 1 | -0.0478186 |
| IFI6 | interferon, alpha-inducible protein 6 | -0.0468746 |
| EXT1 | exostosin glycosyltransferase 1 | -0.046483 |
| POTEF | POTE ankyrin domain family, member F | -0.0464416 |
| PTMA | prothymosin, alpha | -0.0461851 |
| VEGFA | vascular endothelial growth factor A | -0.0440377 |
| CALM2 | calmodulin 2 (phosphorylase kinase, delta) | -0.0438666 |
| SFTPA2 | surfactant protein A2 | -0.0438422 |
| PARP14 | poly (ADP-ribose) polymerase family, member 14 | -0.0436936 |
| KLHL5 | kelch-like family member 5 | -0.0428945 |
| IFI16 | interferon, gamma-inducible protein 16 | -0.0417878 |
| PLCB1 | phospholipase C, beta 1 (phosphoinositide-specific) | -0.0409967 |
| DUSP6 | dual specificity phosphatase 6 | -0.0407082 |
| SQSTM1 | sequestosome 1 | -0.0399288 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | -0.0383861 |
| IMMP2L | IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) | -0.0378223 |
| ACTG1 | actin gamma 1 | -0.0372479 |
| NUCKS1 | nuclear casein kinase and cyclin-dependent kinase substrate 1 | -0.0372411 |
| VCL | vinculin | -0.0371461 |
| S100A10 | S100 calcium binding protein A10 | -0.0366559 |
| EGR1 | early growth response 1 | -0.0366383 |
| EIF2AK2 | eukaryotic translation initiation factor 2-alpha kinase 2 | -0.0363608 |
| VIM | vimentin | -0.036141 |
| RPS21 | ribosomal protein S21 | -0.0361158 |
| RPLP1 | ribosomal protein, large, P1 | -0.036056 |
| S100A9 | S100 calcium binding protein A9 | -0.035337 |
| ITGA2 | integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) | -0.0352456 |
| KCNQ5 | potassium channel, voltage gated KQT-like subfamily Q, member 5 | -0.0347917 |
| ETV1 | ets variant 1 | -0.0341839 |
| FTH1 | ferritin, heavy polypeptide 1 | -0.0339955 |
| AHI1 | Abelson helper integration site 1 | -0.0339853 |
| TPT1 | tumor protein, translationally-controlled 1 | -0.0338286 |
| RPS19 | ribosomal protein S19 | -0.0335724 |
| EIF4A1 | eukaryotic translation initiation factor 4A1 | -0.0325644 |
| DCBLD2 | discoidin, CUB and LCCL domain containing 2 | -0.0325522 |
| IRF2BP2 | interferon regulatory factor 2 binding protein 2 | -0.0324082 |
| PGK1 | phosphoglycerate kinase 1 | -0.0323406 |
| YBX3 | Y box binding protein 3 | -0.0323055 |
| IFIH1 | interferon induced with helicase C domain 1 | -0.0319843 |
| SMAD3 | SMAD family member 3 | -0.0309501 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.0308161 |
| LTBP1 | latent transforming growth factor beta binding protein 1 | -0.0307274 |
| HMGA1 | high mobility group AT-hook 1 | -0.0307191 |
| RPS8 | ribosomal protein S8 | -0.0306909 |
| NTN4 | netrin 4 | -0.0304457 |
| ARHGAP5 | Rho GTPase activating protein 5 | -0.0304343 |
| STAT1 | signal transducer and activator of transcription 1, 91kDa | -0.0299103 |
| PTK2 | protein tyrosine kinase 2 | -0.0299037 |
| RPL38 | ribosomal protein L38 | -0.0298048 |
| ENO1 | enolase 1, (alpha) | -0.0294947 |
| ZBTB20 | zinc finger and BTB domain containing 20 | -0.0294334 |
| RPS27A | ribosomal protein S27a | -0.0292502 |
| RSF1 | remodeling and spacing factor 1 | -0.0288281 |
| LY6E | lymphocyte antigen 6 complex, locus E | -0.0282792 |
| CD55 | CD55 molecule, decay accelerating factor for complement (Cromer blood group) | -0.0281761 |
| RPL35A | ribosomal protein L35a | -0.0281509 |
| IFI44L | interferon-induced protein 44-like | -0.0278526 |
| RANBP17 | RAN binding protein 17 | -0.0278152 |
| TIMP1 | TIMP metallopeptidase inhibitor 1 | -0.0277591 |
| ANKRD28 | ankyrin repeat domain 28 | -0.0276897 |
| TXNIP | thioredoxin interacting protein | -0.0274596 |
| OSMR | oncostatin M receptor | -0.0273379 |
| RPL28 | ribosomal protein L28 | -0.0272257 |
| AEBP2 | AE binding protein 2 | -0.0271687 |
| LDHA | lactate dehydrogenase A | -0.0269707 |
| HLA-A | major histocompatibility complex, class I, A | -0.0266614 |
| RPL12 | ribosomal protein L12 | -0.0265419 |
| YWHAE | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon | -0.0263336 |
| NRP1 | neuropilin 1 | -0.0262216 |
| CBX3 | chromobox homolog 3 | -0.0259241 |
| BPTF | bromodomain PHD finger transcription factor | -0.0255958 |
| SEPTIN9 | septin 9 | -0.0255468 |
| TTC28 | tetratricopeptide repeat domain 28 | -0.025388 |
| ATP2B1 | ATPase, Ca++ transporting, plasma membrane 1 | -0.0253628 |
| AREG | amphiregulin | -0.025245 |
| RPS6 | ribosomal protein S6 | -0.0251909 |
| SMYD3 | SET and MYND domain containing 3 | -0.0250262 |
| DNAH14 | dynein, axonemal, heavy chain 14 | -0.0247192 |
