| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine (dihydrochloride) perturbation in SW480 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine (dihydrochloride)_SW480 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| NKD1 | naked cuticle homolog 1 (Drosophila) | 0.317022 |
| ROBO2 | roundabout, axon guidance receptor, homolog 2 (Drosophila) | 0.169555 |
| NAV2 | neuron navigator 2 | 0.153078 |
| PLEC | plectin | 0.143753 |
| CDH13 | cadherin 13 | 0.109898 |
| SLC2A1 | solute carrier family 2 (facilitated glucose transporter), member 1 | 0.105042 |
| KRT18 | keratin 18, type I | 0.102384 |
| MAML2 | mastermind-like 2 (Drosophila) | 0.0839221 |
| PTPRN2 | protein tyrosine phosphatase, receptor type, N polypeptide 2 | 0.0816117 |
| VCL | vinculin | 0.0724676 |
| HDAC4 | histone deacetylase 4 | 0.0683429 |
| EEF2 | eukaryotic translation elongation factor 2 | 0.0591755 |
| CDK6 | cyclin-dependent kinase 6 | 0.0500907 |
| LOC112694756 | uncharaterized LOC112694756 | 0.0496434 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0493283 |
| ACTN1 | actinin, alpha 1 | 0.0492969 |
| INTS6 | integrator complex subunit 6 | 0.0489414 |
| ANO1 | anoctamin 1, calcium activated chloride channel | 0.0487128 |
| LDHA | lactate dehydrogenase A | 0.0468196 |
| ITGB4 | integrin, beta 4 | 0.0463293 |
| HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | 0.0443437 |
| AKAP12 | A kinase (PRKA) anchor protein 12 | 0.0441127 |
| ADGRL2 | adhesion G protein-coupled receptor L2 | 0.0440461 |
| GNPDA1 | glucosamine-6-phosphate deaminase 1 | 0.0438012 |
| FLNA | filamin A, alpha | 0.0426275 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.0424512 |
| ANXA2 | annexin A2 | 0.0417751 |
| KRT8 | keratin 8, type II | 0.0413913 |
| RAD51B | RAD51 paralog B | 0.0408934 |
| CEMIP | cell migration inducing protein, hyaluronan binding | 0.0397856 |
| FYN | FYN proto-oncogene, Src family tyrosine kinase | 0.0392931 |
| CCND1 | cyclin D1 | 0.0386875 |
| ITGA6 | integrin, alpha 6 | 0.0372627 |
| ACTN4 | actinin, alpha 4 | 0.0366306 |
| HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | 0.0357159 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0356134 |
| MED13 | mediator complex subunit 13 | 0.0352801 |
| EZR | ezrin | 0.0352477 |
| SDK1 | sidekick cell adhesion molecule 1 | 0.0344976 |
| SLC1A5 | solute carrier family 1 (neutral amino acid transporter), member 5 | 0.0341028 |
| SKAP1 | src kinase associated phosphoprotein 1 | 0.0340086 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | 0.0338429 |
| MSI2 | musashi RNA-binding protein 2 | 0.033841 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | 0.0334814 |
| VOPP1 | vesicular, overexpressed in cancer, prosurvival protein 1 | 0.0327265 |
| TPM4 | tropomyosin 4 | 0.0325461 |
| KIZ | kizuna centrosomal protein | 0.0313649 |
| GMDS | GDP-mannose 4,6-dehydratase | 0.0309728 |
| EIF4H | eukaryotic translation initiation factor 4H | 0.0307388 |
| CMIP | c-Maf inducing protein | 0.0305422 |
| DDX5 | DEAD (Asp-Glu-Ala-Asp) box helicase 5 | 0.030468 |
| MRPS6 | mitochondrial ribosomal protein S6 | 0.0296961 |
| DST | dystonin | 0.0296425 |
| RPS4X | ribosomal protein S4, X-linked | 0.0287453 |
| NPAS2 | neuronal PAS domain protein 2 | 0.0283964 |
| TBC1D8 | TBC1 domain family, member 8 (with GRAM domain) | 0.0280428 |
| IGFBP3 | insulin-like growth factor binding protein 3 | 0.0280105 |
| LPP | LIM domain containing preferred translocation partner in lipoma | 0.0279618 |
| MYOF | myoferlin | 0.027827 |
| RPL35A | ribosomal protein L35a | 0.0274599 |
| PPFIBP1 | PTPRF interacting protein, binding protein 1 (liprin beta 1) | 0.0266819 |
| TMSB4X | thymosin beta 4, X-linked | 0.0265677 |
| FLNB | filamin B, beta | 0.0265556 |
| ZBTB20 | zinc finger and BTB domain containing 20 | 0.026495 |
| MGAT5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | 0.0261586 |
| TPI1 | triosephosphate isomerase 1 | 0.0259381 |
| SPATA13 | spermatogenesis associated 13 | 0.0258208 |
| SLC16A3 | solute carrier family 16 (monocarboxylate transporter), member 3 | 0.025587 |
| RNF213 | ring finger protein 213 | 0.02536 |
| IMMP2L | IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) | 0.0253573 |
| CDKAL1 | CDK5 regulatory subunit associated protein 1-like 1 | 0.0252573 |
| ANXA3 | annexin A3 | 0.0252518 |
| TNIK | TRAF2 and NCK interacting kinase | 0.0252098 |
| MTCL1 | microtubule crosslinking factor 1 | 0.0251352 |
| WWOX | WW domain containing oxidoreductase | 0.0248845 |
| SYNE3 | spectrin repeat containing, nuclear envelope family member 3 | 0.0248228 |
| TNS4 | tensin 4 | 0.0241273 |
| NCOR2 | nuclear receptor corepressor 2 | 0.0240829 |
| IGF1R | insulin-like growth factor 1 receptor | 0.0239483 |
| SLC5A3 | solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 | 0.0237826 |
| CD46 | CD46 molecule, complement regulatory protein | 0.0237317 |
| JAG1 | jagged 1 | 0.0230284 |
| RPL3 | ribosomal protein L3 | 0.0226333 |
| NTSR1 | neurotensin receptor 1 (high affinity) | 0.0222378 |
| PRRC2A | proline-rich coiled-coil 2A | 0.022215 |
| CTBP2 | C-terminal binding protein 2 | 0.0221466 |
| TMEM163 | transmembrane protein 163 | 0.0219436 |
| MCL1 | myeloid cell leukemia 1 | 0.0216175 |
| EXOC4 | exocyst complex component 4 | 0.0214215 |
| LMNA | lamin A/C | 0.0210492 |
| SF3B1 | splicing factor 3b, subunit 1, 155kDa | 0.0208735 |
| DYNC2I1 | dynein 2 intermediate chain 1 | 0.0207614 |
| GRIK5 | glutamate receptor, ionotropic, kainate 5 | 0.0206539 |
| PTTG1IP | pituitary tumor-transforming 1 interacting protein | 0.020609 |
| SLC38A2 | solute carrier family 38, member 2 | 0.0205968 |
| PDGFA | platelet-derived growth factor alpha polypeptide | 0.0205918 |
| LRMDA | leucine rich melanocyte differentiation associated | 0.0204593 |
| TBC1D5 | TBC1 domain family, member 5 | 0.0204517 |
| LASP1 | LIM and SH3 protein 1 | 0.0202749 |
| EPHA2 | EPH receptor A2 | 0.0200627 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.249714 |
| RPS6 | ribosomal protein S6 | -0.0880041 |
| ITPR2 | inositol 1,4,5-trisphosphate receptor, type 2 | -0.0624438 |
| RPS2 | ribosomal protein S2 | -0.0614961 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | -0.055141 |
| NPM1 | nucleophosmin (nucleolar phosphoprotein B23, numatrin) | -0.0534451 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0496518 |
| TPT1 | tumor protein, translationally-controlled 1 | -0.0473477 |
| GOLGA4 | golgin A4 | -0.0461722 |
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.0461362 |
| SETD5 | SET domain containing 5 | -0.0403715 |
| SCAF11 | SR-related CTD-associated factor 11 | -0.0358853 |
| NKTR | natural killer cell triggering receptor | -0.0353272 |
| PCLO | piccolo presynaptic cytomatrix protein | -0.0343748 |
| RPL26 | ribosomal protein L26 | -0.0341247 |
| RBM39 | RNA binding motif protein 39 | -0.0335878 |
| AP3B1 | adaptor-related protein complex 3, beta 1 subunit | -0.0329843 |
| AKAP9 | A kinase (PRKA) anchor protein 9 | -0.0329646 |
| CALM2 | calmodulin 2 (phosphorylase kinase, delta) | -0.0328536 |
| SYT1 | synaptotagmin I | -0.0328292 |
| RPS24 | ribosomal protein S24 | -0.0327649 |
| RPS23 | ribosomal protein S23 | -0.0318491 |
| SBF2 | SET binding factor 2 | -0.0309524 |
| ITGA2 | integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) | -0.0306338 |
| TAF1D | TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa | -0.0302509 |
| ARID4B | AT rich interactive domain 4B (RBP1-like) | -0.0300266 |
| JMJD1C | jumonji domain containing 1C | -0.0298192 |
| DIAPH3 | diaphanous-related formin 3 | -0.0298165 |
| ANKHD1 | ankyrin repeat and KH domain containing 1 | -0.0293569 |
| RPL12 | ribosomal protein L12 | -0.0292979 |
| TXNIP | thioredoxin interacting protein | -0.0287666 |
| SPAG9 | sperm associated antigen 9 | -0.0281336 |
| RPL32 | ribosomal protein L32 | -0.0279987 |
| COG5 | component of oligomeric golgi complex 5 | -0.0278154 |
| RPL36A | ribosomal protein L36a | -0.0277637 |
| RPS5 | ribosomal protein S5 | -0.0276698 |
| ESYT2 | extended synaptotagmin-like protein 2 | -0.0276464 |
| RPS6KA3 | ribosomal protein S6 kinase, 90kDa, polypeptide 3 | -0.0274513 |
| DCBLD2 | discoidin, CUB and LCCL domain containing 2 | -0.0274074 |
| EIF1 | eukaryotic translation initiation factor 1 | -0.0272571 |
| SPRED2 | sprouty-related, EVH1 domain containing 2 | -0.0267479 |
| B4GALT5 | UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 | -0.0267415 |
| RPLP2 | ribosomal protein, large, P2 | -0.0266803 |
| CLTC | clathrin, heavy chain (Hc) | -0.0260311 |
| MAP3K2 | mitogen-activated protein kinase kinase kinase 2 | -0.0260103 |
| RPS15 | ribosomal protein S15 | -0.0259634 |
| COPB1 | coatomer protein complex, subunit beta 1 | -0.025844 |
| OXR1 | oxidation resistance 1 | -0.0258198 |
| TTC3 | tetratricopeptide repeat domain 3 | -0.025527 |
| OGA | O-GlcNAcase | -0.0255032 |
| RPLP1 | ribosomal protein, large, P1 | -0.0253766 |
| RICTOR | RPTOR independent companion of MTOR, complex 2 | -0.0252057 |
| MAN1A1 | mannosidase, alpha, class 1A, member 1 | -0.0252021 |
| PUM2 | pumilio RNA-binding family member 2 | -0.0250458 |
| VMP1 | vacuole membrane protein 1 | -0.0249612 |
| PAPOLA | poly(A) polymerase alpha | -0.0248333 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0242539 |
| ITFG1 | integrin alpha FG-GAP repeat containing 1 | -0.024229 |
| SENP5 | SUMO1/sentrin specific peptidase 5 | -0.02412 |
| PTPN14 | protein tyrosine phosphatase, non-receptor type 14 | -0.0241189 |
| RPLP0 | ribosomal protein, large, P0 | -0.0239122 |
| GOLGB1 | golgin B1 | -0.0238724 |
| BRD4 | bromodomain containing 4 | -0.0238545 |
| RPS25 | ribosomal protein S25 | -0.0237689 |
| ANO6 | anoctamin 6 | -0.0235739 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | -0.0234492 |
| UBXN4 | UBX domain protein 4 | -0.0234238 |
| CMAS | cytidine monophosphate N-acetylneuraminic acid synthetase | -0.0234166 |
| MARK3 | MAP/microtubule affinity-regulating kinase 3 | -0.0232311 |
| ARHGEF12 | Rho guanine nucleotide exchange factor (GEF) 12 | -0.0231497 |
| LMO7 | LIM domain 7 | -0.0230065 |
| ASNS | asparagine synthetase (glutamine-hydrolyzing) | -0.0229948 |
| RPL38 | ribosomal protein L38 | -0.0229674 |
| VGLL4 | vestigial-like family member 4 | -0.0229484 |
| KMT2E | lysine (K)-specific methyltransferase 2E | -0.0229335 |
| GAN | gigaxonin | -0.0228687 |
| FAF1 | Fas (TNFRSF6) associated factor 1 | -0.0228204 |
| PPP2R2A | protein phosphatase 2, regulatory subunit B, alpha | -0.022733 |
| RPS8 | ribosomal protein S8 | -0.0226424 |
| CBFB | core-binding factor, beta subunit | -0.0224528 |
| RFWD3 | ring finger and WD repeat domain 3 | -0.0224513 |
| RPL7 | ribosomal protein L7 | -0.0224294 |
| GLG1 | golgi glycoprotein 1 | -0.0223227 |
| STAU1 | staufen double-stranded RNA binding protein 1 | -0.0220221 |
| RPL28 | ribosomal protein L28 | -0.0219832 |
| PIK3C2A | phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha | -0.0218432 |
| ATP5F1B | ATP synthase F1 subunit beta | -0.021672 |
| STARD4 | StAR-related lipid transfer (START) domain containing 4 | -0.0216433 |
| TGFBR2 | transforming growth factor, beta receptor II (70/80kDa) | -0.0216076 |
| GOLT1B | golgi transport 1B | -0.0216026 |
| NIPBL | Nipped-B homolog (Drosophila) | -0.0215132 |
| USP34 | ubiquitin specific peptidase 34 | -0.0214817 |
| HELZ | helicase with zinc finger | -0.0213888 |
| EPS8 | epidermal growth factor receptor pathway substrate 8 | -0.0211618 |
| GCC2 | GRIP and coiled-coil domain containing 2 | -0.0211101 |
| TRPC4AP | transient receptor potential cation channel, subfamily C, member 4 associated protein | -0.0209843 |
| SMC5 | structural maintenance of chromosomes 5 | -0.0207741 |
| WASF2 | WAS protein family, member 2 | -0.0205753 |
| ITCH | itchy E3 ubiquitin protein ligase | -0.0205742 |
| RPS16 | ribosomal protein S16 | -0.0205649 |
