| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine perturbation in CHP-212 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine_CHP-212 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| AKAP12 | A kinase (PRKA) anchor protein 12 | 0.156033 |
| LPIN1 | lipin 1 | 0.137965 |
| MSI2 | musashi RNA-binding protein 2 | 0.120752 |
| NRG1 | neuregulin 1 | 0.108923 |
| GULP1 | GULP, engulfment adaptor PTB domain containing 1 | 0.0872079 |
| ACTG1 | actin gamma 1 | 0.0843886 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0823623 |
| NALF1 | NALCN channel auxiliary factor 1 | 0.080237 |
| SEPTIN9 | septin 9 | 0.0766596 |
| GPC5 | glypican 5 | 0.0730691 |
| TRIB2 | tribbles pseudokinase 2 | 0.0713011 |
| COL1A1 | collagen, type I, alpha 1 | 0.0697327 |
| AOPEP | aminopeptidase O (putative) | 0.0598561 |
| RNF213 | ring finger protein 213 | 0.0589778 |
| PRRC2B | proline-rich coiled-coil 2B | 0.0570862 |
| PRKCA | protein kinase C, alpha | 0.0567105 |
| TMSB10 | thymosin beta 10 | 0.0558495 |
| LRFN5 | leucine rich repeat and fibronectin type III domain containing 5 | 0.0556012 |
| PDGFRB | platelet-derived growth factor receptor, beta polypeptide | 0.0540605 |
| PRRC2C | proline-rich coiled-coil 2C | 0.0521075 |
| RPL35A | ribosomal protein L35a | 0.0519495 |
| EIF1 | eukaryotic translation initiation factor 1 | 0.050581 |
| DLC1 | DLC1 Rho GTPase activating protein | 0.0505681 |
| RAD51B | RAD51 paralog B | 0.0491212 |
| CEMIP | cell migration inducing protein, hyaluronan binding | 0.0488424 |
| RPL23 | ribosomal protein L23 | 0.0485383 |
| PLCB1 | phospholipase C, beta 1 (phosphoinositide-specific) | 0.047577 |
| MAML2 | mastermind-like 2 (Drosophila) | 0.0475041 |
| ZMIZ1 | zinc finger, MIZ-type containing 1 | 0.0474587 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.0472112 |
| MYCN | v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog | 0.0459675 |
| SMAD6 | SMAD family member 6 | 0.0458351 |
| THSD4 | thrombospondin, type I, domain containing 4 | 0.0457779 |
| UNC5C | unc-5 homolog C (C. elegans) | 0.0456944 |
| AHNAK | AHNAK nucleoprotein | 0.0449432 |
| LOC112694756 | uncharaterized LOC112694756 | 0.043725 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0428393 |
| RPS20 | ribosomal protein S20 | 0.0428155 |
| RBMS3 | RNA binding motif, single stranded interacting protein 3 | 0.0417292 |
| KIRREL1 | kirre like nephrin family adhesion molecule 1 | 0.0415154 |
| ZNF804A | zinc finger protein 804A | 0.0414586 |
| SMAD3 | SMAD family member 3 | 0.0413228 |
| AUTS2 | autism susceptibility candidate 2 | 0.0409243 |
| TPT1 | tumor protein, translationally-controlled 1 | 0.0404345 |
| RPL34 | ribosomal protein L34 | 0.0402365 |
| NCOR2 | nuclear receptor corepressor 2 | 0.0383561 |
| COL3A1 | collagen, type III, alpha 1 | 0.0382234 |
| ZNF609 | zinc finger protein 609 | 0.0377506 |
| NACA | nascent polypeptide-associated complex alpha subunit | 0.0376827 |
| NUMA1 | nuclear mitotic apparatus protein 1 | 0.0373531 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0366653 |
| CBX5 | chromobox homolog 5 | 0.0365082 |
| PTMA | prothymosin, alpha | 0.0364865 |
| UNC5B | unc-5 homolog B (C. elegans) | 0.036293 |
| GSE1 | Gse1 coiled-coil protein | 0.0360263 |
| SLC6A6 | solute carrier family 6 (neurotransmitter transporter), member 6 | 0.0358555 |
| CUX1 | cut-like homeobox 1 | 0.035604 |
| KPNB1 | karyopherin (importin) beta 1 | 0.0354964 |
| UBAP2L | ubiquitin associated protein 2-like | 0.0352653 |
| MDM2 | MDM2 proto-oncogene, E3 ubiquitin protein ligase | 0.0347848 |
| COL18A1 | collagen, type XVIII, alpha 1 | 0.0346785 |
| HDLBP | high density lipoprotein binding protein | 0.0342605 |
| MAP4 | microtubule-associated protein 4 | 0.0334387 |
| RHOA | ras homolog family member A | 0.0332742 |
| GNPDA1 | glucosamine-6-phosphate deaminase 1 | 0.0331888 |
| ANKRD10 | ankyrin repeat domain 10 | 0.0331406 |
| KLF7 | Kruppel-like factor 7 (ubiquitous) | 0.0328795 |
| CPED1 | cadherin-like and PC-esterase domain containing 1 | 0.0328151 |
| CDH2 | cadherin 2, type 1, N-cadherin (neuronal) | 0.032815 |
| GPRC5A | G protein-coupled receptor, class C, group 5, member A | 0.0327723 |
| TIMP3 | TIMP metallopeptidase inhibitor 3 | 0.0325153 |
| EHMT1 | euchromatic histone-lysine N-methyltransferase 1 | 0.0324185 |
| ANK3 | ankyrin 3, node of Ranvier (ankyrin G) | 0.0322722 |
| TCF12 | transcription factor 12 | 0.0321875 |
| PRKD1 | protein kinase D1 | 0.0320422 |
| RPL13A | ribosomal protein L13a | 0.0319044 |
| P4HA2 | prolyl 4-hydroxylase, alpha polypeptide II | 0.0317387 |
| DPH6 | diphthamine biosynthesis 6 | 0.0317115 |
| ANXA2 | annexin A2 | 0.0316763 |
| CADM2 | cell adhesion molecule 2 | 0.0316115 |
| HSPA8 | heat shock 70kDa protein 8 | 0.0315983 |
| KCNIP4 | Kv channel interacting protein 4 | 0.0314261 |
| LSAMP | limbic system-associated membrane protein | 0.0310702 |
| RPTOR | regulatory associated protein of MTOR, complex 1 | 0.0309874 |
| YEATS2 | YEATS domain containing 2 | 0.0309607 |
| DHFR | dihydrofolate reductase | 0.0309099 |
| MEF2D | myocyte enhancer factor 2D | 0.0308993 |
| USP9X | ubiquitin specific peptidase 9, X-linked | 0.0305313 |
| ATRNL1 | attractin-like 1 | 0.0302485 |
| RPL19 | ribosomal protein L19 | 0.0298873 |
| CALU | calumenin | 0.0297787 |
| EWSR1 | EWS RNA-binding protein 1 | 0.0297666 |
| VCAN | versican | 0.0297405 |
| MKLN1 | muskelin 1, intracellular mediator containing kelch motifs | 0.0296883 |
| IL1RAPL1 | interleukin 1 receptor accessory protein-like 1 | 0.0295615 |
| RUNX1T1 | runt-related transcription factor 1; translocated to, 1 (cyclin D-related) | 0.0294846 |
| PGK1 | phosphoglycerate kinase 1 | 0.029414 |
| CENPF | centromere protein F, 350/400kDa | 0.0293358 |
| DNAH14 | dynein, axonemal, heavy chain 14 | 0.0291696 |
| BAZ1A | bromodomain adjacent to zinc finger domain, 1A | 0.0290331 |
| Symbol | Name | Standardized Value |
|---|---|---|
| DDX1 | DEAD (Asp-Glu-Ala-Asp) box helicase 1 | -0.183087 |
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.0996173 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | -0.0992513 |
| IGF2 | insulin-like growth factor 2 | -0.0965093 |
| RPS2 | ribosomal protein S2 | -0.0854952 |
| ITPRID2 | ITPR interacting domain containing 2 | -0.0659067 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | -0.0654874 |
| PTPRD | protein tyrosine phosphatase, receptor type, D | -0.0643814 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | -0.0630306 |
| KMT2E | lysine (K)-specific methyltransferase 2E | -0.061759 |
| MEIS2 | Meis homeobox 2 | -0.061102 |
| FNDC3A | fibronectin type III domain containing 3A | -0.0581566 |
| FNBP1 | formin binding protein 1 | -0.0553965 |
| PLAT | plasminogen activator, tissue | -0.0549732 |
| TLE4 | transducin-like enhancer of split 4 | -0.0535804 |
| SLIT2 | slit homolog 2 (Drosophila) | -0.0497886 |
| ARID5B | AT rich interactive domain 5B (MRF1-like) | -0.0490659 |
| UBR5 | ubiquitin protein ligase E3 component n-recognin 5 | -0.0484412 |
| TPST1 | tyrosylprotein sulfotransferase 1 | -0.0481381 |
| SPARC | secreted protein, acidic, cysteine-rich (osteonectin) | -0.04784 |
| PCBP2 | poly(rC) binding protein 2 | -0.047689 |
| SLITRK6 | SLIT and NTRK-like family, member 6 | -0.0467554 |
| ZMYM2 | zinc finger, MYM-type 2 | -0.0463838 |
| PELI1 | pellino E3 ubiquitin protein ligase 1 | -0.0451632 |
| STAT3 | signal transducer and activator of transcription 3 (acute-phase response factor) | -0.0447064 |
| PIAS1 | protein inhibitor of activated STAT, 1 | -0.044177 |
| NEK7 | NIMA-related kinase 7 | -0.0435035 |
| LGR5 | leucine-rich repeat containing G protein-coupled receptor 5 | -0.0432584 |
| ZNF207 | zinc finger protein 207 | -0.0395736 |
| TAOK1 | TAO kinase 1 | -0.0389356 |
| VCL | vinculin | -0.0377436 |
| NPEPPS | aminopeptidase puromycin sensitive | -0.0369398 |
| MBTD1 | mbt domain containing 1 | -0.0365357 |
| MBNL2 | muscleblind-like splicing regulator 2 | -0.0360944 |
| MXI1 | MAX interactor 1, dimerization protein | -0.0349283 |
| MYO9A | myosin IXA | -0.0347349 |
| EYA1 | EYA transcriptional coactivator and phosphatase 1 | -0.0342109 |
| ANKHD1 | ankyrin repeat and KH domain containing 1 | -0.0340165 |
| ITGB1 | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | -0.033936 |
| RYBP | RING1 and YY1 binding protein | -0.0339025 |
| CSNK1A1 | casein kinase 1, alpha 1 | -0.0336754 |
| PPFIBP1 | PTPRF interacting protein, binding protein 1 (liprin beta 1) | -0.0334559 |
| ROBO2 | roundabout, axon guidance receptor, homolog 2 (Drosophila) | -0.0332362 |
| ERC2 | ELKS/RAB6-interacting/CAST family member 2 | -0.0328662 |
| SNX14 | sorting nexin 14 | -0.0328371 |
| SRP54 | signal recognition particle 54kDa | -0.0324756 |
| SPAG9 | sperm associated antigen 9 | -0.0323424 |
| P4HA1 | prolyl 4-hydroxylase, alpha polypeptide I | -0.0321668 |
| HELZ | helicase with zinc finger | -0.0321214 |
| PAPOLA | poly(A) polymerase alpha | -0.0320538 |
| HIF1A | hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) | -0.0320403 |
| ERBIN | erbb2 interacting protein | -0.0316012 |
| PDE10A | phosphodiesterase 10A | -0.0315549 |
| PCM1 | pericentriolar material 1 | -0.0313653 |
| AKAP9 | A kinase (PRKA) anchor protein 9 | -0.0309243 |
| PUM2 | pumilio RNA-binding family member 2 | -0.0309197 |
| NOP58 | NOP58 ribonucleoprotein | -0.0307087 |
| MED13 | mediator complex subunit 13 | -0.0305643 |
| FHIP1A | FHF complex subunit HOOK interacting protein 1A | -0.0304627 |
| ARIH1 | ariadne RBR E3 ubiquitin protein ligase 1 | -0.0303815 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0303587 |
| BOD1L1 | biorientation of chromosomes in cell division 1-like 1 | -0.0303255 |
| ACSL3 | acyl-CoA synthetase long-chain family member 3 | -0.0301874 |
| IARS2 | isoleucyl-tRNA synthetase 2, mitochondrial | -0.0300374 |
| KMT2C | lysine (K)-specific methyltransferase 2C | -0.0298751 |
| NCAM2 | neural cell adhesion molecule 2 | -0.0298024 |
| CTNNB1 | catenin (cadherin-associated protein), beta 1, 88kDa | -0.0296062 |
| ANKRD28 | ankyrin repeat domain 28 | -0.029403 |
| ZSWIM6 | zinc finger, SWIM-type containing 6 | -0.0293712 |
| PPP1R13B | protein phosphatase 1, regulatory subunit 13B | -0.0290861 |
| ASCC3 | activating signal cointegrator 1 complex subunit 3 | -0.0287889 |
| GLG1 | golgi glycoprotein 1 | -0.0287167 |
| GNAS | GNAS complex locus | -0.0286896 |
| ASH1L | ash1 (absent, small, or homeotic)-like (Drosophila) | -0.0285424 |
| THBS1 | thrombospondin 1 | -0.0285194 |
| MTDH | metadherin | -0.028445 |
| NIPBL | Nipped-B homolog (Drosophila) | -0.0282691 |
| ARHGAP5 | Rho GTPase activating protein 5 | -0.0276841 |
| MAP3K2 | mitogen-activated protein kinase kinase kinase 2 | -0.0276642 |
| RTN4 | reticulon 4 | -0.0273346 |
| POTEF | POTE ankyrin domain family, member F | -0.0271718 |
| SIK2 | salt-inducible kinase 2 | -0.0271076 |
| GLCCI1 | glucocorticoid induced 1 | -0.026839 |
| PPP4R2 | protein phosphatase 4, regulatory subunit 2 | -0.0268336 |
| EPRS1 | glutamyl-prolyl-tRNA synthetase 1 | -0.0268275 |
| PRPF4B | pre-mRNA processing factor 4B | -0.0261616 |
| DNMBP | dynamin binding protein | -0.0259206 |
| TLN1 | talin 1 | -0.0259036 |
| KTN1 | kinectin 1 (kinesin receptor) | -0.0258916 |
| CLTC | clathrin, heavy chain (Hc) | -0.0256517 |
| AQR | aquarius intron-binding spliceosomal factor | -0.0255848 |
| MEF2A | myocyte enhancer factor 2A | -0.0253828 |
| ATP1B3 | ATPase, Na+/K+ transporting, beta 3 polypeptide | -0.0251963 |
| ATOSA | atos homolog A | -0.0251762 |
| HIP1 | huntingtin interacting protein 1 | -0.024951 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0248968 |
| RIOK3 | RIO kinase 3 | -0.024882 |
| ANO6 | anoctamin 6 | -0.0247749 |
| UBE3A | ubiquitin protein ligase E3A | -0.024277 |
| RAB30 | RAB30, member RAS oncogene family | -0.0241738 |
