| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine perturbation in COLO 205 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine_COLO 205 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| CHST11 | carbohydrate (chondroitin 4) sulfotransferase 11 | 0.119304 |
| DSCAM | Down syndrome cell adhesion molecule | 0.111235 |
| SRRM2 | serine/arginine repetitive matrix 2 | 0.108655 |
| SAMD4A | sterile alpha motif domain containing 4A | 0.101691 |
| LMO7 | LIM domain 7 | 0.099083 |
| MBNL2 | muscleblind-like splicing regulator 2 | 0.0969502 |
| SPATA13 | spermatogenesis associated 13 | 0.0927318 |
| EXT1 | exostosin glycosyltransferase 1 | 0.0851986 |
| AKAP13 | A kinase (PRKA) anchor protein 13 | 0.0806393 |
| MGAT5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | 0.0796055 |
| HLA-B | major histocompatibility complex, class I, B | 0.0791566 |
| EZR | ezrin | 0.0789588 |
| EPHB2 | EPH receptor B2 | 0.0761967 |
| SMAD3 | SMAD family member 3 | 0.0728628 |
| CCNL1 | cyclin L1 | 0.0701253 |
| TRIO | trio Rho guanine nucleotide exchange factor | 0.0674475 |
| EPS8 | epidermal growth factor receptor pathway substrate 8 | 0.0665229 |
| N4BP2L2 | NEDD4 binding protein 2-like 2 | 0.0653013 |
| SLC2A1 | solute carrier family 2 (facilitated glucose transporter), member 1 | 0.0648386 |
| P4HB | prolyl 4-hydroxylase, beta polypeptide | 0.061833 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.060788 |
| SHB | Src homology 2 domain containing adaptor protein B | 0.060359 |
| SPTBN1 | spectrin, beta, non-erythrocytic 1 | 0.059705 |
| SNTB1 | syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) | 0.0545233 |
| MLPH | melanophilin | 0.0542167 |
| FNDC3B | fibronectin type III domain containing 3B | 0.0537177 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | 0.0535346 |
| IRS2 | insulin receptor substrate 2 | 0.0531802 |
| HLA-A | major histocompatibility complex, class I, A | 0.0519543 |
| COPA | coatomer protein complex, subunit alpha | 0.0518773 |
| MSI2 | musashi RNA-binding protein 2 | 0.050912 |
| RNF213 | ring finger protein 213 | 0.0507687 |
| IRF1 | interferon regulatory factor 1 | 0.0507008 |
| OAS1 | 2'-5'-oligoadenylate synthetase 1, 40/46kDa | 0.0495347 |
| LRCH1 | leucine-rich repeats and calponin homology (CH) domain containing 1 | 0.0493057 |
| PADI1 | peptidyl arginine deiminase, type I | 0.0490744 |
| TUFT1 | tuftelin 1 | 0.0470488 |
| VMP1 | vacuole membrane protein 1 | 0.0463338 |
| FAT1 | FAT atypical cadherin 1 | 0.0461562 |
| OAS3 | 2'-5'-oligoadenylate synthetase 3, 100kDa | 0.0458545 |
| SQSTM1 | sequestosome 1 | 0.0454771 |
| BCL2L1 | BCL2-like 1 | 0.0450133 |
| MPRIP | myosin phosphatase Rho interacting protein | 0.044888 |
| SERINC5 | serine incorporator 5 | 0.0438347 |
| CTBP2 | C-terminal binding protein 2 | 0.0435064 |
| SEC61A1 | Sec61 alpha 1 subunit (S. cerevisiae) | 0.043429 |
| ANXA2 | annexin A2 | 0.0431732 |
| ZNF292 | zinc finger protein 292 | 0.0428581 |
| AFF1 | AF4/FMR2 family, member 1 | 0.0425116 |
| ATXN1 | ataxin 1 | 0.0422637 |
| MYO10 | myosin X | 0.0416158 |
| EPSTI1 | epithelial stromal interaction 1 (breast) | 0.0415788 |
| GPRC5A | G protein-coupled receptor, class C, group 5, member A | 0.0415186 |
| EGLN3 | egl-9 family hypoxia-inducible factor 3 | 0.041337 |
| GFPT1 | glutamine--fructose-6-phosphate transaminase 1 | 0.0409089 |
| KANSL1 | KAT8 regulatory NSL complex subunit 1 | 0.0401348 |
| ARHGEF10L | Rho guanine nucleotide exchange factor (GEF) 10-like | 0.0396426 |
| SYNE2 | spectrin repeat containing, nuclear envelope 2 | 0.039498 |
| FOS | FBJ murine osteosarcoma viral oncogene homolog | 0.0393526 |
| ABHD2 | abhydrolase domain containing 2 | 0.0391248 |
| OARD1 | O-acyl-ADP-ribose deacylase 1 | 0.0385554 |
| RHOBTB3 | Rho-related BTB domain containing 3 | 0.0385521 |
| RERE | arginine-glutamic acid dipeptide (RE) repeats | 0.0384703 |
| UBAC2 | UBA domain containing 2 | 0.0376843 |
| MTUS1 | microtubule associated tumor suppressor 1 | 0.0375511 |
| LPCAT1 | lysophosphatidylcholine acyltransferase 1 | 0.037221 |
| FNIP1 | folliculin interacting protein 1 | 0.0366176 |
| PPP1R15A | protein phosphatase 1, regulatory subunit 15A | 0.036397 |
| MAP4K4 | mitogen-activated protein kinase kinase kinase kinase 4 | 0.0361316 |
| ETNK1 | ethanolamine kinase 1 | 0.0355175 |
| EIF1 | eukaryotic translation initiation factor 1 | 0.0351987 |
| DHFR | dihydrofolate reductase | 0.0351867 |
| PHF3 | PHD finger protein 3 | 0.035116 |
| GNPDA1 | glucosamine-6-phosphate deaminase 1 | 0.0349978 |
| PAN3 | PAN3 poly(A) specific ribonuclease subunit | 0.0347277 |
| SEC31A | SEC31 homolog A (S. cerevisiae) | 0.0347057 |
| SIPA1L2 | signal-induced proliferation-associated 1 like 2 | 0.0344616 |
| PGK1 | phosphoglycerate kinase 1 | 0.033958 |
| TOX3 | TOX high mobility group box family member 3 | 0.0338215 |
| STAT2 | signal transducer and activator of transcription 2, 113kDa | 0.0337775 |
| CEMIP2 | cell migration inducing hyaluronidase 2 | 0.033625 |
| EGR1 | early growth response 1 | 0.0336207 |
| ATP2C2 | ATPase, Ca++ transporting, type 2C, member 2 | 0.0330593 |
| TRIM25 | tripartite motif containing 25 | 0.0320191 |
| HLA-C | major histocompatibility complex, class I, C | 0.0318842 |
| LRBA | LPS-responsive vesicle trafficking, beach and anchor containing | 0.0315608 |
| KAZN | kazrin, periplakin interacting protein | 0.0314867 |
| DSCAML1 | Down syndrome cell adhesion molecule like 1 | 0.0310077 |
| NCOR2 | nuclear receptor corepressor 2 | 0.0309773 |
| BCLAF1 | BCL2-associated transcription factor 1 | 0.0308668 |
| GOLPH3L | golgi phosphoprotein 3-like | 0.030838 |
| UBAP1 | ubiquitin associated protein 1 | 0.0307578 |
| CMIP | c-Maf inducing protein | 0.0307034 |
| PTPN12 | protein tyrosine phosphatase, non-receptor type 12 | 0.0306133 |
| AHI1 | Abelson helper integration site 1 | 0.0303535 |
| MACC1 | metastasis associated in colon cancer 1 | 0.0302493 |
| COPG1 | coatomer protein complex, subunit gamma 1 | 0.0301192 |
| SETD5 | SET domain containing 5 | 0.0299985 |
| RBM33 | RNA binding motif protein 33 | 0.0298105 |
| KRT8 | keratin 8, type II | 0.0297432 |
| Symbol | Name | Standardized Value |
|---|---|---|
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.188839 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | -0.151365 |
| CYP3A5 | cytochrome P450, family 3, subfamily A, polypeptide 5 | -0.10127 |
| B2M | beta-2-microglobulin | -0.0988097 |
| NPSR1 | neuropeptide S receptor 1 | -0.0820658 |
| IFNGR1 | interferon gamma receptor 1 | -0.0780293 |
| INTS6 | integrator complex subunit 6 | -0.0726387 |
| EPCAM | epithelial cell adhesion molecule | -0.068028 |
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.064377 |
| ENO1 | enolase 1, (alpha) | -0.057914 |
| ERRFI1 | ERBB receptor feedback inhibitor 1 | -0.0547863 |
| PLSCR2 | phospholipid scramblase 2 | -0.0513485 |
| XAF1 | XIAP associated factor 1 | -0.0500153 |
| STS | steroid sulfatase (microsomal), isozyme S | -0.0499941 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | -0.0499758 |
| IFI6 | interferon, alpha-inducible protein 6 | -0.0455658 |
| DSPP | dentin sialophosphoprotein | -0.0450667 |
| PERP | PERP, TP53 apoptosis effector | -0.0435751 |
| IFIT3 | interferon-induced protein with tetratricopeptide repeats 3 | -0.0433223 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0413235 |
| ZSWIM6 | zinc finger, SWIM-type containing 6 | -0.0401841 |
| CLTC | clathrin, heavy chain (Hc) | -0.0386875 |
| FNDC3A | fibronectin type III domain containing 3A | -0.0380829 |
| POF1B | premature ovarian failure, 1B | -0.0371448 |
| RPS2 | ribosomal protein S2 | -0.0369282 |
| STAT1 | signal transducer and activator of transcription 1, 91kDa | -0.0367025 |
| CALM2 | calmodulin 2 (phosphorylase kinase, delta) | -0.0366076 |
| EFNB2 | ephrin-B2 | -0.0364923 |
| OAS2 | 2'-5'-oligoadenylate synthetase 2, 69/71kDa | -0.034735 |
| NCOA7 | nuclear receptor coactivator 7 | -0.034276 |
| GCLC | glutamate-cysteine ligase, catalytic subunit | -0.0340876 |
| ZDHHC20 | zinc finger, DHHC-type containing 20 | -0.03405 |
| CEP350 | centrosomal protein 350kDa | -0.033759 |
| ASPH | aspartate beta-hydroxylase | -0.0334827 |
| LCN2 | lipocalin 2 | -0.032732 |
| SAMD9 | sterile alpha motif domain containing 9 | -0.0322024 |
| P4HA1 | prolyl 4-hydroxylase, alpha polypeptide I | -0.0320919 |
| APOL1 | apolipoprotein L, 1 | -0.0319531 |
| SH3GLB1 | SH3-domain GRB2-like endophilin B1 | -0.0315311 |
| PRELID2 | PRELI domain containing 2 | -0.0301605 |
| ARL6IP1 | ADP-ribosylation factor-like 6 interacting protein 1 | -0.0291557 |
| VWA8 | von Willebrand factor A domain containing 8 | -0.0278963 |
| NDRG1 | N-myc downstream regulated 1 | -0.0276978 |
| MUC20 | mucin 20, cell surface associated | -0.0275561 |
| LIMA1 | LIM domain and actin binding 1 | -0.0274621 |
| ENOX1 | ecto-NOX disulfide-thiol exchanger 1 | -0.0273835 |
| SAMD12 | sterile alpha motif domain containing 12 | -0.0272753 |
| PDIA3 | protein disulfide isomerase family A, member 3 | -0.0271473 |
| IRF2BP2 | interferon regulatory factor 2 binding protein 2 | -0.0271262 |
| PTMA | prothymosin, alpha | -0.0270473 |
| SDC4 | syndecan 4 | -0.026826 |
| PTBP3 | polypyrimidine tract binding protein 3 | -0.0267091 |
| AREG | amphiregulin | -0.0265212 |
| SPIDR | scaffolding protein involved in DNA repair | -0.0264661 |
| MT2A | metallothionein 2A | -0.0262952 |
| KRT19 | keratin 19, type I | -0.025813 |
| B3GALT5 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 | -0.0252906 |
| NIPBL | Nipped-B homolog (Drosophila) | -0.0252648 |
| UBR2 | ubiquitin protein ligase E3 component n-recognin 2 | -0.0249873 |
| ZC3H13 | zinc finger CCCH-type containing 13 | -0.0246468 |
| PRPF40A | PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) | -0.0244223 |
| ELF3 | E74-like factor 3 (ets domain transcription factor, epithelial-specific ) | -0.0241845 |
| RAB2A | RAB2A, member RAS oncogene family | -0.0240248 |
| S100A9 | S100 calcium binding protein A9 | -0.0238384 |
| RPS6 | ribosomal protein S6 | -0.0235602 |
| NCOR1 | nuclear receptor corepressor 1 | -0.023402 |
| RYBP | RING1 and YY1 binding protein | -0.0232931 |
| RSAD2 | radical S-adenosyl methionine domain containing 2 | -0.0232591 |
| RPL38 | ribosomal protein L38 | -0.0229358 |
| CST3 | cystatin C | -0.0228106 |
| SENP5 | SUMO1/sentrin specific peptidase 5 | -0.022781 |
| PAPOLA | poly(A) polymerase alpha | -0.0226851 |
| DNAJA1 | DnaJ (Hsp40) homolog, subfamily A, member 1 | -0.0225902 |
| SLC40A1 | solute carrier family 40 (iron-regulated transporter), member 1 | -0.0225006 |
| ARRDC3 | arrestin domain containing 3 | -0.0223096 |
| XPO1 | exportin 1 | -0.0222622 |
| MICU2 | mitochondrial calcium uptake 2 | -0.0222338 |
| FTL | ferritin, light polypeptide | -0.0222194 |
| IFI27 | interferon, alpha-inducible protein 27 | -0.0219815 |
| FMN1 | formin 1 | -0.0218291 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0217925 |
| SEC62 | SEC62 homolog (S. cerevisiae) | -0.0217826 |
| SLC16A3 | solute carrier family 16 (monocarboxylate transporter), member 3 | -0.0217439 |
| SSH2 | slingshot protein phosphatase 2 | -0.0214448 |
| GOLM2 | golgi membrane protein 2 | -0.0214353 |
| LDHA | lactate dehydrogenase A | -0.0213895 |
| SKP1 | S-phase kinase-associated protein 1 | -0.0212568 |
| RPL12 | ribosomal protein L12 | -0.0211792 |
| ARHGAP26 | Rho GTPase activating protein 26 | -0.0211062 |
| PPP6R3 | protein phosphatase 6, regulatory subunit 3 | -0.02087 |
| FARP2 | FERM, RhoGEF and pleckstrin domain protein 2 | -0.0207924 |
| TRIM56 | tripartite motif containing 56 | -0.0207448 |
| SLC30A1 | solute carrier family 30 (zinc transporter), member 1 | -0.0207376 |
| BNIP3L | BCL2/adenovirus E1B 19kDa interacting protein 3-like | -0.020645 |
| PPARA | peroxisome proliferator-activated receptor alpha | -0.0204582 |
| PNRC1 | proline-rich nuclear receptor coactivator 1 | -0.0204298 |
| IER3 | immediate early response 3 | -0.020418 |
| EIF2AK2 | eukaryotic translation initiation factor 2-alpha kinase 2 | -0.0202653 |
| KDM3A | lysine (K)-specific demethylase 3A | -0.020213 |
| DSG2 | desmoglein 2 | -0.0201946 |
