| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine perturbation in LS 180 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine_LS 180 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| SRRM2 | serine/arginine repetitive matrix 2 | 0.0947263 |
| LMO7 | LIM domain 7 | 0.0877562 |
| MDM2 | MDM2 proto-oncogene, E3 ubiquitin protein ligase | 0.0701456 |
| FAT1 | FAT atypical cadherin 1 | 0.0623396 |
| CEMIP | cell migration inducing protein, hyaluronan binding | 0.0616642 |
| VEGFA | vascular endothelial growth factor A | 0.0541766 |
| MPRIP | myosin phosphatase Rho interacting protein | 0.0539006 |
| KRT8 | keratin 8, type II | 0.0494799 |
| TNS4 | tensin 4 | 0.049166 |
| ZFAND3 | zinc finger, AN1-type domain 3 | 0.0433453 |
| PLEC | plectin | 0.0399283 |
| ABHD2 | abhydrolase domain containing 2 | 0.039661 |
| NCOR2 | nuclear receptor corepressor 2 | 0.0381059 |
| CTBP2 | C-terminal binding protein 2 | 0.037141 |
| RPL35A | ribosomal protein L35a | 0.0368947 |
| RNF43 | ring finger protein 43 | 0.0365667 |
| PRAG1 | PEAK1 related, kinase-activating pseudokinase 1 | 0.0355044 |
| ATXN1 | ataxin 1 | 0.0348687 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0342083 |
| FNBP4 | formin binding protein 4 | 0.0340781 |
| MYH9 | myosin, heavy chain 9, non-muscle | 0.0337691 |
| HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | 0.0334916 |
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | 0.0328444 |
| RPS6 | ribosomal protein S6 | 0.0327133 |
| AKAP9 | A kinase (PRKA) anchor protein 9 | 0.031726 |
| ITGA6 | integrin, alpha 6 | 0.0314837 |
| BTBD9 | BTB (POZ) domain containing 9 | 0.0314225 |
| UBR4 | ubiquitin protein ligase E3 component n-recognin 4 | 0.0306515 |
| RPL9 | ribosomal protein L9 | 0.0301886 |
| ENO2 | enolase 2 (gamma, neuronal) | 0.0301528 |
| FBXW7 | F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase | 0.0301399 |
| TANC1 | tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 | 0.0299871 |
| PTEN | phosphatase and tensin homolog | 0.0299138 |
| TBC1D8 | TBC1 domain family, member 8 (with GRAM domain) | 0.0291979 |
| NUMA1 | nuclear mitotic apparatus protein 1 | 0.0290635 |
| RPLP2 | ribosomal protein, large, P2 | 0.028914 |
| AGAP1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | 0.0287337 |
| RPS8 | ribosomal protein S8 | 0.0284924 |
| RPS23 | ribosomal protein S23 | 0.0283274 |
| TAF15 | TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa | 0.0280021 |
| MGAT5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | 0.0275938 |
| TPT1 | tumor protein, translationally-controlled 1 | 0.0274706 |
| FLNB | filamin B, beta | 0.0264907 |
| DSCAM | Down syndrome cell adhesion molecule | 0.0263727 |
| REV3L | REV3-like, polymerase (DNA directed), zeta, catalytic subunit | 0.0260891 |
| MUC5B | mucin 5B, oligomeric mucus/gel-forming | 0.0260157 |
| N4BP2L2 | NEDD4 binding protein 2-like 2 | 0.0260139 |
| DNM2 | dynamin 2 | 0.0259743 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | 0.025913 |
| RNF145 | ring finger protein 145 | 0.0258472 |
| LUC7L3 | LUC7-like 3 (S. cerevisiae) | 0.0258072 |
| ASCC3 | activating signal cointegrator 1 complex subunit 3 | 0.0257892 |
| NEBL | nebulette | 0.025536 |
| WSB1 | WD repeat and SOCS box containing 1 | 0.0254706 |
| RPS29 | ribosomal protein S29 | 0.0253981 |
| CMIP | c-Maf inducing protein | 0.0253576 |
| TRIM2 | tripartite motif containing 2 | 0.0250721 |
| EIF4B | eukaryotic translation initiation factor 4B | 0.0249711 |
| HNRNPDL | heterogeneous nuclear ribonucleoprotein D-like | 0.0249329 |
| POLR2B | polymerase (RNA) II (DNA directed) polypeptide B, 140kDa | 0.0248165 |
| MICAL2 | microtubule associated monooxygenase, calponin and LIM domain containing 2 | 0.0247505 |
| PPP3CA | protein phosphatase 3, catalytic subunit, alpha isozyme | 0.0247468 |
| TTC17 | tetratricopeptide repeat domain 17 | 0.0246806 |
| TMSB10 | thymosin beta 10 | 0.0246456 |
| VMP1 | vacuole membrane protein 1 | 0.024611 |
| SFPQ | splicing factor proline/glutamine-rich | 0.0245329 |
| RPS12 | ribosomal protein S12 | 0.0244631 |
| PHLPP1 | PH domain and leucine rich repeat protein phosphatase 1 | 0.0237936 |
| RBM25 | RNA binding motif protein 25 | 0.0237923 |
| RERE | arginine-glutamic acid dipeptide (RE) repeats | 0.0236815 |
| MUC6 | mucin 6, oligomeric mucus/gel-forming | 0.0236285 |
| MACF1 | microtubule-actin crosslinking factor 1 | 0.0232965 |
| TNRC18 | trinucleotide repeat containing 18 | 0.0232878 |
| EFNA5 | ephrin-A5 | 0.0229974 |
| OGA | O-GlcNAcase | 0.022879 |
| SAMD4A | sterile alpha motif domain containing 4A | 0.0228742 |
| HSPG2 | heparan sulfate proteoglycan 2 | 0.0228466 |
| ACTG1 | actin gamma 1 | 0.022623 |
| MON2 | MON2 homolog (S. cerevisiae) | 0.0226005 |
| ARID1B | AT rich interactive domain 1B (SWI1-like) | 0.022588 |
| HDAC4 | histone deacetylase 4 | 0.0225364 |
| ESRP1 | epithelial splicing regulatory protein 1 | 0.0224766 |
| ANXA11 | annexin A11 | 0.0223901 |
| PTK2 | protein tyrosine kinase 2 | 0.0222512 |
| GAREM1 | GRB2 associated regulator of MAPK1 subtype 1 | 0.0221523 |
| MYO5B | myosin VB | 0.0221211 |
| BLCAP | bladder cancer associated protein | 0.0219749 |
| PRRC2C | proline-rich coiled-coil 2C | 0.0219317 |
| DHFR | dihydrofolate reductase | 0.0219113 |
| MED13 | mediator complex subunit 13 | 0.0218996 |
| KMT2C | lysine (K)-specific methyltransferase 2C | 0.0218035 |
| MINK1 | misshapen-like kinase 1 | 0.021777 |
| RBCK1 | RanBP-type and C3HC4-type zinc finger containing 1 | 0.0217655 |
| LRCH1 | leucine-rich repeats and calponin homology (CH) domain containing 1 | 0.0217344 |
| GSK3B | glycogen synthase kinase 3 beta | 0.0215737 |
| KMT2D | lysine (K)-specific methyltransferase 2D | 0.021568 |
| AGRN | agrin | 0.0214652 |
| AKAP13 | A kinase (PRKA) anchor protein 13 | 0.0214408 |
| RPL11 | ribosomal protein L11 | 0.0214133 |
| SHB | Src homology 2 domain containing adaptor protein B | 0.0213614 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.292451 |
| HSPA5 | heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) | -0.229748 |
| ATP1B1 | ATPase, Na+/K+ transporting, beta 1 polypeptide | -0.219048 |
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.144653 |
| NPSR1 | neuropeptide S receptor 1 | -0.108735 |
| AHNAK | AHNAK nucleoprotein | -0.084532 |
| HSPD1 | heat shock 60kDa protein 1 (chaperonin) | -0.0844844 |
| LDHA | lactate dehydrogenase A | -0.0840309 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0818851 |
| FTH1 | ferritin, heavy polypeptide 1 | -0.0818044 |
| ANXA2 | annexin A2 | -0.0809917 |
| ENO1 | enolase 1, (alpha) | -0.0710763 |
| P4HA1 | prolyl 4-hydroxylase, alpha polypeptide I | -0.0661563 |
| PTMA | prothymosin, alpha | -0.0655264 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | -0.0625858 |
| TPM4 | tropomyosin 4 | -0.0593594 |
| CD55 | CD55 molecule, decay accelerating factor for complement (Cromer blood group) | -0.0589777 |
| SERPINB1 | serpin peptidase inhibitor, clade B (ovalbumin), member 1 | -0.0569148 |
| EPCAM | epithelial cell adhesion molecule | -0.0562051 |
| RPLP0 | ribosomal protein, large, P0 | -0.0561686 |
| PIGR | polymeric immunoglobulin receptor | -0.0542401 |
| TXNIP | thioredoxin interacting protein | -0.0541922 |
| ERO1A | endoplasmic reticulum oxidoreductase 1 alpha | -0.0523586 |
| S100A6 | S100 calcium binding protein A6 | -0.0490991 |
| MLEC | malectin | -0.0459581 |
| VCL | vinculin | -0.045063 |
| PDIA3 | protein disulfide isomerase family A, member 3 | -0.0443787 |
| MYO1E | myosin IE | -0.0443435 |
| DSPP | dentin sialophosphoprotein | -0.0440225 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.0417855 |
| ARL6IP1 | ADP-ribosylation factor-like 6 interacting protein 1 | -0.0399862 |
| TMEM123 | transmembrane protein 123 | -0.0395078 |
| CANX | calnexin | -0.0390046 |
| KLF6 | Kruppel-like factor 6 | -0.038464 |
| ERRFI1 | ERBB receptor feedback inhibitor 1 | -0.0369115 |
| PPARG | peroxisome proliferator-activated receptor gamma | -0.0352599 |
| FERMT1 | fermitin family member 1 | -0.0340138 |
| MUC17 | mucin 17, cell surface associated | -0.0331951 |
| KRT19 | keratin 19, type I | -0.0324278 |
| PSD3 | pleckstrin and Sec7 domain containing 3 | -0.0320441 |
| ITGB1 | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | -0.0319253 |
| EREG | epiregulin | -0.0315511 |
| LOC112694756 | uncharaterized LOC112694756 | -0.0313149 |
| SLC5A3 | solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 | -0.0307394 |
| YBX1 | Y box binding protein 1 | -0.0302951 |
| MXI1 | MAX interactor 1, dimerization protein | -0.0296739 |
| ITPR2 | inositol 1,4,5-trisphosphate receptor, type 2 | -0.0289696 |
| FAM13A | family with sequence similarity 13, member A | -0.0284834 |
| ARHGAP5 | Rho GTPase activating protein 5 | -0.0283951 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | -0.0283223 |
| UBA6 | ubiquitin-like modifier activating enzyme 6 | -0.0273481 |
| PTGES3 | prostaglandin E synthase 3 (cytosolic) | -0.0264601 |
| CBX3 | chromobox homolog 3 | -0.0260441 |
| NDRG1 | N-myc downstream regulated 1 | -0.0255823 |
| LGALS4 | lectin, galactoside-binding, soluble, 4 | -0.0252158 |
| TOP2A | topoisomerase (DNA) II alpha 170kDa | -0.0250658 |
| CCND1 | cyclin D1 | -0.025061 |
| NRN1 | neuritin 1 | -0.0244889 |
| DLGAP1 | discs, large (Drosophila) homolog-associated protein 1 | -0.0244562 |
| CALM1 | calmodulin 1 (phosphorylase kinase, delta) | -0.0243855 |
| FOS | FBJ murine osteosarcoma viral oncogene homolog | -0.0243744 |
| RPL12 | ribosomal protein L12 | -0.0243738 |
| DSG2 | desmoglein 2 | -0.0242523 |
| S100A10 | S100 calcium binding protein A10 | -0.0240775 |
| HILPDA | hypoxia inducible lipid droplet-associated | -0.0240725 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0239549 |
| JUN | jun proto-oncogene | -0.0236468 |
| ARF1 | ADP-ribosylation factor 1 | -0.0233619 |
| YWHAZ | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta | -0.0232897 |
| PKP2 | plakophilin 2 | -0.0229559 |
| SLC12A2 | solute carrier family 12 (sodium/potassium/chloride transporter), member 2 | -0.0226052 |
| SLC35F3 | solute carrier family 35, member F3 | -0.02243 |
| GNAS | GNAS complex locus | -0.022352 |
| LOC102724023 | ES1 protein homolog, mitochondrial | -0.0223199 |
| ATP8B1 | ATPase, aminophospholipid transporter, class I, type 8B, member 1 | -0.0223195 |
| RPS6KA5 | ribosomal protein S6 kinase, 90kDa, polypeptide 5 | -0.0222745 |
| PERP | PERP, TP53 apoptosis effector | -0.0221939 |
| HDAC2 | histone deacetylase 2 | -0.0221935 |
| FNBP1L | formin binding protein 1-like | -0.0220725 |
| CDC42SE2 | CDC42 small effector 2 | -0.0219704 |
| BCAT1 | branched chain amino-acid transaminase 1, cytosolic | -0.0218306 |
| ERC2 | ELKS/RAB6-interacting/CAST family member 2 | -0.0217774 |
| EZR | ezrin | -0.021458 |
| PCDH9 | protocadherin 9 | -0.0213141 |
| FTL | ferritin, light polypeptide | -0.0212804 |
| CENPF | centromere protein F, 350/400kDa | -0.0209033 |
| KIF5B | kinesin family member 5B | -0.020868 |
| FAM162A | family with sequence similarity 162, member A | -0.020846 |
| PTBP3 | polypyrimidine tract binding protein 3 | -0.0204411 |
| LIMA1 | LIM domain and actin binding 1 | -0.0203166 |
| BZW1 | basic leucine zipper and W2 domains 1 | -0.0202634 |
| DDX5 | DEAD (Asp-Glu-Ala-Asp) box helicase 5 | -0.0200431 |
| TXN2 | thioredoxin 2 | -0.0199628 |
| TSC22D1 | TSC22 domain family, member 1 | -0.0198139 |
| MT1X | metallothionein 1X | -0.0194699 |
| DLG1 | discs, large homolog 1 (Drosophila) | -0.0192587 |
| SLC35A3 | solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 | -0.0191476 |
| HERPUD1 | homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 | -0.0189658 |
| PFN1 | profilin 1 | -0.0188739 |
| TPI1 | triosephosphate isomerase 1 | -0.0187836 |
