| Dataset | Tahoe Therapeutics Tahoe 100M Perturbation Atlas |
| Category | transcriptomics |
| Type | cell type |
| Description | Berbamine perturbation in SNU-1 cell line (Tahoe Therapeutics) |
| Similar Terms | |
| Downloads & Tools |
200 genes differentially expressed following the Berbamine_SNU-1 drug perturbation from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
| Symbol | Name | Standardized Value |
|---|---|---|
| SCD | stearoyl-CoA desaturase (delta-9-desaturase) | 0.232664 |
| CPED1 | cadherin-like and PC-esterase domain containing 1 | 0.0659004 |
| TPT1 | tumor protein, translationally-controlled 1 | 0.0597162 |
| RPL23 | ribosomal protein L23 | 0.0566848 |
| CRIM1 | cysteine rich transmembrane BMP regulator 1 (chordin-like) | 0.0548737 |
| ZFAND3 | zinc finger, AN1-type domain 3 | 0.0514187 |
| CAMTA1 | calmodulin binding transcription activator 1 | 0.0486845 |
| KMT2C | lysine (K)-specific methyltransferase 2C | 0.0478135 |
| HDAC9 | histone deacetylase 9 | 0.044657 |
| NCEH1 | neutral cholesterol ester hydrolase 1 | 0.0443375 |
| TEAD1 | TEA domain family member 1 (SV40 transcriptional enhancer factor) | 0.0427381 |
| SREBF2 | sterol regulatory element binding transcription factor 2 | 0.0422849 |
| DSCAM | Down syndrome cell adhesion molecule | 0.0420439 |
| UBR5 | ubiquitin protein ligase E3 component n-recognin 5 | 0.0414803 |
| SAMD4A | sterile alpha motif domain containing 4A | 0.0405028 |
| RPL35A | ribosomal protein L35a | 0.0393274 |
| SLC38A2 | solute carrier family 38, member 2 | 0.0377919 |
| PGK1 | phosphoglycerate kinase 1 | 0.0366936 |
| RBM39 | RNA binding motif protein 39 | 0.0365299 |
| AHI1 | Abelson helper integration site 1 | 0.0360243 |
| TMSB10 | thymosin beta 10 | 0.0357874 |
| HMGCS1 | 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) | 0.0355689 |
| ANKRD11 | ankyrin repeat domain 11 | 0.0346318 |
| NBEA | neurobeachin | 0.0338311 |
| ATOSA | atos homolog A | 0.0338104 |
| SMYD3 | SET and MYND domain containing 3 | 0.0335837 |
| HNRNPA2B1 | heterogeneous nuclear ribonucleoprotein A2/B1 | 0.0332443 |
| ANKRD17 | ankyrin repeat domain 17 | 0.0331081 |
| ASXL1 | additional sex combs like transcriptional regulator 1 | 0.0330156 |
| HNRNPH1 | heterogeneous nuclear ribonucleoprotein H1 (H) | 0.0327209 |
| ANKRD12 | ankyrin repeat domain 12 | 0.0326518 |
| EXT1 | exostosin glycosyltransferase 1 | 0.0324059 |
| PPP2R2A | protein phosphatase 2, regulatory subunit B, alpha | 0.0320094 |
| ACSL3 | acyl-CoA synthetase long-chain family member 3 | 0.0316799 |
| EVI5 | ecotropic viral integration site 5 | 0.0316603 |
| QKI | QKI, KH domain containing, RNA binding | 0.0315509 |
| TNPO1 | transportin 1 | 0.0310908 |
| SLC5A3 | solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 | 0.0307711 |
| GLI2 | GLI family zinc finger 2 | 0.030606 |
| KMT2E | lysine (K)-specific methyltransferase 2E | 0.0301201 |
| TTC28 | tetratricopeptide repeat domain 28 | 0.0297367 |
| WSB1 | WD repeat and SOCS box containing 1 | 0.0295528 |
| EFNA5 | ephrin-A5 | 0.029426 |
| PUM2 | pumilio RNA-binding family member 2 | 0.0293652 |
| KDM3A | lysine (K)-specific demethylase 3A | 0.0290272 |
| FDPS | farnesyl diphosphate synthase | 0.0286684 |
| ITGA10 | integrin, alpha 10 | 0.0282259 |
| PNISR | PNN-interacting serine/arginine-rich protein | 0.0281552 |
| INPP4B | inositol polyphosphate-4-phosphatase, type II, 105kDa | 0.0280928 |
| SETD5 | SET domain containing 5 | 0.0280638 |
| TBL1XR1 | transducin (beta)-like 1 X-linked receptor 1 | 0.0279311 |
| KIAA1958 | KIAA1958 | 0.0276512 |
| TMEM41B | transmembrane protein 41B | 0.0273755 |
| NAA15 | N(alpha)-acetyltransferase 15, NatA auxiliary subunit | 0.0272398 |
| B3GALT1 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 | 0.0269285 |
| NKTR | natural killer cell triggering receptor | 0.0261008 |
| ECT2 | epithelial cell transforming 2 | 0.0258483 |
| PTK2 | protein tyrosine kinase 2 | 0.025624 |
| RAPGEF6 | Rap guanine nucleotide exchange factor (GEF) 6 | 0.0256132 |
| SRSF11 | serine/arginine-rich splicing factor 11 | 0.0253193 |
| EIF4A2 | eukaryotic translation initiation factor 4A2 | 0.0252333 |
| NFE2L2 | nuclear factor, erythroid 2-like 2 | 0.0249894 |
| PLXNA1 | plexin A1 | 0.0246141 |
| GLS2 | glutaminase 2 (liver, mitochondrial) | 0.0244488 |
| EXOC4 | exocyst complex component 4 | 0.0242391 |
| SFPQ | splicing factor proline/glutamine-rich | 0.0241058 |
| CTIF | CBP80/20-dependent translation initiation factor | 0.0240932 |
| ACACA | acetyl-CoA carboxylase alpha | 0.0240801 |
| TCERG1 | transcription elongation regulator 1 | 0.0237203 |
| ENOX1 | ecto-NOX disulfide-thiol exchanger 1 | 0.0233649 |
| ERBIN | erbb2 interacting protein | 0.0233548 |
| ARID1B | AT rich interactive domain 1B (SWI1-like) | 0.0232983 |
| NAV2 | neuron navigator 2 | 0.0232361 |
| KAT6A | K(lysine) acetyltransferase 6A | 0.0232279 |
| FHAD1 | forkhead-associated (FHA) phosphopeptide binding domain 1 | 0.0230413 |
| TNRC6B | trinucleotide repeat containing 6B | 0.0229338 |
| SLC7A1 | solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 | 0.0226948 |
| ANKHD1 | ankyrin repeat and KH domain containing 1 | 0.0226927 |
| HSD17B12 | hydroxysteroid (17-beta) dehydrogenase 12 | 0.0226578 |
| XKR6 | XK, Kell blood group complex subunit-related family, member 6 | 0.0226022 |
| ZNF638 | zinc finger protein 638 | 0.022597 |
| SPPL3 | signal peptide peptidase like 3 | 0.0223275 |
| LPP | LIM domain containing preferred translocation partner in lipoma | 0.0222889 |
| CREBBP | CREB binding protein | 0.0222814 |
| PTPRG | protein tyrosine phosphatase, receptor type, G | 0.0221791 |
| FBXO11 | F-box protein 11 | 0.0221722 |
| PMM2 | phosphomannomutase 2 | 0.0221596 |
| PYGB | phosphorylase, glycogen; brain | 0.0221389 |
| MAP4K4 | mitogen-activated protein kinase kinase kinase kinase 4 | 0.0220707 |
| AGAP1 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 | 0.0220147 |
| NUFIP2 | nuclear fragile X mental retardation protein interacting protein 2 | 0.0219835 |
| CCNY | cyclin Y | 0.0219276 |
| GBE1 | glucan (1,4-alpha-), branching enzyme 1 | 0.0218195 |
| SEC63 | SEC63 homolog (S. cerevisiae) | 0.0216967 |
| DUSP6 | dual specificity phosphatase 6 | 0.0214905 |
| MYL12B | myosin, light chain 12B, regulatory | 0.0214879 |
| GNB1 | guanine nucleotide binding protein (G protein), beta polypeptide 1 | 0.0214854 |
| RNF145 | ring finger protein 145 | 0.0214213 |
| SMURF2 | SMAD specific E3 ubiquitin protein ligase 2 | 0.0213417 |
| HIVEP2 | human immunodeficiency virus type I enhancer binding protein 2 | 0.0211651 |
| Symbol | Name | Standardized Value |
|---|---|---|
| GAPDH | glyceraldehyde-3-phosphate dehydrogenase | -0.222663 |
| PKM | pyruvate kinase, muscle | -0.136976 |
| HSPD1 | heat shock 60kDa protein 1 (chaperonin) | -0.0791393 |
| S100A6 | S100 calcium binding protein A6 | -0.0715496 |
| LDHA | lactate dehydrogenase A | -0.0650558 |
| CCND1 | cyclin D1 | -0.0594996 |
| CITED2 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | -0.0592053 |
| PTMA | prothymosin, alpha | -0.0572408 |
| TPM4 | tropomyosin 4 | -0.0567048 |
| RPLP0 | ribosomal protein, large, P0 | -0.0551104 |
| HSP90AB1 | heat shock protein 90kDa alpha (cytosolic), class B member 1 | -0.0546107 |
| MINDY2 | MINDY lysine 48 deubiquitinase 2 | -0.0533527 |
| POTEF | POTE ankyrin domain family, member F | -0.0526358 |
| ACTG1 | actin gamma 1 | -0.0525795 |
| PFN1 | profilin 1 | -0.0506777 |
| RPS8 | ribosomal protein S8 | -0.0502334 |
| ITGB1 | integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) | -0.0500503 |
| ENO1 | enolase 1, (alpha) | -0.0487175 |
| PDE4B | phosphodiesterase 4B, cAMP-specific | -0.0459596 |
| HSP90B1 | heat shock protein 90kDa beta (Grp94), member 1 | -0.0459039 |
| S100A4 | S100 calcium binding protein A4 | -0.0445721 |
| EEF2 | eukaryotic translation elongation factor 2 | -0.0441086 |
| PHLDA1 | pleckstrin homology-like domain, family A, member 1 | -0.0430368 |
| NFAT5 | nuclear factor of activated T-cells 5, tonicity-responsive | -0.0426208 |
| GLI3 | GLI family zinc finger 3 | -0.0413262 |
| BNIP3 | BCL2/adenovirus E1B 19kDa interacting protein 3 | -0.0386787 |
| BMP10 | bone morphogenetic protein 10 | -0.0381042 |
| RPL28 | ribosomal protein L28 | -0.0367274 |
| HSP90AA1 | heat shock protein 90kDa alpha (cytosolic), class A member 1 | -0.0363665 |
| TMSB4X | thymosin beta 4, X-linked | -0.0352866 |
| EIF2AK2 | eukaryotic translation initiation factor 2-alpha kinase 2 | -0.0346977 |
| LOC102724023 | ES1 protein homolog, mitochondrial | -0.0341779 |
| RPS6 | ribosomal protein S6 | -0.0336976 |
| DSTN | destrin (actin depolymerizing factor) | -0.0322855 |
| PRKDC | protein kinase, DNA-activated, catalytic polypeptide | -0.0322625 |
| RHOA | ras homolog family member A | -0.0322139 |
| RPLP1 | ribosomal protein, large, P1 | -0.0319063 |
| GCNT1 | glucosaminyl (N-acetyl) transferase 1, core 2 | -0.0313663 |
| HSPB1 | heat shock 27kDa protein 1 | -0.0311075 |
| RPS27 | ribosomal protein S27 | -0.0309155 |
| CERT1 | ceramide transporter 1 | -0.0307722 |
| TRERF1 | transcriptional regulating factor 1 | -0.0303716 |
| MKI67 | marker of proliferation Ki-67 | -0.0299116 |
| EEF1A1 | eukaryotic translation elongation factor 1 alpha 1 | -0.0296199 |
| PDE4D | phosphodiesterase 4D, cAMP-specific | -0.0290511 |
| RPS2 | ribosomal protein S2 | -0.0290298 |
| RPS13 | ribosomal protein S13 | -0.0290172 |
| TUBB4B | tubulin, beta 4B class IVb | -0.0277895 |
| ARL4C | ADP-ribosylation factor-like 4C | -0.0268145 |
| SEPTIN7 | septin 7 | -0.0265787 |
| DPYD | dihydropyrimidine dehydrogenase | -0.0265584 |
| ITGA6 | integrin, alpha 6 | -0.0265287 |
| DIAPH3 | diaphanous-related formin 3 | -0.0264642 |
| SERBP1 | SERPINE1 mRNA binding protein 1 | -0.0264158 |
| S100A9 | S100 calcium binding protein A9 | -0.0262021 |
| FOXP1 | forkhead box P1 | -0.0260903 |
| GCLM | glutamate-cysteine ligase, modifier subunit | -0.0254477 |
| PABPC1 | poly(A) binding protein, cytoplasmic 1 | -0.02542 |
| HNRNPA1 | heterogeneous nuclear ribonucleoprotein A1 | -0.0253454 |
| ATAD2 | ATPase family, AAA domain containing 2 | -0.0253002 |
| S100A10 | S100 calcium binding protein A10 | -0.0251924 |
| ACTR2 | ARP2 actin-related protein 2 homolog (yeast) | -0.0250319 |
| B2M | beta-2-microglobulin | -0.0248737 |
| VDAC1 | voltage-dependent anion channel 1 | -0.0245914 |
| RPL3 | ribosomal protein L3 | -0.0245077 |
| TUBA1B | tubulin, alpha 1b | -0.0243835 |
| BLTP3B | bridge-like lipid transfer protein family member 3B | -0.0243425 |
| RPL37A | ribosomal protein L37a | -0.0235665 |
| HEG1 | heart development protein with EGF-like domains 1 | -0.0234259 |
| SERPINB1 | serpin peptidase inhibitor, clade B (ovalbumin), member 1 | -0.0226644 |
| CYB5B | cytochrome b5 type B (outer mitochondrial membrane) | -0.0224313 |
| RPL7 | ribosomal protein L7 | -0.0223977 |
| P4HB | prolyl 4-hydroxylase, beta polypeptide | -0.0220665 |
| AHNAK | AHNAK nucleoprotein | -0.0216606 |
| PDIA3 | protein disulfide isomerase family A, member 3 | -0.0215574 |
| HDGF | hepatoma-derived growth factor | -0.021482 |
| TOP2A | topoisomerase (DNA) II alpha 170kDa | -0.021364 |
| FAT1 | FAT atypical cadherin 1 | -0.0211985 |
| YBX1 | Y box binding protein 1 | -0.0209251 |
| RPL27A | ribosomal protein L27a | -0.0209191 |
| RPL13A | ribosomal protein L13a | -0.0208945 |
| EMP3 | epithelial membrane protein 3 | -0.020838 |
| PNPT1 | polyribonucleotide nucleotidyltransferase 1 | -0.0208108 |
| MBNL1 | muscleblind-like splicing regulator 1 | -0.0204402 |
| ARHGAP25 | Rho GTPase activating protein 25 | -0.0204066 |
| RPL39 | ribosomal protein L39 | -0.0202558 |
| ADAM10 | ADAM metallopeptidase domain 10 | -0.0200451 |
| ALDH3A2 | aldehyde dehydrogenase 3 family, member A2 | -0.019959 |
| SOX9 | SRY (sex determining region Y)-box 9 | -0.0195797 |
| SCARB2 | scavenger receptor class B, member 2 | -0.019535 |
| YWHAH | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta | -0.01946 |
| ATXN1 | ataxin 1 | -0.0194253 |
| TUBB | tubulin, beta class I | -0.0193883 |
| CALM1 | calmodulin 1 (phosphorylase kinase, delta) | -0.0192351 |
| RPL7A | ribosomal protein L7a | -0.019228 |
| TPR | translocated promoter region, nuclear basket protein | -0.0191843 |
| HMGB1 | high mobility group box 1 | -0.0190224 |
| SBF2 | SET binding factor 2 | -0.0189342 |
| TPM3 | tropomyosin 3 | -0.0189328 |
| MYO5A | myosin VA (heavy chain 12, myoxin) | -0.0188705 |
